RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 RTL9Q8NET4 1388 aa26.62■■□□□ 1.85
VPS36-203ENST00000475375 IRS4O14654 1257 aaPredicted RBP26.62■■□□□ 1.85
VPS36-203ENST00000475375 KIF4BQ2VIQ3 1234 aa26.62■■□□□ 1.85
VPS36-203ENST00000475375 TBC1D16Q8TBP0 767 aa26.62■■□□□ 1.85
VPS36-203ENST00000475375 CCDC102AQ96A19 550 aa26.62■■□□□ 1.85
VPS36-203ENST00000475375 FAM155AB1AL88 458 aaPredicted RBP26.61■■□□□ 1.85
VPS36-203ENST00000475375 RPS8P62241 208 aaKnown RBP26.61■■□□□ 1.85
VPS36-203ENST00000475375 SULF1Q8IWU6 871 aa26.61■■□□□ 1.85
VPS36-203ENST00000475375 ZC3H12CQ9C0D7 883 aaKnown RBP26.61■■□□□ 1.85
VPS36-203ENST00000475375 HYPKQ9NX55 129 aa26.61■■□□□ 1.85
VPS36-203ENST00000475375 HOXB7P09629 217 aa26.6■■□□□ 1.85
VPS36-203ENST00000475375 KIF23Q02241 960 aaPredicted RBP26.6■■□□□ 1.85
VPS36-203ENST00000475375 GGA3Q9NZ52 723 aa26.6■■□□□ 1.85
VPS36-203ENST00000475375 ANKIB1Q9P2G1 1089 aa26.59■■□□□ 1.85
VPS36-203ENST00000475375 TRIM35Q9UPQ4 493 aa26.59■■□□□ 1.85
VPS36-203ENST00000475375 COL4A1P02462 1669 aa26.58■■□□□ 1.85
VPS36-203ENST00000475375 UFL1O94874 794 aa26.58■■□□□ 1.85
VPS36-203ENST00000475375 WDR43Q15061 677 aaKnown RBP eCLIP26.58■■□□□ 1.85
VPS36-203ENST00000475375 RUNDC1Q96C34 613 aa26.58■■□□□ 1.85
VPS36-203ENST00000475375 TRPA1O75762 1119 aa26.57■■□□□ 1.84
VPS36-203ENST00000475375 DUSP27Q5VZP5 1158 aa26.57■■□□□ 1.84
VPS36-203ENST00000475375 RIC3Q7Z5B4 369 aa26.57■■□□□ 1.84
VPS36-203ENST00000475375 SAGE1Q9NXZ1 904 aa26.57■■□□□ 1.84
VPS36-203ENST00000475375 VIL1P09327 827 aaKnown RBP26.56■■□□□ 1.84
VPS36-203ENST00000475375 GOLGA2Q08379 1002 aa26.56■■□□□ 1.84
VPS36-203ENST00000475375 TRIM28Q13263 835 aaKnown RBP26.56■■□□□ 1.84
VPS36-203ENST00000475375 SEC31BQ9NQW1 1179 aa26.56■■□□□ 1.84
VPS36-203ENST00000475375 GGA1Q9UJY5 639 aa26.56■■□□□ 1.84
VPS36-203ENST00000475375 POLR2AP24928 1970 aaKnown RBP26.56■■□□□ 1.84
VPS36-203ENST00000475375 HSP90B1P14625 803 aaKnown RBP26.55■■□□□ 1.84
VPS36-203ENST00000475375 RNF186Q9NXI6 227 aa26.55■■□□□ 1.84
VPS36-203ENST00000475375 ASTN2O75129 1339 aaPredicted RBP26.55■■□□□ 1.84
VPS36-203ENST00000475375 ZBTB38Q8NAP3 1195 aaPredicted RBP26.54■■□□□ 1.84
VPS36-203ENST00000475375 CDCA5Q96FF9 252 aa26.54■■□□□ 1.84
VPS36-203ENST00000475375 PODXL2Q9NZ53 605 aa26.54■■□□□ 1.84
VPS36-203ENST00000475375 MYBBP1AQ9BQG0 1328 aaKnown RBP26.54■■□□□ 1.84
VPS36-203ENST00000475375 SLC10A3P09131 477 aa26.53■■□□□ 1.84
VPS36-203ENST00000475375 ANGEL2Q5VTE6 544 aaKnown RBP26.52■■□□□ 1.84
VPS36-203ENST00000475375 MYD88Q99836 296 aa26.52■■□□□ 1.84
VPS36-203ENST00000475375 SCARF1Q14162 830 aa26.51■■□□□ 1.83
VPS36-203ENST00000475375 CCDC152Q4G0S7 254 aa26.51■■□□□ 1.83
VPS36-203ENST00000475375 RSBN1LQ6PCB5 846 aaPredicted RBP26.51■■□□□ 1.83
VPS36-203ENST00000475375 CCDC85AQ96PX6 553 aaPredicted RBP26.51■■□□□ 1.83
VPS36-203ENST00000475375 MBIPQ9NS73 344 aa26.51■■□□□ 1.83
VPS36-203ENST00000475375 SOX10P56693 466 aa26.5■■□□□ 1.83
VPS36-203ENST00000475375 AGBL3Q8NEM8 1001 aa26.5■■□□□ 1.83
VPS36-203ENST00000475375 CSRNP1Q96S65 589 aa26.5■■□□□ 1.83
VPS36-203ENST00000475375 SCN9AQ15858 1988 aa26.49■■□□□ 1.83
VPS36-203ENST00000475375 PHAXQ9H814 394 aaKnown RBP26.49■■□□□ 1.83
VPS36-203ENST00000475375 TNRC18O15417 2968 aaPredicted RBP26.49■■□□□ 1.83
VPS36-203ENST00000475375 ZNF280AP59817 542 aaPredicted RBP26.48■■□□□ 1.83
VPS36-203ENST00000475375 JARID2Q92833 1246 aaPredicted RBP26.48■■□□□ 1.83
VPS36-203ENST00000475375 ADAMTS8Q9UP79 889 aa26.48■■□□□ 1.83
VPS36-203ENST00000475375 ELL2O00472 640 aaPredicted RBP26.47■■□□□ 1.83
VPS36-203ENST00000475375 PDE8AO60658 829 aa26.47■■□□□ 1.83
VPS36-203ENST00000475375 ANKRD18AQ8IVF6 992 aa26.47■■□□□ 1.83
VPS36-203ENST00000475375 XDHP47989 1333 aa26.46■■□□□ 1.83
VPS36-203ENST00000475375 AKAP11Q9UKA4 1901 aa26.46■■□□□ 1.83
VPS36-203ENST00000475375 PCCAP05165 728 aaPredicted RBP26.46■■□□□ 1.83
VPS36-203ENST00000475375 USP17L8P0C7I0 530 aa26.46■■□□□ 1.83
VPS36-203ENST00000475375 RASAL3Q86YV0 1011 aa26.46■■□□□ 1.83
VPS36-203ENST00000475375 CCDC191Q8NCU4 936 aa26.46■■□□□ 1.83
VPS36-203ENST00000475375 MYOZ2Q9NPC6 264 aa26.46■■□□□ 1.83
VPS36-203ENST00000475375 CWC25Q9NXE8 425 aaPredicted RBP26.46■■□□□ 1.83
VPS36-203ENST00000475375 REM2Q8IYK8 340 aaPredicted RBP26.45■■□□□ 1.82
VPS36-203ENST00000475375 USP17L3A6NCW0 530 aa26.44■■□□□ 1.82
VPS36-203ENST00000475375 USP17L4A6NCW7 530 aa26.44■■□□□ 1.82
VPS36-203ENST00000475375 FKBP1BP68106 108 aa26.44■■□□□ 1.82
VPS36-203ENST00000475375 DDX10Q13206 875 aaKnown RBP26.44■■□□□ 1.82
VPS36-203ENST00000475375 USP17L1Q7RTZ2 530 aa26.44■■□□□ 1.82
VPS36-203ENST00000475375 CTU1Q7Z7A3 348 aaKnown RBP26.44■■□□□ 1.82
VPS36-203ENST00000475375 ZNF609O15014 1411 aa26.43■■□□□ 1.82
VPS36-203ENST00000475375 ATP2B4P23634 1241 aa26.43■■□□□ 1.82
VPS36-203ENST00000475375 SCAF8Q9UPN6 1271 aaKnown RBP26.43■■□□□ 1.82
VPS36-203ENST00000475375 PDE4DIPQ5VU43 2346 aa26.42■■□□□ 1.82
VPS36-203ENST00000475375 DDX58O95786 925 aaKnown RBP26.42■■□□□ 1.82
VPS36-203ENST00000475375 PITPNM2Q9BZ72 1349 aa26.41■■□□□ 1.82
VPS36-203ENST00000475375 TTLL12Q14166 644 aaPredicted RBP26.41■■□□□ 1.82
VPS36-203ENST00000475375 MOB2Q70IA6 237 aa26.41■■□□□ 1.82
VPS36-203ENST00000475375 PODNQ7Z5L7 613 aa26.41■■□□□ 1.82
VPS36-203ENST00000475375 FBXW7Q969H0 707 aa26.41■■□□□ 1.82
VPS36-203ENST00000475375 GMLQ99445 158 aa26.41■■□□□ 1.82
VPS36-203ENST00000475375 GNAI1P63096 354 aa26.4■■□□□ 1.82
VPS36-203ENST00000475375 CDC5LQ99459 802 aaKnown RBP26.4■■□□□ 1.82
VPS36-203ENST00000475375 METTL22Q9BUU2 404 aaPredicted RBP26.4■■□□□ 1.82
VPS36-203ENST00000475375 IFT57Q9NWB7 429 aa26.4■■□□□ 1.82
VPS36-203ENST00000475375 PAPPA2Q9BXP8 1791 aa26.4■■□□□ 1.82
VPS36-203ENST00000475375 UBE2Q2LH0YL09 131 aa26.39■■□□□ 1.82
VPS36-203ENST00000475375 ZNF853P0CG23 659 aa26.39■■□□□ 1.82
VPS36-203ENST00000475375 CALD1Q05682 793 aaKnown RBP26.39■■□□□ 1.82
VPS36-203ENST00000475375 PRAMEF18Q5VWM3 479 aa26.39■■□□□ 1.82
VPS36-203ENST00000475375 HDAC9Q9UKV0 1011 aa26.39■■□□□ 1.82
VPS36-203ENST00000475375 CTSWP56202 376 aa26.37■■□□□ 1.81
VPS36-203ENST00000475375 NBPF9Q3BBW0 867 aa26.37■■□□□ 1.81
VPS36-203ENST00000475375 OGFOD1Q8N543 542 aa26.37■■□□□ 1.81
VPS36-203ENST00000475375 MAP3K2Q9Y2U5 619 aa26.37■■□□□ 1.81
VPS36-203ENST00000475375 WTIPA6NIX2 430 aaPredicted RBP26.36■■□□□ 1.81
VPS36-203ENST00000475375 APAF1O14727 1248 aa26.36■■□□□ 1.81
VPS36-203ENST00000475375 TBC1D8O95759 1140 aa26.36■■□□□ 1.81
VPS36-203ENST00000475375 CCDC30Q5VVM6 783 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms