RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 DUOX1Q9NRD9 1551 aa12.27□□□□□ -0.44
VCL-204ENST00000472585 GRAPQ13588 217 aa12.27□□□□□ -0.45
VCL-204ENST00000472585 GRAPLQ8TC17 118 aaPredicted RBP12.27□□□□□ -0.45
VCL-204ENST00000472585 CELF1Q92879 486 aaKnown RBP12.27□□□□□ -0.45
VCL-204ENST00000472585 POLLQ9UGP5 575 aa12.27□□□□□ -0.45
VCL-204ENST00000472585 TRMT112Q9UI30 125 aaKnown RBP12.27□□□□□ -0.45
VCL-204ENST00000472585 PSMD14O00487 310 aa12.26□□□□□ -0.45
VCL-204ENST00000472585 PRR29P0C7W0 189 aa12.26□□□□□ -0.45
VCL-204ENST00000472585 DDX46Q7L014 1031 aaKnown RBP12.26□□□□□ -0.45
VCL-204ENST00000472585 CSRNP1Q96S65 589 aa12.26□□□□□ -0.45
VCL-204ENST00000472585 TAF1P21675 1872 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 CHL1O00533 1208 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 RIMBP2O15034 1052 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 SLC10A3P09131 477 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 TMPOP42166 694 aaKnown RBP12.25□□□□□ -0.45
VCL-204ENST00000472585 GPSM2P81274 684 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 TBC1D10BQ4KMP7 808 aaPredicted RBP12.25□□□□□ -0.45
VCL-204ENST00000472585 DPF2Q92785 391 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 DBNDD1Q9H9R9 158 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 ASTN2O75129 1339 aaPredicted RBP12.25□□□□□ -0.45
VCL-204ENST00000472585 RTL9Q8NET4 1388 aa12.25□□□□□ -0.45
VCL-204ENST00000472585 ADM5C9JUS6 153 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 ATP5J2-PTCD1G3V325 749 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 NEFMP07197 916 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 DOK7Q18PE1 504 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 RBM26Q5T8P6 1007 aaKnown RBP12.24□□□□□ -0.45
VCL-204ENST00000472585 SULF1Q8IWU6 871 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 SH3TC1Q8TE82 1336 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 FAM89AQ96GI7 184 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 ISCA1Q9BUE6 129 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 BABAM1Q9NWV8 329 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 CHPF2Q9P2E5 772 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 TRIM35Q9UPQ4 493 aa12.24□□□□□ -0.45
VCL-204ENST00000472585 MAPK8IP3Q9UPT6 1336 aa12.23□□□□□ -0.45
VCL-204ENST00000472585 SF3B3Q15393 1217 aaKnown RBP12.23□□□□□ -0.45
VCL-204ENST00000472585 WASHC4Q2M389 1173 aa12.23□□□□□ -0.45
VCL-204ENST00000472585 POTEHQ6S545 545 aa12.23□□□□□ -0.45
VCL-204ENST00000472585 NSFL1CQ9UNZ2 370 aaKnown RBP12.23□□□□□ -0.45
VCL-204ENST00000472585 LAMB2P55268 1798 aa12.23□□□□□ -0.45
VCL-204ENST00000472585 WTIPA6NIX2 430 aaPredicted RBP12.22□□□□□ -0.45
VCL-204ENST00000472585 RPS12P25398 132 aaKnown RBP12.22□□□□□ -0.45
VCL-204ENST00000472585 HSP90AB3PQ58FF7 597 aa12.22□□□□□ -0.45
VCL-204ENST00000472585 RTL5Q5HYW3 569 aaPredicted RBP12.22□□□□□ -0.45
VCL-204ENST00000472585 HABP4Q5JVS0 413 aaKnown RBP12.22□□□□□ -0.45
VCL-204ENST00000472585 ANKRD36CQ5JPF3 1778 aa12.22□□□□□ -0.45
VCL-204ENST00000472585 ECE2O60344 883 aa12.21□□□□□ -0.45
VCL-204ENST00000472585 NEUROD2Q15784 382 aa12.21□□□□□ -0.45
VCL-204ENST00000472585 ANKRD13DQ6ZTN6 518 aa12.21□□□□□ -0.45
VCL-204ENST00000472585 CCDC146Q8IYE0 955 aa12.21□□□□□ -0.45
VCL-204ENST00000472585 PLBD2Q8NHP8 589 aa12.21□□□□□ -0.45
VCL-204ENST00000472585 TBC1D16Q8TBP0 767 aa12.21□□□□□ -0.45
VCL-204ENST00000472585 ZNF296Q8WUU4 475 aaPredicted RBP12.21□□□□□ -0.45
VCL-204ENST00000472585 SEC31BQ9NQW1 1179 aa12.21□□□□□ -0.45
VCL-204ENST00000472585 C6orf229H3BNL8 230 aa12.2□□□□□ -0.46
VCL-204ENST00000472585 TBC1D8O95759 1140 aa12.2□□□□□ -0.46
VCL-204ENST00000472585 VIL1P09327 827 aaKnown RBP12.2□□□□□ -0.46
VCL-204ENST00000472585 KIF4BQ2VIQ3 1234 aa12.2□□□□□ -0.46
VCL-204ENST00000472585 FBXO46Q6PJ61 603 aaPredicted RBP12.2□□□□□ -0.46
VCL-204ENST00000472585 TMC4Q7Z404 712 aa12.2□□□□□ -0.46
VCL-204ENST00000472585 RASAL3Q86YV0 1011 aa12.2□□□□□ -0.46
VCL-204ENST00000472585 PNNQ9H307 717 aaKnown RBP12.2□□□□□ -0.46
VCL-204ENST00000472585 GGA3Q9NZ52 723 aa12.2□□□□□ -0.46
VCL-204ENST00000472585 FXR2P51116 673 aaKnown RBP eCLIP12.19□□□□□ -0.463e-12■■■□□ 17.9
VCL-204ENST00000472585 RPS8P62241 208 aaKnown RBP12.19□□□□□ -0.46
VCL-204ENST00000472585 TRIM28Q13263 835 aaKnown RBP12.19□□□□□ -0.46
VCL-204ENST00000472585 PIP4P2Q8N4L2 257 aa12.19□□□□□ -0.46
VCL-204ENST00000472585 JARID2Q92833 1246 aaPredicted RBP12.19□□□□□ -0.46
VCL-204ENST00000472585 CDCA5Q96FF9 252 aa12.19□□□□□ -0.46
VCL-204ENST00000472585 SCAF8Q9UPN6 1271 aaKnown RBP12.19□□□□□ -0.46
VCL-204ENST00000472585 LRRC37AA6NMS7 1700 aa12.18□□□□□ -0.46
VCL-204ENST00000472585 DDX60Q8IY21 1712 aaKnown RBP12.18□□□□□ -0.46
VCL-204ENST00000472585 G3V3G9 751 aa12.18□□□□□ -0.46
VCL-204ENST00000472585 IRS4O14654 1257 aaPredicted RBP12.18□□□□□ -0.46
VCL-204ENST00000472585 FKBP1BP68106 108 aa12.18□□□□□ -0.46
VCL-204ENST00000472585 DCAF8Q5TAQ9 597 aa12.18□□□□□ -0.46
VCL-204ENST00000472585 HDGFL1Q5TGJ6 251 aa12.18□□□□□ -0.46
VCL-204ENST00000472585 PODXL2Q9NZ53 605 aa12.18□□□□□ -0.46
VCL-204ENST00000472585 LAS1LQ9Y4W2 734 aaKnown RBP12.18□□□□□ -0.46
VCL-204ENST00000472585 GPR25O00155 361 aa12.17□□□□□ -0.46
VCL-204ENST00000472585 SCARF1Q14162 830 aa12.17□□□□□ -0.46
VCL-204ENST00000472585 DUSP27Q5VZP5 1158 aa12.17□□□□□ -0.46
VCL-204ENST00000472585 MOB2Q70IA6 237 aa12.17□□□□□ -0.46
VCL-204ENST00000472585 GMLQ99445 158 aa12.17□□□□□ -0.46
VCL-204ENST00000472585 EYA3Q99504 573 aa12.17□□□□□ -0.46
VCL-204ENST00000472585 PHAXQ9H814 394 aaKnown RBP12.17□□□□□ -0.46
VCL-204ENST00000472585 PAPPA2Q9BXP8 1791 aa12.16□□□□□ -0.46
VCL-204ENST00000472585 ZNF280AP59817 542 aaPredicted RBP12.16□□□□□ -0.46
VCL-204ENST00000472585 DBF4Q9UBU7 674 aaPredicted RBP12.16□□□□□ -0.46
VCL-204ENST00000472585 SCN9AQ15858 1988 aa12.16□□□□□ -0.46
VCL-204ENST00000472585 FKTNO75072 461 aa12.15□□□□□ -0.46
VCL-204ENST00000472585 TTLL12Q14166 644 aaPredicted RBP12.15□□□□□ -0.46
VCL-204ENST00000472585 NOM1Q5C9Z4 860 aaKnown RBP12.15□□□□□ -0.46
VCL-204ENST00000472585 ANGEL2Q5VTE6 544 aaKnown RBP12.15□□□□□ -0.46
VCL-204ENST00000472585 PRAMEF18Q5VWM3 479 aa12.15□□□□□ -0.46
VCL-204ENST00000472585 CCDC85AQ96PX6 553 aaPredicted RBP12.15□□□□□ -0.46
VCL-204ENST00000472585 ZC3H12CQ9C0D7 883 aaKnown RBP12.15□□□□□ -0.46
VCL-204ENST00000472585 ADAMTS8Q9UP79 889 aa12.15□□□□□ -0.46
VCL-204ENST00000472585 KIAA0100Q14667 2235 aaKnown RBP12.14□□□□□ -0.47
VCL-204ENST00000472585 UFL1O94874 794 aa12.14□□□□□ -0.47
VCL-204ENST00000472585 HOXB7P09629 217 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms