RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 DLEC1Q9Y238 1755 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 KLRK1P26718 216 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 GTF2E1P29083 439 aaPredicted RBP12.29□□□□□ -0.44
SF3A1-207ENST00000471342 CHRNDQ07001 517 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 LDHAL6AQ6ZMR3 332 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 TXNRD3Q86VQ6 643 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 CHD1LQ86WJ1 897 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 HELBQ8NG08 1087 aaPredicted RBP12.29□□□□□ -0.44
SF3A1-207ENST00000471342 CCDC136Q96JN2 1154 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 SLX4Q8IY92 1834 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 RAB11FIP3O75154 756 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 HMMRO75330 724 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 BBOX1O75936 387 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 PDE8BO95263 885 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 IL15P40933 162 aaPredicted RBP12.28□□□□□ -0.44
SF3A1-207ENST00000471342 GPSM2P81274 684 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 PLEKHM2Q8IWE5 1019 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 FHDC1Q9C0D6 1143 aaPredicted RBP12.28□□□□□ -0.44
SF3A1-207ENST00000471342 IL1RAPL2Q9NP60 686 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 GPR108Q9NPR9 543 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 PODXL2Q9NZ53 605 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 POLLQ9UGP5 575 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 ATP6V0A2Q9Y487 856 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 A0A1B0GUL6 1792 aa12.28□□□□□ -0.44
SF3A1-207ENST00000471342 BRCA1P38398 1863 aaKnown RBP12.27□□□□□ -0.44
SF3A1-207ENST00000471342 COL4A5P29400 1685 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 ZBTB22O15209 634 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 TAF5LO75529 589 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 HSP90B1P14625 803 aaKnown RBP12.27□□□□□ -0.45
SF3A1-207ENST00000471342 ADORA1P30542 326 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 TIMM10P62072 90 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 TNNI3KQ59H18 835 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 PRPF40BQ6NWY9 871 aaKnown RBP12.27□□□□□ -0.45
SF3A1-207ENST00000471342 DDX46Q7L014 1031 aaKnown RBP12.27□□□□□ -0.45
SF3A1-207ENST00000471342 ANKRD18AQ8IVF6 992 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 SP8Q8IXZ3 490 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 RBM17Q96I25 401 aaKnown RBP12.27□□□□□ -0.45
SF3A1-207ENST00000471342 CDC5LQ99459 802 aaKnown RBP12.27□□□□□ -0.45
SF3A1-207ENST00000471342 SYT17Q9BSW7 474 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 STAP2Q9UGK3 403 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 DBNLQ9UJU6 430 aaKnown RBP12.27□□□□□ -0.45
SF3A1-207ENST00000471342 CHMP3Q9Y3E7 222 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 FPGT-TNNI3KV9GXZ4 949 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 ZNF609O15014 1411 aa12.27□□□□□ -0.45
SF3A1-207ENST00000471342 H0YIN7 160 aa12.26□□□□□ -0.45
SF3A1-207ENST00000471342 POLD1P28340 1107 aa12.26□□□□□ -0.45
SF3A1-207ENST00000471342 ANKRD45Q5TZF3 282 aa12.26□□□□□ -0.45
SF3A1-207ENST00000471342 C15orf52Q6ZUT6 534 aaKnown RBP12.26□□□□□ -0.45
SF3A1-207ENST00000471342 PI4K2BQ8TCG2 481 aa12.26□□□□□ -0.45
SF3A1-207ENST00000471342 KIF1BPQ96EK5 621 aa12.26□□□□□ -0.45
SF3A1-207ENST00000471342 RTFDC1Q9BY42 306 aaPredicted RBP12.26□□□□□ -0.45
SF3A1-207ENST00000471342 LNPKQ9C0E8 428 aa12.26□□□□□ -0.45
SF3A1-207ENST00000471342 OSBPL3Q9H4L5 887 aa12.26□□□□□ -0.45
SF3A1-207ENST00000471342 GPR101Q96P66 508 aaPredicted RBP12.25□□□□□ -0.45
SF3A1-207ENST00000471342 DBNDD2Q9BQY9 259 aa12.25□□□□□ -0.45
SF3A1-207ENST00000471342 LRRCC1Q9C099 1032 aa12.25□□□□□ -0.45
SF3A1-207ENST00000471342 ZNF804BA4D1E1 1349 aa12.25□□□□□ -0.45
SF3A1-207ENST00000471342 MROH5Q6ZUA9 1318 aa12.25□□□□□ -0.45
SF3A1-207ENST00000471342 NFKBIEO00221 500 aa12.24□□□□□ -0.45
SF3A1-207ENST00000471342 PPEF1O14829 653 aaPredicted RBP12.24□□□□□ -0.45
SF3A1-207ENST00000471342 COL1A1P02452 1464 aaPredicted RBP12.24□□□□□ -0.45
SF3A1-207ENST00000471342 G3BP1Q13283 466 aaKnown RBP eCLIP12.24□□□□□ -0.458e-8■■□□□ 11.6
SF3A1-207ENST00000471342 SCARF1Q14162 830 aa12.24□□□□□ -0.45
SF3A1-207ENST00000471342 FBXO33Q7Z6M2 555 aa12.24□□□□□ -0.45
SF3A1-207ENST00000471342 TBC1D16Q8TBP0 767 aa12.24□□□□□ -0.45
SF3A1-207ENST00000471342 FAM84BQ96KN1 310 aaPredicted RBP12.24□□□□□ -0.45
SF3A1-207ENST00000471342 CCDC8Q9H0W5 538 aaPredicted RBP12.24□□□□□ -0.45
SF3A1-207ENST00000471342 A0A1B0GUL7 405 aa12.23□□□□□ -0.45
SF3A1-207ENST00000471342 APBB1O00213 710 aa12.23□□□□□ -0.45
SF3A1-207ENST00000471342 GSPT1P15170 499 aaKnown RBP12.23□□□□□ -0.45
SF3A1-207ENST00000471342 ALDH1B1P30837 517 aa12.23□□□□□ -0.45
SF3A1-207ENST00000471342 IGHMBP2P38935 993 aaKnown RBP12.23□□□□□ -0.45
SF3A1-207ENST00000471342 TSHZ3Q63HK5 1081 aa12.23□□□□□ -0.45
SF3A1-207ENST00000471342 TTLL6Q8N841 843 aa12.23□□□□□ -0.45
SF3A1-207ENST00000471342 RPGRQ92834 1020 aaKnown RBP12.23□□□□□ -0.45
SF3A1-207ENST00000471342 CNKSR1Q969H4 720 aa12.23□□□□□ -0.45
SF3A1-207ENST00000471342 ZNF622Q969S3 477 aaKnown RBP eCLIP12.23□□□□□ -0.45
SF3A1-207ENST00000471342 CNNM1Q9NRU3 951 aa12.23□□□□□ -0.45
SF3A1-207ENST00000471342 C21orf2O43822 256 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 YBX3P16989 372 aaKnown RBP eCLIP12.22□□□□□ -0.451e-8■□□□□ 10
SF3A1-207ENST00000471342 PDE1AP54750 535 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 UBE4AQ14139 1066 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 HSP90AB4PQ58FF6 505 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 METTL24Q5JXM2 366 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 XAGE2Q96GT9 111 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 PIM2Q9P1W9 311 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 CEP126Q9P2H0 1117 aa12.22□□□□□ -0.45
SF3A1-207ENST00000471342 PHKA1P46020 1223 aa12.21□□□□□ -0.45
SF3A1-207ENST00000471342 BCAMP50895 628 aa12.21□□□□□ -0.45
SF3A1-207ENST00000471342 TMC4Q7Z404 712 aa12.21□□□□□ -0.45
SF3A1-207ENST00000471342 ERC1Q8IUD2 1116 aa12.21□□□□□ -0.45
SF3A1-207ENST00000471342 LPIN2Q92539 896 aa12.21□□□□□ -0.45
SF3A1-207ENST00000471342 ZNF512BQ96KM6 892 aaPredicted RBP12.21□□□□□ -0.45
SF3A1-207ENST00000471342 MPHOSPH8Q99549 860 aa12.21□□□□□ -0.45
SF3A1-207ENST00000471342 XDHP47989 1333 aa12.2□□□□□ -0.46
SF3A1-207ENST00000471342 PUM3Q15397 648 aaKnown RBP12.2□□□□□ -0.46
SF3A1-207ENST00000471342 ATP2B3Q16720 1220 aa12.2□□□□□ -0.46
SF3A1-207ENST00000471342 AACSQ86V21 672 aa12.2□□□□□ -0.46
SF3A1-207ENST00000471342 WWC3Q9ULE0 1092 aa12.2□□□□□ -0.46
SF3A1-207ENST00000471342 LEMD3Q9Y2U8 911 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms