RNA–Protein interactions for RNA: ENST00000470724.5

NXF3-205, Transcript of nuclear RNA export factor 3, human

TSL 3

Gene NXF3, Length 607 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF3-205	ENST00000470724	RTL9	Q8NET4	1388 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	GNAI3	P08754	354 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	MS4A1	P11836	297 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	DOK7	Q18PE1	504 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	INTS3	Q68E01	1043 aa	Known RBP	12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	HELB	Q8NG08	1087 aa	Predicted RBP	12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	TBC1D16	Q8TBP0	767 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	PANK1	Q8TE04	598 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	ANKRD2	Q9GZV1	360 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	RRAGC	Q9HB90	399 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	MINPP1	Q9UNW1	487 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	UTY	O14607	1347 aa		12.07	□□□□□ -0.48
NXF3-205	ENST00000470724	DDN	O94850	711 aa	Predicted RBP	12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	ATP2B4	P23634	1241 aa		12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	ANKRD44	Q8N8A2	993 aa		12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	FBXW7	Q969H0	707 aa		12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	DBNDD1	Q9H9R9	158 aa		12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	NMRK2	Q9NPI5	230 aa		12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	POLL	Q9UGP5	575 aa		12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.06	□□□□□ -0.48
NXF3-205	ENST00000470724	GLTPD2	A6NH11	291 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	TAF5L	O75529	589 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	GNAI2	P04899	355 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	CHRND	Q07001	517 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	KIAA2012	Q0VF49	1180 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	KLHDC4	Q8TBB5	520 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	KAZALD1	Q96I82	304 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	ZNF541	Q9H0D2	1346 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	LAMB2	P55268	1798 aa		12.05	□□□□□ -0.48
NXF3-205	ENST00000470724	RAD17	O75943	681 aa		12.04	□□□□□ -0.48
NXF3-205	ENST00000470724	METTL24	Q5JXM2	366 aa		12.04	□□□□□ -0.48
NXF3-205	ENST00000470724	SIL1	Q9H173	461 aa		12.04	□□□□□ -0.48
NXF3-205	ENST00000470724	VPS33B	Q9H267	617 aa		12.04	□□□□□ -0.48
NXF3-205	ENST00000470724	C1orf115	Q9H7X2	142 aa		12.04	□□□□□ -0.48
NXF3-205	ENST00000470724	ZNRF3	Q9ULT6	936 aa		12.04	□□□□□ -0.48
NXF3-205	ENST00000470724	ECE2	O60344	883 aa		12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	RLBP1	P12271	317 aa		12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	LMOD1	P29536	600 aa	Predicted RBP	12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	RABL6	Q3YEC7	729 aa	Predicted RBP	12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	PUS3	Q9BZE2	481 aa	Known RBP	12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	PODXL2	Q9NZ53	605 aa		12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	ZNF804B	A4D1E1	1349 aa		12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	CACNA1F	O60840	1977 aa		12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	COL4A1	P02462	1669 aa		12.03	□□□□□ -0.48
NXF3-205	ENST00000470724	WTIP	A6NIX2	430 aa	Predicted RBP	12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	FZD9	O00144	591 aa		12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	SRGAP3	O43295	1099 aa		12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	LRRC24	Q50LG9	513 aa		12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	EAPP	Q56P03	285 aa	Predicted RBP	12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	CIAPIN1	Q6FI81	312 aa		12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	LEMD3	Q9Y2U8	911 aa		12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	COG6	Q9Y2V7	657 aa		12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	SNED1	Q8TER0	1413 aa		12.02	□□□□□ -0.49
NXF3-205	ENST00000470724	CHD4	Q14839	1912 aa		12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	SNAP23	O00161	211 aa		12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	VEGFA	P15692	232 aa	Predicted RBP	12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	OS9	Q13438	667 aa	Predicted RBP	12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	TNIP1	Q15025	636 aa		12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	GPC2	Q8N158	579 aa		12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	PA2G4	Q9UQ80	394 aa	Known RBP	12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	CLEC11A	Q9Y240	323 aa		12.01	□□□□□ -0.49
NXF3-205	ENST00000470724	IQCA1L	A6NCM1	817 aa		12	□□□□□ -0.49
NXF3-205	ENST00000470724	CXCL9	Q07325	125 aa		12	□□□□□ -0.49
NXF3-205	ENST00000470724	VPS37D	Q86XT2	251 aa		12	□□□□□ -0.49
NXF3-205	ENST00000470724	HACL1	Q9UJ83	578 aa		12	□□□□□ -0.49
NXF3-205	ENST00000470724	MROH5	Q6ZUA9	1318 aa		12	□□□□□ -0.49
NXF3-205	ENST00000470724	FER1L6	Q2WGJ9	1857 aa		12	□□□□□ -0.49
NXF3-205	ENST00000470724	EYA2	O00167	538 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	FRAT2	O75474	233 aa	Predicted RBP	11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	KLRK1	P26718	216 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	GMPS	P49915	693 aa	Predicted RBP	11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	MVP	Q14764	893 aa	Known RBP	11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	ZNF804A	Q7Z570	1209 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	BCL11A	Q9H165	835 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	DDX19B	Q9UMR2	479 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	MED23	Q9ULK4	1368 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	TIAM2	Q8IVF5	1701 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	TAF1	P21675	1872 aa		11.99	□□□□□ -0.49
NXF3-205	ENST00000470724	YDJC	A8MPS7	323 aa		11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	PSMD14	O00487	310 aa		11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	KIF3C	O14782	793 aa		11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	PTPN12	Q05209	780 aa	Known RBP	11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	C20orf194	Q5TEA3	1177 aa		11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	CHMP4B	Q9H444	224 aa	Known RBP	11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	KCNQ5	Q9NR82	932 aa		11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	CEP126	Q9P2H0	1117 aa		11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.98	□□□□□ -0.49
NXF3-205	ENST00000470724	COL4A5	P29400	1685 aa		11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	DUOX1	Q9NRD9	1551 aa		11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	ZBTB7B	O15156	539 aa	Predicted RBP	11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	IFIT1	P09914	478 aa	Known RBP	11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	SLC5A1	P13866	664 aa		11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	EPHX2	P34913	555 aa		11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	RFX5	P48382	616 aa	Predicted RBP	11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	RRP1	P56182	461 aa	Known RBP	11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	RBM26	Q5T8P6	1007 aa	Known RBP	11.97	□□□□□ -0.49
NXF3-205	ENST00000470724	TXNRD3	Q86VQ6	643 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms