RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TLL2Q9Y6L7 1015 aa22.48■■□□□ 1.19
COL7A1-208ENST00000470076 IL16Q14005 1332 aa22.48■■□□□ 1.19
COL7A1-208ENST00000470076 RPS12P25398 132 aaKnown RBP22.47■■□□□ 1.19
COL7A1-208ENST00000470076 ZEB1P37275 1124 aaPredicted RBP22.47■■□□□ 1.19
COL7A1-208ENST00000470076 NEXNQ0ZGT2 675 aa22.47■■□□□ 1.19
COL7A1-208ENST00000470076 TWISTNBQ3B726 338 aaPredicted RBP22.47■■□□□ 1.19
COL7A1-208ENST00000470076 CDC37L1Q7L3B6 337 aa22.47■■□□□ 1.19
COL7A1-208ENST00000470076 CAPNS2Q96L46 248 aa22.47■■□□□ 1.19
COL7A1-208ENST00000470076 ANKIB1Q9P2G1 1089 aa22.47■■□□□ 1.19
COL7A1-208ENST00000470076 THSD7BQ9C0I4 1608 aa22.46■■□□□ 1.19
COL7A1-208ENST00000470076 CELF2O95319 508 aaKnown RBP22.46■■□□□ 1.19
COL7A1-208ENST00000470076 DOK7Q18PE1 504 aa22.46■■□□□ 1.19
COL7A1-208ENST00000470076 PAXIP1Q6ZW49 1069 aaPredicted RBP22.46■■□□□ 1.19
COL7A1-208ENST00000470076 JARID2Q92833 1246 aaPredicted RBP22.46■■□□□ 1.19
COL7A1-208ENST00000470076 GGA1Q9UJY5 639 aa22.46■■□□□ 1.19
COL7A1-208ENST00000470076 SHTN1A0MZ66 631 aa22.45■■□□□ 1.18
COL7A1-208ENST00000470076 CAPN15O75808 1086 aa22.45■■□□□ 1.18
COL7A1-208ENST00000470076 UFL1O94874 794 aa22.45■■□□□ 1.18
COL7A1-208ENST00000470076 IGKV5-2P06315 115 aa22.45■■□□□ 1.18
COL7A1-208ENST00000470076 ANKRD18AQ8IVF6 992 aa22.45■■□□□ 1.18
COL7A1-208ENST00000470076 GPR101Q96P66 508 aaPredicted RBP22.45■■□□□ 1.18
COL7A1-208ENST00000470076 MRS2Q9HD23 443 aa22.45■■□□□ 1.18
COL7A1-208ENST00000470076 MYH3P11055 1940 aa22.45■■□□□ 1.18
COL7A1-208ENST00000470076 CYP4F22Q6NT55 531 aa22.44■■□□□ 1.18
COL7A1-208ENST00000470076 SAPCD2Q86UD0 394 aa22.44■■□□□ 1.18
COL7A1-208ENST00000470076 RTL9Q8NET4 1388 aa22.44■■□□□ 1.18
COL7A1-208ENST00000470076 CCDC85AQ96PX6 553 aaPredicted RBP22.44■■□□□ 1.18
COL7A1-208ENST00000470076 SCN9AQ15858 1988 aa22.43■■□□□ 1.18
COL7A1-208ENST00000470076 XDHP47989 1333 aa22.43■■□□□ 1.18
COL7A1-208ENST00000470076 G3V3G9 751 aa22.43■■□□□ 1.18
COL7A1-208ENST00000470076 CTSWP56202 376 aa22.43■■□□□ 1.18
COL7A1-208ENST00000470076 DCAF8Q5TAQ9 597 aa22.43■■□□□ 1.18
COL7A1-208ENST00000470076 SAMD7Q7Z3H4 446 aa22.43■■□□□ 1.18
COL7A1-208ENST00000470076 CDC5LQ99459 802 aaKnown RBP22.43■■□□□ 1.18
COL7A1-208ENST00000470076 KCNQ5Q9NR82 932 aa22.43■■□□□ 1.18
COL7A1-208ENST00000470076 CACNA1FO60840 1977 aa22.42■■□□□ 1.18
COL7A1-208ENST00000470076 SLC4A2P04920 1241 aa22.42■■□□□ 1.18
COL7A1-208ENST00000470076 LBX1P52954 281 aa22.42■■□□□ 1.18
COL7A1-208ENST00000470076 GRM1Q13255 1194 aa22.42■■□□□ 1.18
COL7A1-208ENST00000470076 HHIPL1Q96JK4 782 aa22.42■■□□□ 1.18
COL7A1-208ENST00000470076 NEURL1BA8MQ27 555 aa22.41■■□□□ 1.18
COL7A1-208ENST00000470076 ANP32CO43423 234 aa22.41■■□□□ 1.18
COL7A1-208ENST00000470076 VIL1P09327 827 aaKnown RBP22.41■■□□□ 1.18
COL7A1-208ENST00000470076 TBC1D10BQ4KMP7 808 aaPredicted RBP22.41■■□□□ 1.18
COL7A1-208ENST00000470076 G2E3Q7L622 706 aa22.41■■□□□ 1.18
COL7A1-208ENST00000470076 TTLL11Q8NHH1 800 aa22.41■■□□□ 1.18
COL7A1-208ENST00000470076 HSPA8P11142 646 aaKnown RBP22.4■■□□□ 1.18
COL7A1-208ENST00000470076 MAP2K2P36507 400 aa22.4■■□□□ 1.18
COL7A1-208ENST00000470076 CWF19L2Q2TBE0 894 aaKnown RBP22.4■■□□□ 1.18
COL7A1-208ENST00000470076 BEGAINQ9BUH8 593 aa22.4■■□□□ 1.18
COL7A1-208ENST00000470076 ZNF408Q9H9D4 720 aa22.4■■□□□ 1.18
COL7A1-208ENST00000470076 POLR2AP24928 1970 aaKnown RBP22.39■■□□□ 1.18
COL7A1-208ENST00000470076 PSME4Q14997 1843 aa22.39■■□□□ 1.17
COL7A1-208ENST00000470076 ATP2B4P23634 1241 aa22.39■■□□□ 1.17
COL7A1-208ENST00000470076 USP48Q86UV5 1035 aa22.39■■□□□ 1.17
COL7A1-208ENST00000470076 ZNF609O15014 1411 aa22.39■■□□□ 1.17
COL7A1-208ENST00000470076 FANCIQ9NVI1 1328 aa22.38■■□□□ 1.17
COL7A1-208ENST00000470076 H7C1W4 665 aa22.38■■□□□ 1.17
COL7A1-208ENST00000470076 EGFRP00533 1210 aa22.38■■□□□ 1.17
COL7A1-208ENST00000470076 FLIIQ13045 1269 aa22.38■■□□□ 1.17
COL7A1-208ENST00000470076 KRT26Q7Z3Y9 468 aa22.38■■□□□ 1.17
COL7A1-208ENST00000470076 WDR63Q8IWG1 891 aa22.38■■□□□ 1.17
COL7A1-208ENST00000470076 DCPSQ96C86 337 aaKnown RBP22.38■■□□□ 1.17
COL7A1-208ENST00000470076 GREM2Q9H772 168 aa22.38■■□□□ 1.17
COL7A1-208ENST00000470076 BSDC1Q9NW68 430 aaPredicted RBP22.38■■□□□ 1.17
COL7A1-208ENST00000470076 ZNF316A6NFI3 1004 aaPredicted RBP22.37■■□□□ 1.17
COL7A1-208ENST00000470076 KIF4BQ2VIQ3 1234 aa22.37■■□□□ 1.17
COL7A1-208ENST00000470076 RBM26Q5T8P6 1007 aaKnown RBP22.37■■□□□ 1.17
COL7A1-208ENST00000470076 UBE3BQ7Z3V4 1068 aa22.37■■□□□ 1.17
COL7A1-208ENST00000470076 AGBL3Q8NEM8 1001 aa22.37■■□□□ 1.17
COL7A1-208ENST00000470076 SPEF2Q9C093 1822 aa22.36■■□□□ 1.17
COL7A1-208ENST00000470076 RSBN1LQ6PCB5 846 aaPredicted RBP22.36■■□□□ 1.17
COL7A1-208ENST00000470076 PODNQ7Z5L7 613 aa22.36■■□□□ 1.17
COL7A1-208ENST00000470076 MINPP1Q9UNW1 487 aa22.36■■□□□ 1.17
COL7A1-208ENST00000470076 AOC2O75106 756 aa22.35■■□□□ 1.17
COL7A1-208ENST00000470076 FKBP5Q13451 457 aaPredicted RBP22.35■■□□□ 1.17
COL7A1-208ENST00000470076 GCKRQ14397 625 aa22.35■■□□□ 1.17
COL7A1-208ENST00000470076 DNAAF4Q8WXU2 420 aa22.35■■□□□ 1.17
COL7A1-208ENST00000470076 PLA2G12BQ9BX93 195 aa22.35■■□□□ 1.17
COL7A1-208ENST00000470076 MYH16Q9H6N6 1097 aa22.35■■□□□ 1.17
COL7A1-208ENST00000470076 ZNF280AP59817 542 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-208ENST00000470076 LINS1Q8NG48 757 aa22.34■■□□□ 1.17
COL7A1-208ENST00000470076 SALL2Q9Y467 1007 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-208ENST00000470076 MED23Q9ULK4 1368 aa22.34■■□□□ 1.17
COL7A1-208ENST00000470076 USP17L3A6NCW0 530 aa22.33■■□□□ 1.17
COL7A1-208ENST00000470076 USP17L4A6NCW7 530 aa22.33■■□□□ 1.17
COL7A1-208ENST00000470076 VAMP4O75379 141 aa22.33■■□□□ 1.17
COL7A1-208ENST00000470076 HUNKP57058 714 aa22.33■■□□□ 1.17
COL7A1-208ENST00000470076 USP17L1Q7RTZ2 530 aa22.33■■□□□ 1.17
COL7A1-208ENST00000470076 CA12O43570 354 aa22.32■■□□□ 1.16
COL7A1-208ENST00000470076 IGHMBP2P38935 993 aaKnown RBP22.32■■□□□ 1.16
COL7A1-208ENST00000470076 CCT4P50991 539 aaKnown RBP22.32■■□□□ 1.16
COL7A1-208ENST00000470076 DLK2Q6UY11 383 aa22.32■■□□□ 1.16
COL7A1-208ENST00000470076 SULF1Q8IWU6 871 aa22.32■■□□□ 1.16
COL7A1-208ENST00000470076 GMLQ99445 158 aa22.32■■□□□ 1.16
COL7A1-208ENST00000470076 GGA3Q9NZ52 723 aa22.32■■□□□ 1.16
COL7A1-208ENST00000470076 ADM5C9JUS6 153 aa22.31■■□□□ 1.16
COL7A1-208ENST00000470076 USP17L8P0C7I0 530 aa22.31■■□□□ 1.16
COL7A1-208ENST00000470076 BRPF1P55201 1214 aaPredicted RBP22.31■■□□□ 1.16
COL7A1-208ENST00000470076 CASP7P55210 303 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 157 ms