RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HMG20BQ9P0W2 317 aa22.69■■□□□ 1.22
VIM-203ENST00000469543 IL15P40933 162 aaPredicted RBP22.69■■□□□ 1.22
VIM-203ENST00000469543 SCARF1Q14162 830 aa22.69■■□□□ 1.22
VIM-203ENST00000469543 HLFQ16534 295 aa22.69■■□□□ 1.22
VIM-203ENST00000469543 BTG4Q9NY30 223 aa22.69■■□□□ 1.22
VIM-203ENST00000469543 USP25Q9UHP3 1055 aa22.69■■□□□ 1.22
VIM-203ENST00000469543 FGD1P98174 961 aa22.68■■□□□ 1.22
VIM-203ENST00000469543 SYTL4Q96C24 671 aaPredicted RBP22.67■■□□□ 1.22
VIM-203ENST00000469543 TCIRG1Q13488 830 aa22.67■■□□□ 1.22
VIM-203ENST00000469543 ANKRD1Q15327 319 aa22.67■■□□□ 1.22
VIM-203ENST00000469543 CCDC57Q2TAC2 916 aa22.67■■□□□ 1.22
VIM-203ENST00000469543 CCT2P78371 535 aaKnown RBP22.66■■□□□ 1.22
VIM-203ENST00000469543 PLCB2Q00722 1185 aa22.66■■□□□ 1.22
VIM-203ENST00000469543 SCRN1Q12765 414 aa22.66■■□□□ 1.22
VIM-203ENST00000469543 ZNF830Q96NB3 372 aaPredicted RBP22.66■■□□□ 1.22
VIM-203ENST00000469543 NAP1L2Q9ULW6 460 aaPredicted RBP22.66■■□□□ 1.22
VIM-203ENST00000469543 HSPD1P10809 573 aaKnown RBP22.66■■□□□ 1.22
VIM-203ENST00000469543 LIG1P18858 919 aa22.66■■□□□ 1.22
VIM-203ENST00000469543 APOBRQ0VD83 1088 aa22.66■■□□□ 1.22
VIM-203ENST00000469543 NCOA5Q9HCD5 579 aaKnown RBP22.66■■□□□ 1.22
VIM-203ENST00000469543 ATG3Q9NT62 314 aa22.66■■□□□ 1.22
VIM-203ENST00000469543 U3KPZ7 1027 aaPredicted RBP22.66■■□□□ 1.22
VIM-203ENST00000469543 M0R2C6 588 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 OSBP2Q969R2 916 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 ISCA1Q9BUE6 129 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 GPHNQ9NQX3 736 aaPredicted RBP22.65■■□□□ 1.22
VIM-203ENST00000469543 NOL7Q9UMY1 257 aaKnown RBP22.65■■□□□ 1.22
VIM-203ENST00000469543 PHF14O94880 888 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 CEBPZQ03701 1054 aaKnown RBP22.65■■□□□ 1.22
VIM-203ENST00000469543 GTF3C6Q969F1 213 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 SLC4A9Q96Q91 983 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 CEP126Q9P2H0 1117 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 HAND2P61296 217 aa22.65■■□□□ 1.22
VIM-203ENST00000469543 MAST3O60307 1309 aa22.64■■□□□ 1.22
VIM-203ENST00000469543 XAGE2Q96GT9 111 aa22.64■■□□□ 1.21
VIM-203ENST00000469543 GORABQ5T7V8 394 aa22.64■■□□□ 1.21
VIM-203ENST00000469543 ABCC6O95255 1503 aa22.63■■□□□ 1.21
VIM-203ENST00000469543 ZMYM1Q5SVZ6 1142 aa22.63■■□□□ 1.21
VIM-203ENST00000469543 KRT85P78386 507 aa22.63■■□□□ 1.21
VIM-203ENST00000469543 KRT32Q14532 448 aa22.63■■□□□ 1.21
VIM-203ENST00000469543 FTOQ9C0B1 505 aaKnown RBP eCLIP22.62■■□□□ 1.21
VIM-203ENST00000469543 ALDH8A1Q9H2A2 487 aaPredicted RBP22.62■■□□□ 1.21
VIM-203ENST00000469543 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.62■■□□□ 1.21
VIM-203ENST00000469543 CKAP2LQ8IYA6 745 aa22.62■■□□□ 1.21
VIM-203ENST00000469543 SH3TC1Q8TE82 1336 aa22.62■■□□□ 1.21
VIM-203ENST00000469543 LAMB4A4D0S4 1761 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 E7EWF7 191 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 AP5Z1O43299 807 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 TJP1Q07157 1748 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 A0A0G2JS52 829 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 RNF113AO15541 343 aaKnown RBP22.61■■□□□ 1.21
VIM-203ENST00000469543 CTDNEP1O95476 244 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 WASHC4Q2M389 1173 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 TAF7LQ5H9L4 462 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 GREM2Q9H772 168 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 TBC1D2BQ9UPU7 963 aa22.61■■□□□ 1.21
VIM-203ENST00000469543 FOXP2O15409 715 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 PTMAP06454 111 aaKnown RBP22.6■■□□□ 1.21
VIM-203ENST00000469543 PDCP20941 246 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 ZAP70P43403 619 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 DHX32Q7L7V1 743 aaKnown RBP22.6■■□□□ 1.21
VIM-203ENST00000469543 RAB11FIP4Q86YS3 637 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 FUCA2Q9BTY2 467 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 GUCY1B3Q02153 619 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 SPATA32Q96LK8 384 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 HELLSQ9NRZ9 838 aa22.6■■□□□ 1.21
VIM-203ENST00000469543 NUP188Q5SRE5 1749 aa22.59■■□□□ 1.21
VIM-203ENST00000469543 TTC39AQ5SRH9 613 aa22.59■■□□□ 1.21
VIM-203ENST00000469543 PUS7LQ9H0K6 701 aaKnown RBP22.59■■□□□ 1.21
VIM-203ENST00000469543 GPR108Q9NPR9 543 aa22.59■■□□□ 1.21
VIM-203ENST00000469543 ZKSCAN5Q9Y2L8 839 aa22.59■■□□□ 1.21
VIM-203ENST00000469543 UBR2Q8IWV8 1755 aa22.59■■□□□ 1.21
VIM-203ENST00000469543 PARP4Q9UKK3 1724 aaKnown RBP22.59■■□□□ 1.21
VIM-203ENST00000469543 ADCY5O95622 1261 aa22.59■■□□□ 1.21
VIM-203ENST00000469543 DACT1Q9NYF0 836 aa22.59■■□□□ 1.21
VIM-203ENST00000469543 PALLDQ8WX93 1383 aa22.58■■□□□ 1.21
VIM-203ENST00000469543 IFIT5Q13325 482 aaKnown RBP22.58■■□□□ 1.21
VIM-203ENST00000469543 KIF6Q6ZMV9 814 aa22.58■■□□□ 1.21
VIM-203ENST00000469543 LEO1Q8WVC0 666 aaPredicted RBP22.58■■□□□ 1.21
VIM-203ENST00000469543 TNS2Q63HR2 1409 aa22.58■■□□□ 1.21
VIM-203ENST00000469543 FAM177BA6PVY3 158 aa22.58■■□□□ 1.2
VIM-203ENST00000469543 H3BQV1 296 aa22.58■■□□□ 1.2
VIM-203ENST00000469543 SNAP23O00161 211 aa22.58■■□□□ 1.2
VIM-203ENST00000469543 CIAO1O76071 339 aa22.58■■□□□ 1.2
VIM-203ENST00000469543 IFFO2Q5TF58 517 aa22.58■■□□□ 1.2
VIM-203ENST00000469543 PGBD1Q96JS3 809 aa22.58■■□□□ 1.2
VIM-203ENST00000469543 ZBTB1Q9Y2K1 713 aa22.58■■□□□ 1.2
VIM-203ENST00000469543 CCDC158Q5M9N0 1113 aa22.57■■□□□ 1.2
VIM-203ENST00000469543 DENND2AQ9ULE3 1009 aa22.57■■□□□ 1.2
VIM-203ENST00000469543 SHANK3Q9BYB0 1731 aa22.57■■□□□ 1.2
VIM-203ENST00000469543 EXOSC10Q01780 885 aaKnown RBP22.57■■□□□ 1.2
VIM-203ENST00000469543 LDHAL6AQ6ZMR3 332 aa22.57■■□□□ 1.2
VIM-203ENST00000469543 ZBTB38Q8NAP3 1195 aaPredicted RBP22.57■■□□□ 1.2
VIM-203ENST00000469543 TAOK2Q9UL54 1235 aa22.57■■□□□ 1.2
VIM-203ENST00000469543 ITGA6P23229 1130 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 HS1BP3Q53T59 392 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 FAM184AQ8NB25 1140 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 HELBQ8NG08 1087 aaPredicted RBP22.56■■□□□ 1.2
VIM-203ENST00000469543 DSCC1Q9BVC3 393 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 TOGARAM1Q9Y4F4 1720 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms