RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 AOC3Q16853 763 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 PRPF38BQ5VTL8 546 aaKnown RBP7.18□□□□□ -1.26
PTPN4-209ENST00000469511 TYW1BQ6NUM6 668 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 GPR153Q6NV75 609 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 LARGE2Q8N3Y3 721 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 FBXW7Q969H0 707 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 GPRC5DQ9NZD1 345 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 LAMB2P55268 1798 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 TRPA1O75762 1119 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 ALDH1B1P30837 517 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 GMPSP49915 693 aaPredicted RBP7.17□□□□□ -1.26
PTPN4-209ENST00000469511 FOSBP53539 338 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 KIF23Q02241 960 aaPredicted RBP7.17□□□□□ -1.26
PTPN4-209ENST00000469511 TPTE2Q6XPS3 522 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 USP48Q86UV5 1035 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 FMNL2Q96PY5 1086 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 RNF186Q9NXI6 227 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 PGAP2Q9UHJ9 254 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 NPC1L1Q9UHC9 1359 aa7.17□□□□□ -1.26
PTPN4-209ENST00000469511 IRF6O14896 467 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 TRIM66O15016 1216 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 CA12O43570 354 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 EGFRP00533 1210 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 HUNKP57058 714 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 TEFQ10587 303 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 NEUROD2Q15784 382 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 CRY2Q49AN0 593 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 ARSIQ5FYB1 569 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 CLEC4GQ6UXB4 293 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 NGEFQ8N5V2 710 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 HHIPL1Q96JK4 782 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 PHACTR3Q96KR7 559 aa7.16□□□□□ -1.26
PTPN4-209ENST00000469511 TEX13AQ9BXU3 409 aaPredicted RBP7.16□□□□□ -1.26
PTPN4-209ENST00000469511 ADARB2Q9NS39 739 aaKnown RBP7.16□□□□□ -1.26
PTPN4-209ENST00000469511 BTBD11A6QL63 1104 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 YDJCA8MPS7 323 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 GNAT3A8MTJ3 354 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 PPIP5K2O43314 1243 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 MAP3K7O43318 606 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 RAD17O75943 681 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 NUDT7P0C024 238 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 SUSD4Q5VX71 490 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 SAMD7Q7Z3H4 446 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 NIM1KQ8IY84 436 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 CSRNP1Q96S65 589 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 NPDC1Q9NQX5 325 aaPredicted RBP7.15□□□□□ -1.26
PTPN4-209ENST00000469511 HPS5Q9UPZ3 1129 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 UBN2Q6ZU65 1347 aa7.15□□□□□ -1.26
PTPN4-209ENST00000469511 SCN9AQ15858 1988 aa7.15□□□□□ -1.27
PTPN4-209ENST00000469511 KIAA0100Q14667 2235 aaKnown RBP7.15□□□□□ -1.27
PTPN4-209ENST00000469511 ADM5C9JUS6 153 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 SNPHO15079 494 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 DIAPH1O60610 1272 aaKnown RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 ASTN2O75129 1339 aaPredicted RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 COL3A1P02461 1466 aaPredicted RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 COL4A1P02462 1669 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 HSPA5P11021 654 aaKnown RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 GPTP24298 496 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 GTF2E1P29083 439 aaPredicted RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 HOXA10P31260 410 aaPredicted RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 NOGQ13253 232 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 CNGB1Q14028 1251 aaPredicted RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 DCTN1Q14203 1278 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 RGMBQ6NW40 437 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 TTLL7Q6ZT98 887 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 NPM2Q86SE8 214 aaKnown RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 ZNF710Q8N1W2 664 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 CEMIPQ8WUJ3 1361 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 KHSRPQ92945 711 aaKnown RBP eCLIP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 KCNQ5Q9NR82 932 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 MIS18AQ9NYP9 233 aa7.14□□□□□ -1.27
PTPN4-209ENST00000469511 CNOT7Q9UIV1 285 aaKnown RBP7.14□□□□□ -1.27
PTPN4-209ENST00000469511 PPEF1O14829 653 aaPredicted RBP7.13□□□□□ -1.27
PTPN4-209ENST00000469511 FECHP22830 423 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 PDE4DQ08499 809 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 HABP4Q5JVS0 413 aaKnown RBP7.13□□□□□ -1.27
PTPN4-209ENST00000469511 CDC37L1Q7L3B6 337 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 MCM10Q7L590 875 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 ZDHHC16Q969W1 377 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 CCDC102AQ96A19 550 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 ZNF428Q96B54 188 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 CDHR5Q9HBB8 845 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 ZNRF3Q9ULT6 936 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 DLG5Q8TDM6 1919 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 LAMB4A4D0S4 1761 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 PAPPA2Q9BXP8 1791 aa7.13□□□□□ -1.27
PTPN4-209ENST00000469511 DUOX1Q9NRD9 1551 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 RIC1Q4ADV7 1423 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 U2SURPO15042 1029 aaKnown RBP7.12□□□□□ -1.27
PTPN4-209ENST00000469511 TSR1Q2NL82 804 aaKnown RBP7.12□□□□□ -1.27
PTPN4-209ENST00000469511 TBC1D10BQ4KMP7 808 aaPredicted RBP7.12□□□□□ -1.27
PTPN4-209ENST00000469511 CC2D2BQ6DHV5 1058 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 CTU1Q7Z7A3 348 aaKnown RBP7.12□□□□□ -1.27
PTPN4-209ENST00000469511 ZNF454Q8N9F8 522 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 RPGRQ92834 1020 aaKnown RBP7.12□□□□□ -1.27
PTPN4-209ENST00000469511 CRAMP1Q96RY5 1269 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 BCL2L13Q9BXK5 485 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 R3HDMLQ9H3Y0 253 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 GBA2Q9HCG7 927 aaPredicted RBP7.12□□□□□ -1.27
PTPN4-209ENST00000469511 SCAF8Q9UPN6 1271 aaKnown RBP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms