RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 XAGE2Q96GT9 111 aa23.02■■□□□ 1.28
SMC4-209ENST00000468653 DNAJC2Q99543 621 aaKnown RBP23.02■■□□□ 1.28
SMC4-209ENST00000468653 HAUS7Q99871 368 aa23.02■■□□□ 1.28
SMC4-209ENST00000468653 FSD1Q9BTV5 496 aa23.02■■□□□ 1.28
SMC4-209ENST00000468653 TFCP2L1Q9NZI6 479 aa23.02■■□□□ 1.28
SMC4-209ENST00000468653 HIP1O00291 1037 aa23.01■■□□□ 1.27
SMC4-209ENST00000468653 PDE8BO95263 885 aa23.01■■□□□ 1.27
SMC4-209ENST00000468653 BECN1Q14457 450 aa23.01■■□□□ 1.27
SMC4-209ENST00000468653 CWC27Q6UX04 472 aaKnown RBP23.01■■□□□ 1.27
SMC4-209ENST00000468653 VGLL2Q8N8G2 317 aa23.01■■□□□ 1.27
SMC4-209ENST00000468653 ANO2Q9NQ90 1003 aa23.01■■□□□ 1.27
SMC4-209ENST00000468653 LRP5O75197 1615 aa23.01■■□□□ 1.27
SMC4-209ENST00000468653 ADORA1P30542 326 aa23■■□□□ 1.27
SMC4-209ENST00000468653 ANKRD18AQ8IVF6 992 aa23■■□□□ 1.27
SMC4-209ENST00000468653 IFIT1P09914 478 aaKnown RBP22.99■■□□□ 1.27
SMC4-209ENST00000468653 TTC39AQ5SRH9 613 aa22.99■■□□□ 1.27
SMC4-209ENST00000468653 CCDC24Q8N4L8 307 aa22.99■■□□□ 1.27
SMC4-209ENST00000468653 EDC3Q96F86 508 aaKnown RBP22.99■■□□□ 1.27
SMC4-209ENST00000468653 SGSM2O43147 1006 aa22.99■■□□□ 1.27
SMC4-209ENST00000468653 ZNF827Q17R98 1081 aa22.99■■□□□ 1.27
SMC4-209ENST00000468653 CNBD1Q8NA66 436 aa22.99■■□□□ 1.27
SMC4-209ENST00000468653 HELBQ8NG08 1087 aaPredicted RBP22.99■■□□□ 1.27
SMC4-209ENST00000468653 AKT1S1Q96B36 256 aa22.99■■□□□ 1.27
SMC4-209ENST00000468653 PUM3Q15397 648 aaKnown RBP22.98■■□□□ 1.27
SMC4-209ENST00000468653 NDUFB9Q9Y6M9 179 aa22.98■■□□□ 1.27
SMC4-209ENST00000468653 SLC4A3P48751 1232 aa22.97■■□□□ 1.27
SMC4-209ENST00000468653 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.97■■□□□ 1.27
SMC4-209ENST00000468653 KIAA1211Q6ZU35 1233 aa22.96■■□□□ 1.27
SMC4-209ENST00000468653 ERICH6Q7L0X2 663 aa22.96■■□□□ 1.27
SMC4-209ENST00000468653 KIF2CQ99661 725 aa22.96■■□□□ 1.27
SMC4-209ENST00000468653 IL25Q9H293 177 aa22.96■■□□□ 1.27
SMC4-209ENST00000468653 TNS1Q9HBL0 1735 aaKnown RBP22.96■■□□□ 1.27
SMC4-209ENST00000468653 MCCP23508 829 aa22.96■■□□□ 1.27
SMC4-209ENST00000468653 LPIN2Q92539 896 aa22.96■■□□□ 1.27
SMC4-209ENST00000468653 PAG1Q9NWQ8 432 aa22.96■■□□□ 1.27
SMC4-209ENST00000468653 SLC5A1P13866 664 aa22.95■■□□□ 1.26
SMC4-209ENST00000468653 TM4SF1P30408 202 aa22.95■■□□□ 1.26
SMC4-209ENST00000468653 DDX46Q7L014 1031 aaKnown RBP22.95■■□□□ 1.26
SMC4-209ENST00000468653 FLAD1Q8NFF5 587 aa22.95■■□□□ 1.26
SMC4-209ENST00000468653 GOLIM4O00461 696 aa22.94■■□□□ 1.26
SMC4-209ENST00000468653 EPB41L2O43491 1005 aaKnown RBP22.94■■□□□ 1.26
SMC4-209ENST00000468653 TAF5LO75529 589 aa22.94■■□□□ 1.26
SMC4-209ENST00000468653 SERPINB2P05120 415 aa22.94■■□□□ 1.26
SMC4-209ENST00000468653 FGFR2P21802 821 aa22.94■■□□□ 1.26
SMC4-209ENST00000468653 NMIQ13287 307 aaPredicted RBP22.94■■□□□ 1.26
SMC4-209ENST00000468653 BSDC1Q9NW68 430 aaPredicted RBP22.94■■□□□ 1.26
SMC4-209ENST00000468653 CHRNDQ07001 517 aa22.94■■□□□ 1.26
SMC4-209ENST00000468653 KBTBD3Q8NAB2 608 aa22.94■■□□□ 1.26
SMC4-209ENST00000468653 SPEF2Q9C093 1822 aa22.93■■□□□ 1.26
SMC4-209ENST00000468653 FKBP4Q02790 459 aaKnown RBP eCLIP22.93■■□□□ 1.26
SMC4-209ENST00000468653 PRR5LQ6MZQ0 368 aa22.93■■□□□ 1.26
SMC4-209ENST00000468653 COL23A1Q86Y22 540 aaPredicted RBP22.93■■□□□ 1.26
SMC4-209ENST00000468653 FAM227BQ96M60 508 aa22.93■■□□□ 1.26
SMC4-209ENST00000468653 RFX7Q2KHR2 1363 aa22.93■■□□□ 1.26
SMC4-209ENST00000468653 RPS8P62241 208 aaKnown RBP22.92■■□□□ 1.26
SMC4-209ENST00000468653 ST5P78524 1137 aa22.92■■□□□ 1.26
SMC4-209ENST00000468653 CELF1Q92879 486 aaKnown RBP22.92■■□□□ 1.26
SMC4-209ENST00000468653 TBC1D2Q9BYX2 928 aa22.91■■□□□ 1.26
SMC4-209ENST00000468653 RAD50Q92878 1312 aa22.91■■□□□ 1.26
SMC4-209ENST00000468653 CASZ1Q86V15 1759 aa22.91■■□□□ 1.26
SMC4-209ENST00000468653 NLGN1Q8N2Q7 840 aa22.91■■□□□ 1.26
SMC4-209ENST00000468653 ZNF512BQ96KM6 892 aaPredicted RBP22.91■■□□□ 1.26
SMC4-209ENST00000468653 LSG1Q9H089 658 aaKnown RBP22.91■■□□□ 1.26
SMC4-209ENST00000468653 SNRKQ9NRH2 765 aa22.91■■□□□ 1.26
SMC4-209ENST00000468653 RGPD3A6NKT7 1758 aaPredicted RBP22.9■■□□□ 1.26
SMC4-209ENST00000468653 RGPD4Q7Z3J3 1758 aa22.9■■□□□ 1.26
SMC4-209ENST00000468653 EN1Q05925 392 aaPredicted RBP22.9■■□□□ 1.26
SMC4-209ENST00000468653 RABEP1Q15276 862 aa22.9■■□□□ 1.26
SMC4-209ENST00000468653 CCDC102BQ68D86 513 aa22.9■■□□□ 1.26
SMC4-209ENST00000468653 HSCBQ8IWL3 235 aa22.9■■□□□ 1.26
SMC4-209ENST00000468653 COL4A1P02462 1669 aa22.89■■□□□ 1.26
SMC4-209ENST00000468653 A0A0D9SFI3 127 aa22.89■■□□□ 1.26
SMC4-209ENST00000468653 UQCRFS1P1P0C7P4 283 aa22.89■■□□□ 1.26
SMC4-209ENST00000468653 DDR1Q08345 913 aa22.89■■□□□ 1.26
SMC4-209ENST00000468653 TICAM2Q86XR7 235 aa22.89■■□□□ 1.26
SMC4-209ENST00000468653 MINPP1Q9UNW1 487 aa22.89■■□□□ 1.26
SMC4-209ENST00000468653 SNAP23O00161 211 aa22.89■■□□□ 1.25
SMC4-209ENST00000468653 POLRMTO00411 1230 aaKnown RBP22.89■■□□□ 1.25
SMC4-209ENST00000468653 PHKA1P46020 1223 aa22.89■■□□□ 1.25
SMC4-209ENST00000468653 SCARF1Q14162 830 aa22.89■■□□□ 1.25
SMC4-209ENST00000468653 EZH2Q15910 746 aaKnown RBP22.89■■□□□ 1.25
SMC4-209ENST00000468653 CAMKK2Q96RR4 588 aa22.89■■□□□ 1.25
SMC4-209ENST00000468653 ZAP70P43403 619 aa22.88■■□□□ 1.25
SMC4-209ENST00000468653 SF3B2Q13435 895 aaKnown RBP22.88■■□□□ 1.25
SMC4-209ENST00000468653 SNX21Q969T3 373 aa22.88■■□□□ 1.25
SMC4-209ENST00000468653 ANTXR1Q9H6X2 564 aa22.88■■□□□ 1.25
SMC4-209ENST00000468653 TAF1P21675 1872 aa22.87■■□□□ 1.25
SMC4-209ENST00000468653 MCAMP43121 646 aa22.87■■□□□ 1.25
SMC4-209ENST00000468653 LRRFIP1Q32MZ4 808 aaKnown RBP22.87■■□□□ 1.25
SMC4-209ENST00000468653 TNRC6CQ9HCJ0 1690 aaKnown RBP22.87■■□□□ 1.25
SMC4-209ENST00000468653 PNPLA7Q6ZV29 1317 aa22.87■■□□□ 1.25
SMC4-209ENST00000468653 ARID4AP29374 1257 aaPredicted RBP22.86■■□□□ 1.25
SMC4-209ENST00000468653 HSPA4P34932 840 aa22.86■■□□□ 1.25
SMC4-209ENST00000468653 ANAPC15P60006 121 aa22.86■■□□□ 1.25
SMC4-209ENST00000468653 RPGRQ92834 1020 aaKnown RBP22.86■■□□□ 1.25
SMC4-209ENST00000468653 ARAP2Q8WZ64 1704 aa22.85■■□□□ 1.25
SMC4-209ENST00000468653 PTH1RQ03431 593 aa22.85■■□□□ 1.25
SMC4-209ENST00000468653 GRAPQ13588 217 aa22.85■■□□□ 1.25
SMC4-209ENST00000468653 UBE4AQ14139 1066 aa22.85■■□□□ 1.25
SMC4-209ENST00000468653 PI16Q6UXB8 463 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms