RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 TBC1D16Q8TBP0 767 aa27.15■■□□□ 1.94
COL9A3-207ENST00000467819 CHMP4AQ9BY43 222 aa27.15■■□□□ 1.94
COL9A3-207ENST00000467819 PGAP2Q9UHJ9 254 aa27.15■■□□□ 1.94
COL9A3-207ENST00000467819 PDE8AO60658 829 aa27.14■■□□□ 1.94
COL9A3-207ENST00000467819 ECE1P42892 770 aa27.14■■□□□ 1.94
COL9A3-207ENST00000467819 CCDC152Q4G0S7 254 aa27.14■■□□□ 1.94
COL9A3-207ENST00000467819 ZC3H15Q8WU90 426 aaKnown RBP27.14■■□□□ 1.94
COL9A3-207ENST00000467819 ZNF408Q9H9D4 720 aa27.14■■□□□ 1.94
COL9A3-207ENST00000467819 MAP3K2Q9Y2U5 619 aa27.14■■□□□ 1.94
COL9A3-207ENST00000467819 KCNQ5Q9NR82 932 aa27.13■■□□□ 1.93
COL9A3-207ENST00000467819 DPF2Q92785 391 aa27.12■■□□□ 1.93
COL9A3-207ENST00000467819 ANKIB1Q9P2G1 1089 aa27.12■■□□□ 1.93
COL9A3-207ENST00000467819 RTL9Q8NET4 1388 aa27.11■■□□□ 1.93
COL9A3-207ENST00000467819 UFL1O94874 794 aa27.11■■□□□ 1.93
COL9A3-207ENST00000467819 HSPA8P11142 646 aaKnown RBP27.11■■□□□ 1.93
COL9A3-207ENST00000467819 SAMD7Q7Z3H4 446 aa27.11■■□□□ 1.93
COL9A3-207ENST00000467819 ZC3H12CQ9C0D7 883 aaKnown RBP27.11■■□□□ 1.93
COL9A3-207ENST00000467819 PODXL2Q9NZ53 605 aa27.11■■□□□ 1.93
COL9A3-207ENST00000467819 PSME4Q14997 1843 aa27.11■■□□□ 1.93
COL9A3-207ENST00000467819 PI4KAP2A4QPH2 592 aa27.1■■□□□ 1.93
COL9A3-207ENST00000467819 TBC1D10BQ4KMP7 808 aaPredicted RBP27.1■■□□□ 1.93
COL9A3-207ENST00000467819 KSR2Q6VAB6 950 aa27.1■■□□□ 1.93
COL9A3-207ENST00000467819 CDC37L1Q7L3B6 337 aa27.1■■□□□ 1.93
COL9A3-207ENST00000467819 SAPCD2Q86UD0 394 aa27.1■■□□□ 1.93
COL9A3-207ENST00000467819 PI4KAP1Q8N8J0 262 aa27.1■■□□□ 1.93
COL9A3-207ENST00000467819 STK31Q9BXU1 1019 aa27.1■■□□□ 1.93
COL9A3-207ENST00000467819 GGA1Q9UJY5 639 aa27.1■■□□□ 1.93
COL9A3-207ENST00000467819 G3V3G9 751 aa27.09■■□□□ 1.93
COL9A3-207ENST00000467819 DCAF8Q5TAQ9 597 aa27.09■■□□□ 1.93
COL9A3-207ENST00000467819 AOC2O75106 756 aa27.08■■□□□ 1.93
COL9A3-207ENST00000467819 EGFRP00533 1210 aa27.08■■□□□ 1.93
COL9A3-207ENST00000467819 RPS12P25398 132 aaKnown RBP27.08■■□□□ 1.93
COL9A3-207ENST00000467819 CCDC27Q2M243 656 aa27.08■■□□□ 1.93
COL9A3-207ENST00000467819 USP48Q86UV5 1035 aa27.08■■□□□ 1.93
COL9A3-207ENST00000467819 WWC1Q8IX03 1113 aa27.08■■□□□ 1.93
COL9A3-207ENST00000467819 IGKV5-2P06315 115 aa27.07■■□□□ 1.92
COL9A3-207ENST00000467819 TWISTNBQ3B726 338 aaPredicted RBP27.07■■□□□ 1.92
COL9A3-207ENST00000467819 RBM26Q5T8P6 1007 aaKnown RBP27.07■■□□□ 1.92
COL9A3-207ENST00000467819 ANKRD18AQ8IVF6 992 aa27.07■■□□□ 1.92
COL9A3-207ENST00000467819 BEGAINQ9BUH8 593 aa27.07■■□□□ 1.92
COL9A3-207ENST00000467819 NEXNQ0ZGT2 675 aa27.06■■□□□ 1.92
COL9A3-207ENST00000467819 DLK2Q6UY11 383 aa27.06■■□□□ 1.92
COL9A3-207ENST00000467819 CACNA1FO60840 1977 aa27.06■■□□□ 1.92
COL9A3-207ENST00000467819 CTSWP56202 376 aa27.05■■□□□ 1.92
COL9A3-207ENST00000467819 CWF19L2Q2TBE0 894 aaKnown RBP27.05■■□□□ 1.92
COL9A3-207ENST00000467819 G2E3Q7L622 706 aa27.05■■□□□ 1.92
COL9A3-207ENST00000467819 XDHP47989 1333 aa27.04■■□□□ 1.92
COL9A3-207ENST00000467819 VIL1P09327 827 aaKnown RBP27.03■■□□□ 1.92
COL9A3-207ENST00000467819 KRT26Q7Z3Y9 468 aa27.03■■□□□ 1.92
COL9A3-207ENST00000467819 SLC4A2P04920 1241 aa27.02■■□□□ 1.92
COL9A3-207ENST00000467819 MAP2K2P36507 400 aa27.02■■□□□ 1.92
COL9A3-207ENST00000467819 KIF4BQ2VIQ3 1234 aa27.02■■□□□ 1.92
COL9A3-207ENST00000467819 HHIPL1Q96JK4 782 aa27.02■■□□□ 1.92
COL9A3-207ENST00000467819 CDC5LQ99459 802 aaKnown RBP27.02■■□□□ 1.92
COL9A3-207ENST00000467819 MRS2Q9HD23 443 aa27.02■■□□□ 1.92
COL9A3-207ENST00000467819 IL16Q14005 1332 aa27.01■■□□□ 1.91
COL9A3-207ENST00000467819 NEURL1BA8MQ27 555 aa27.01■■□□□ 1.91
COL9A3-207ENST00000467819 ADM5C9JUS6 153 aa27.01■■□□□ 1.91
COL9A3-207ENST00000467819 TTLL11Q8NHH1 800 aa27.01■■□□□ 1.91
COL9A3-207ENST00000467819 DCPSQ96C86 337 aaKnown RBP27.01■■□□□ 1.91
COL9A3-207ENST00000467819 GREM2Q9H772 168 aa27.01■■□□□ 1.91
COL9A3-207ENST00000467819 ATP2B4P23634 1241 aa27■■□□□ 1.91
COL9A3-207ENST00000467819 TSKSQ9UJT2 592 aa27■■□□□ 1.91
COL9A3-207ENST00000467819 HUNKP57058 714 aa26.99■■□□□ 1.91
COL9A3-207ENST00000467819 UBE3BQ7Z3V4 1068 aa26.99■■□□□ 1.91
COL9A3-207ENST00000467819 SALL2Q9Y467 1007 aaPredicted RBP26.99■■□□□ 1.91
COL9A3-207ENST00000467819 FANCIQ9NVI1 1328 aa26.98■■□□□ 1.91
COL9A3-207ENST00000467819 RSBN1LQ6PCB5 846 aaPredicted RBP26.98■■□□□ 1.91
COL9A3-207ENST00000467819 GGA3Q9NZ52 723 aa26.98■■□□□ 1.91
COL9A3-207ENST00000467819 ASTN2O75129 1339 aaPredicted RBP26.97■■□□□ 1.91
COL9A3-207ENST00000467819 WTIPA6NIX2 430 aaPredicted RBP26.97■■□□□ 1.91
COL9A3-207ENST00000467819 FLIIQ13045 1269 aa26.97■■□□□ 1.91
COL9A3-207ENST00000467819 ZNF646O15015 1829 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-207ENST00000467819 H7C1W4 665 aa26.96■■□□□ 1.91
COL9A3-207ENST00000467819 AGBL3Q8NEM8 1001 aa26.96■■□□□ 1.91
COL9A3-207ENST00000467819 BSDC1Q9NW68 430 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-207ENST00000467819 MINPP1Q9UNW1 487 aa26.96■■□□□ 1.91
COL9A3-207ENST00000467819 CASP8AP2Q9UKL3 1982 aa26.96■■□□□ 1.91
COL9A3-207ENST00000467819 ZNF609O15014 1411 aa26.96■■□□□ 1.91
COL9A3-207ENST00000467819 ANP32CO43423 234 aa26.95■■□□□ 1.9
COL9A3-207ENST00000467819 FKBP5Q13451 457 aaPredicted RBP26.95■■□□□ 1.9
COL9A3-207ENST00000467819 GBA2Q9HCG7 927 aaPredicted RBP26.95■■□□□ 1.9
COL9A3-207ENST00000467819 MED23Q9ULK4 1368 aa26.95■■□□□ 1.9
COL9A3-207ENST00000467819 BRPF1P55201 1214 aaPredicted RBP26.94■■□□□ 1.9
COL9A3-207ENST00000467819 NCBP3Q53F19 620 aaKnown RBP26.94■■□□□ 1.9
COL9A3-207ENST00000467819 SULF1Q8IWU6 871 aa26.94■■□□□ 1.9
COL9A3-207ENST00000467819 USP17L3A6NCW0 530 aa26.93■■□□□ 1.9
COL9A3-207ENST00000467819 USP17L4A6NCW7 530 aa26.93■■□□□ 1.9
COL9A3-207ENST00000467819 ZNF280AP59817 542 aaPredicted RBP26.93■■□□□ 1.9
COL9A3-207ENST00000467819 GCKRQ14397 625 aa26.93■■□□□ 1.9
COL9A3-207ENST00000467819 USP17L1Q7RTZ2 530 aa26.93■■□□□ 1.9
COL9A3-207ENST00000467819 PODNQ7Z5L7 613 aa26.93■■□□□ 1.9
COL9A3-207ENST00000467819 C2orf69Q8N8R5 385 aa26.93■■□□□ 1.9
COL9A3-207ENST00000467819 DNAAF4Q8WXU2 420 aa26.93■■□□□ 1.9
COL9A3-207ENST00000467819 IGHMBP2P38935 993 aaKnown RBP26.92■■□□□ 1.9
COL9A3-207ENST00000467819 CCT4P50991 539 aaKnown RBP26.92■■□□□ 1.9
COL9A3-207ENST00000467819 NOGQ13253 232 aa26.92■■□□□ 1.9
COL9A3-207ENST00000467819 ZIC5Q96T25 663 aa26.92■■□□□ 1.9
COL9A3-207ENST00000467819 GMLQ99445 158 aa26.92■■□□□ 1.9
COL9A3-207ENST00000467819 USP17L8P0C7I0 530 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms