RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 RPS8P62241 208 aaKnown RBP18.9■□□□□ 0.62
SMC1A-204ENST00000463684 TBC1D16Q8TBP0 767 aa18.9■□□□□ 0.62
SMC1A-204ENST00000463684 GGA3Q9NZ52 723 aa18.9■□□□□ 0.62
SMC1A-204ENST00000463684 LAMB2P55268 1798 aa18.89■□□□□ 0.61
SMC1A-204ENST00000463684 ATP5J2-PTCD1G3V325 749 aa18.89■□□□□ 0.61
SMC1A-204ENST00000463684 TMPOP42166 694 aaKnown RBP18.89■□□□□ 0.61
SMC1A-204ENST00000463684 CDCA5Q96FF9 252 aa18.89■□□□□ 0.61
SMC1A-204ENST00000463684 CHPF2Q9P2E5 772 aa18.89■□□□□ 0.61
SMC1A-204ENST00000463684 RTL9Q8NET4 1388 aa18.89■□□□□ 0.61
SMC1A-204ENST00000463684 RTL5Q5HYW3 569 aaPredicted RBP18.88■□□□□ 0.61
SMC1A-204ENST00000463684 ISCA1Q9BUE6 129 aa18.88■□□□□ 0.61
SMC1A-204ENST00000463684 LAS1LQ9Y4W2 734 aaKnown RBP18.88■□□□□ 0.61
SMC1A-204ENST00000463684 IRS4O14654 1257 aaPredicted RBP18.87■□□□□ 0.61
SMC1A-204ENST00000463684 SCARF1Q14162 830 aa18.87■□□□□ 0.61
SMC1A-204ENST00000463684 HDGFL1Q5TGJ6 251 aa18.87■□□□□ 0.61
SMC1A-204ENST00000463684 ANKIB1Q9P2G1 1089 aa18.87■□□□□ 0.61
SMC1A-204ENST00000463684 DBF4Q9UBU7 674 aaPredicted RBP18.87■□□□□ 0.61
SMC1A-204ENST00000463684 CHL1O00533 1208 aa18.86■□□□□ 0.61
SMC1A-204ENST00000463684 HSP90B1P14625 803 aaKnown RBP18.86■□□□□ 0.61
SMC1A-204ENST00000463684 FKBP1BP68106 108 aa18.86■□□□□ 0.61
SMC1A-204ENST00000463684 KRT24Q2M2I5 525 aa18.86■□□□□ 0.61
SMC1A-204ENST00000463684 ANGEL2Q5VTE6 544 aaKnown RBP18.86■□□□□ 0.61
SMC1A-204ENST00000463684 PODXL2Q9NZ53 605 aa18.86■□□□□ 0.61
SMC1A-204ENST00000463684 ASTN2O75129 1339 aaPredicted RBP18.85■□□□□ 0.61
SMC1A-204ENST00000463684 UFL1O94874 794 aa18.85■□□□□ 0.61
SMC1A-204ENST00000463684 NEUROD2Q15784 382 aa18.85■□□□□ 0.61
SMC1A-204ENST00000463684 PKN2Q16513 984 aaKnown RBP18.85■□□□□ 0.61
SMC1A-204ENST00000463684 PRPF38BQ5VTL8 546 aaKnown RBP18.85■□□□□ 0.61
SMC1A-204ENST00000463684 RASAL3Q86YV0 1011 aa18.85■□□□□ 0.61
SMC1A-204ENST00000463684 AGBL3Q8NEM8 1001 aa18.85■□□□□ 0.61
SMC1A-204ENST00000463684 GGA1Q9UJY5 639 aa18.85■□□□□ 0.61
SMC1A-204ENST00000463684 HDAC9Q9UKV0 1011 aa18.85■□□□□ 0.61
SMC1A-204ENST00000463684 LRRC37AA6NMS7 1700 aa18.85■□□□□ 0.61
SMC1A-204ENST00000463684 TAF1P21675 1872 aa18.84■□□□□ 0.61
SMC1A-204ENST00000463684 ZNF280AP59817 542 aaPredicted RBP18.84■□□□□ 0.61
SMC1A-204ENST00000463684 TRIM28Q13263 835 aaKnown RBP18.84■□□□□ 0.61
SMC1A-204ENST00000463684 RSBN1LQ6PCB5 846 aaPredicted RBP18.84■□□□□ 0.61
SMC1A-204ENST00000463684 HYPKQ9NX55 129 aa18.84■□□□□ 0.61
SMC1A-204ENST00000463684 HOXB7P09629 217 aa18.83■□□□□ 0.6
SMC1A-204ENST00000463684 HPS5Q9UPZ3 1129 aa18.83■□□□□ 0.6
SMC1A-204ENST00000463684 USP17L8P0C7I0 530 aa18.82■□□□□ 0.6
SMC1A-204ENST00000463684 ZBTB38Q8NAP3 1195 aaPredicted RBP18.82■□□□□ 0.6
SMC1A-204ENST00000463684 MYOZ2Q9NPC6 264 aa18.82■□□□□ 0.6
SMC1A-204ENST00000463684 PITPNM2Q9BZ72 1349 aa18.81■□□□□ 0.6
SMC1A-204ENST00000463684 RIC3Q7Z5B4 369 aa18.81■□□□□ 0.6
SMC1A-204ENST00000463684 SEC31BQ9NQW1 1179 aa18.81■□□□□ 0.6
SMC1A-204ENST00000463684 TBC1D8O95759 1140 aa18.8■□□□□ 0.6
SMC1A-204ENST00000463684 CCDC152Q4G0S7 254 aa18.8■□□□□ 0.6
SMC1A-204ENST00000463684 DDX60Q8IY21 1712 aaKnown RBP18.8■□□□□ 0.6
SMC1A-204ENST00000463684 POLR2AP24928 1970 aaKnown RBP18.79■□□□□ 0.6
SMC1A-204ENST00000463684 USP17L3A6NCW0 530 aa18.79■□□□□ 0.6
SMC1A-204ENST00000463684 USP17L4A6NCW7 530 aa18.79■□□□□ 0.6
SMC1A-204ENST00000463684 TTLL12Q14166 644 aaPredicted RBP18.79■□□□□ 0.6
SMC1A-204ENST00000463684 USP17L1Q7RTZ2 530 aa18.79■□□□□ 0.6
SMC1A-204ENST00000463684 CCDC146Q8IYE0 955 aa18.79■□□□□ 0.6
SMC1A-204ENST00000463684 ZNF296Q8WUU4 475 aaPredicted RBP18.79■□□□□ 0.6
SMC1A-204ENST00000463684 AKAP11Q9UKA4 1901 aa18.78■□□□□ 0.6
SMC1A-204ENST00000463684 UBE2Q2LH0YL09 131 aa18.78■□□□□ 0.6
SMC1A-204ENST00000463684 GOLGA2Q08379 1002 aa18.78■□□□□ 0.6
SMC1A-204ENST00000463684 DUSP27Q5VZP5 1158 aa18.78■□□□□ 0.6
SMC1A-204ENST00000463684 MOB2Q70IA6 237 aa18.78■□□□□ 0.6
SMC1A-204ENST00000463684 PODNQ7Z5L7 613 aa18.78■□□□□ 0.6
SMC1A-204ENST00000463684 GMLQ99445 158 aa18.78■□□□□ 0.6
SMC1A-204ENST00000463684 ZNF609O15014 1411 aa18.77■□□□□ 0.6
SMC1A-204ENST00000463684 PDE8AO60658 829 aa18.77■□□□□ 0.6
SMC1A-204ENST00000463684 ATP2B4P23634 1241 aa18.77■□□□□ 0.6
SMC1A-204ENST00000463684 NF2P35240 595 aa18.77■□□□□ 0.6
SMC1A-204ENST00000463684 RALBP1Q15311 655 aa18.77■□□□□ 0.6
SMC1A-204ENST00000463684 ANKRD18AQ8IVF6 992 aa18.77■□□□□ 0.6
SMC1A-204ENST00000463684 TRIM35Q9UPQ4 493 aa18.77■□□□□ 0.6
SMC1A-204ENST00000463684 XDHP47989 1333 aa18.76■□□□□ 0.59
SMC1A-204ENST00000463684 TM4SF4P48230 202 aa18.76■□□□□ 0.59
SMC1A-204ENST00000463684 OGFOD1Q8N543 542 aa18.76■□□□□ 0.59
SMC1A-204ENST00000463684 MYD88Q99836 296 aa18.76■□□□□ 0.59
SMC1A-204ENST00000463684 SCAF8Q9UPN6 1271 aaKnown RBP18.76■□□□□ 0.59
SMC1A-204ENST00000463684 COL4A1P02462 1669 aa18.76■□□□□ 0.59
SMC1A-204ENST00000463684 GPR25O00155 361 aa18.75■□□□□ 0.59
SMC1A-204ENST00000463684 PCCAP05165 728 aaPredicted RBP18.75■□□□□ 0.59
SMC1A-204ENST00000463684 PRAMEF18Q5VWM3 479 aa18.75■□□□□ 0.59
SMC1A-204ENST00000463684 CCDC191Q8NCU4 936 aa18.75■□□□□ 0.59
SMC1A-204ENST00000463684 RUNDC1Q96C34 613 aa18.75■□□□□ 0.59
SMC1A-204ENST00000463684 CCDC85AQ96PX6 553 aaPredicted RBP18.75■□□□□ 0.59
SMC1A-204ENST00000463684 PAPPA2Q9BXP8 1791 aa18.75■□□□□ 0.59
SMC1A-204ENST00000463684 PDE4DIPQ5VU43 2346 aa18.74■□□□□ 0.59
SMC1A-204ENST00000463684 SREBF2Q12772 1141 aa18.74■□□□□ 0.59
SMC1A-204ENST00000463684 NBPF9Q3BBW0 867 aa18.74■□□□□ 0.59
SMC1A-204ENST00000463684 NOM1Q5C9Z4 860 aaKnown RBP18.74■□□□□ 0.59
SMC1A-204ENST00000463684 FBXO46Q6PJ61 603 aaPredicted RBP18.74■□□□□ 0.59
SMC1A-204ENST00000463684 MKRN3Q13064 507 aaKnown RBP18.73■□□□□ 0.59
SMC1A-204ENST00000463684 PHAXQ9H814 394 aaKnown RBP18.73■□□□□ 0.59
SMC1A-204ENST00000463684 CWC25Q9NXE8 425 aaPredicted RBP18.73■□□□□ 0.59
SMC1A-204ENST00000463684 SCN9AQ15858 1988 aa18.72■□□□□ 0.59
SMC1A-204ENST00000463684 FKTNO75072 461 aa18.72■□□□□ 0.59
SMC1A-204ENST00000463684 WDR43Q15061 677 aaKnown RBP eCLIP18.72■□□□□ 0.593e-7■■□□□ 12
SMC1A-204ENST00000463684 ARMC9Q7Z3E5 817 aa18.72■□□□□ 0.59
SMC1A-204ENST00000463684 JARID2Q92833 1246 aaPredicted RBP18.72■□□□□ 0.59
SMC1A-204ENST00000463684 FBXW7Q969H0 707 aa18.72■□□□□ 0.59
SMC1A-204ENST00000463684 CDC5LQ99459 802 aaKnown RBP18.72■□□□□ 0.59
SMC1A-204ENST00000463684 GCC1Q96CN9 775 aa18.71■□□□□ 0.59
SMC1A-204ENST00000463684 MBIPQ9NS73 344 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms