RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ZNF771Q7L3S4 317 aaPredicted RBP14.71□□□□□ -0.05
HDAC4-208ENST00000463007 ERC1Q8IUD2 1116 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 USP16Q9Y5T5 823 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 RFX5P48382 616 aaPredicted RBP14.71□□□□□ -0.05
HDAC4-208ENST00000463007 CASP7P55210 303 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 ST3GAL1Q11201 340 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 EPHA10Q5JZY3 1008 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 XAGE3Q8WTP9 111 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 CBX8Q9HC52 389 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 HDAC5Q9UQL6 1122 aa14.71□□□□□ -0.05
HDAC4-208ENST00000463007 WDR17Q8IZU2 1322 aa14.71□□□□□ -0.06
HDAC4-208ENST00000463007 NR1I2O75469 434 aa14.71□□□□□ -0.06
HDAC4-208ENST00000463007 PIP4K2AP48426 406 aaPredicted RBP14.71□□□□□ -0.06
HDAC4-208ENST00000463007 GUCY1B3Q02153 619 aa14.71□□□□□ -0.06
HDAC4-208ENST00000463007 NMIQ13287 307 aaPredicted RBP14.71□□□□□ -0.06
HDAC4-208ENST00000463007 RABL6Q3YEC7 729 aaPredicted RBP14.71□□□□□ -0.06
HDAC4-208ENST00000463007 FTOQ9C0B1 505 aaKnown RBP eCLIP14.71□□□□□ -0.06
HDAC4-208ENST00000463007 ECHDC1Q9NTX5 307 aa14.71□□□□□ -0.06
HDAC4-208ENST00000463007 TLR7Q9NYK1 1049 aaKnown RBP14.71□□□□□ -0.06
HDAC4-208ENST00000463007 SNRPA1P09661 255 aaKnown RBP14.7□□□□□ -0.06
HDAC4-208ENST00000463007 RUFY2Q8WXA3 655 aa14.7□□□□□ -0.06
HDAC4-208ENST00000463007 ZBTB9Q96C00 473 aa14.7□□□□□ -0.06
HDAC4-208ENST00000463007 MRVI1Q9Y6F6 885 aa14.7□□□□□ -0.06
HDAC4-208ENST00000463007 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.7□□□□□ -0.06
HDAC4-208ENST00000463007 ZNF165P49910 485 aa14.7□□□□□ -0.06
HDAC4-208ENST00000463007 MAPK8IP2Q13387 824 aaPredicted RBP14.7□□□□□ -0.06
HDAC4-208ENST00000463007 CREB3L3Q68CJ9 461 aa14.7□□□□□ -0.06
HDAC4-208ENST00000463007 FAM200AQ8TCP9 573 aa14.7□□□□□ -0.06
HDAC4-208ENST00000463007 DNAJC5Q9H3Z4 198 aa14.7□□□□□ -0.06
HDAC4-208ENST00000463007 NKX1-1Q15270 411 aaPredicted RBP14.69□□□□□ -0.06
HDAC4-208ENST00000463007 COPS6Q7L5N1 327 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 EAF2Q96CJ1 260 aaPredicted RBP14.69□□□□□ -0.06
HDAC4-208ENST00000463007 H3BQV1 296 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 IFFO2Q5TF58 517 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 FMNL2Q96PY5 1086 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 DMTNQ08495 405 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 BLOC1S2Q6QNY1 142 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 FUCA2Q9BTY2 467 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 CLIP2Q9UDT6 1046 aa14.69□□□□□ -0.06
HDAC4-208ENST00000463007 A0A0D9SFI3 127 aa14.68□□□□□ -0.06
HDAC4-208ENST00000463007 HSPA2P54652 639 aa14.68□□□□□ -0.06
HDAC4-208ENST00000463007 CCDC129Q6ZRS4 1044 aa14.68□□□□□ -0.06
HDAC4-208ENST00000463007 TMEM87AQ8NBN3 555 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 COPRSQ9NQ92 184 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 SPTLC3Q9NUV7 552 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 MYL6BP14649 208 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 MED23Q9ULK4 1368 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 CCDC144BQ3MJ40 725 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 SLFNL1Q499Z3 407 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 ANKRD13DQ6ZTN6 518 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 CCDC144CPQ8IYA2 1237 aa14.67□□□□□ -0.06
HDAC4-208ENST00000463007 CACTINQ8WUQ7 758 aaKnown RBP14.67□□□□□ -0.06
HDAC4-208ENST00000463007 DNAJC2Q99543 621 aaKnown RBP14.67□□□□□ -0.06
HDAC4-208ENST00000463007 PLCH1Q4KWH8 1693 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 NBPF26B4DH59 902 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 GOLGA6L19H0YKK7 550 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 NBPF14Q5TI25 921 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 VPS53Q5VIR6 699 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 NBPF10Q6P3W6 841 aaKnown RBP14.66□□□□□ -0.06
HDAC4-208ENST00000463007 RIC3Q7Z5B4 369 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 NBPF15Q8N660 670 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 GPATCH3Q96I76 525 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 CCDC171Q6TFL3 1326 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 USP27XA6NNY8 438 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 G3BP1Q13283 466 aaKnown RBP eCLIP14.66□□□□□ -0.06
HDAC4-208ENST00000463007 ZNF589Q86UQ0 364 aaPredicted RBP14.66□□□□□ -0.06
HDAC4-208ENST00000463007 CCDC112Q8NEF3 446 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 EVI5LQ96CN4 794 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 PCDH11XQ9BZA7 1347 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 PCDH11YQ9BZA8 1340 aa14.66□□□□□ -0.06
HDAC4-208ENST00000463007 CCT2P78371 535 aaKnown RBP14.65□□□□□ -0.06
HDAC4-208ENST00000463007 CHST3Q7LGC8 479 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 SEC62Q99442 399 aaKnown RBP14.65□□□□□ -0.06
HDAC4-208ENST00000463007 MYD88Q99836 296 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 WNK3Q9BYP7 1800 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 BECN2A8MW95 431 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 SLC27A2O14975 620 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 PTPN12Q05209 780 aaKnown RBP14.65□□□□□ -0.06
HDAC4-208ENST00000463007 ZSWIM6Q9HCJ5 1215 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 CSB-PGBD3P0DP91 1061 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 NECTIN1Q15223 517 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 ZSCAN25Q6NSZ9 544 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 BRF1Q92994 677 aa14.65□□□□□ -0.06
HDAC4-208ENST00000463007 CGNQ9P2M7 1197 aaKnown RBP14.65□□□□□ -0.06
HDAC4-208ENST00000463007 ITGB4P16144 1822 aa14.64□□□□□ -0.07
HDAC4-208ENST00000463007 ERICH4A6NGS2 130 aa14.64□□□□□ -0.07
HDAC4-208ENST00000463007 NCBP1Q09161 790 aaKnown RBP14.64□□□□□ -0.07
HDAC4-208ENST00000463007 ISM2Q6H9L7 571 aa14.64□□□□□ -0.07
HDAC4-208ENST00000463007 RAB11FIP4Q86YS3 637 aa14.64□□□□□ -0.07
HDAC4-208ENST00000463007 PLBD2Q8NHP8 589 aa14.64□□□□□ -0.07
HDAC4-208ENST00000463007 LEO1Q8WVC0 666 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-208ENST00000463007 SH2B1Q9NRF2 756 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-208ENST00000463007 ZSCAN31Q96LW9 406 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-208ENST00000463007 ERVV-2B6SEH9 535 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 NEXNQ0ZGT2 675 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 GORABQ5T7V8 394 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 RFX7Q2KHR2 1363 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 TTC5Q8N0Z6 440 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 PGBD1Q96JS3 809 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 TM6SF1Q9BZW5 370 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms