RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 AAMPQ13685 434 aa10.8□□□□□ -0.68
UBE4B-204ENST00000462658 LCE2AQ5TA79 106 aaPredicted RBP10.8□□□□□ -0.68
UBE4B-204ENST00000462658 CMTR1Q8N1G2 835 aaKnown RBP10.8□□□□□ -0.68
UBE4B-204ENST00000462658 BIN2Q9UBW5 565 aaPredicted RBP10.8□□□□□ -0.68
UBE4B-204ENST00000462658 TTC37Q6PGP7 1564 aa10.8□□□□□ -0.68
UBE4B-204ENST00000462658 EDEM1Q92611 657 aa10.79□□□□□ -0.68
UBE4B-204ENST00000462658 SLC30A3Q99726 388 aa10.79□□□□□ -0.68
UBE4B-204ENST00000462658 ZNF644Q9H582 1327 aaPredicted RBP10.79□□□□□ -0.68
UBE4B-204ENST00000462658 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.79□□□□□ -0.68
UBE4B-204ENST00000462658 CD109Q6YHK3 1445 aa10.78□□□□□ -0.68
UBE4B-204ENST00000462658 KCNQ4P56696 695 aa10.78□□□□□ -0.68
UBE4B-204ENST00000462658 ARHGAP4P98171 946 aa10.78□□□□□ -0.68
UBE4B-204ENST00000462658 DNM1Q05193 864 aaKnown RBP10.78□□□□□ -0.68
UBE4B-204ENST00000462658 LAMC2Q13753 1193 aa10.78□□□□□ -0.68
UBE4B-204ENST00000462658 RAB44Q7Z6P3 723 aaPredicted RBP10.78□□□□□ -0.68
UBE4B-204ENST00000462658 MBIPQ9NS73 344 aa10.78□□□□□ -0.68
UBE4B-204ENST00000462658 CCDC87Q9NVE4 849 aa10.78□□□□□ -0.68
UBE4B-204ENST00000462658 FRMPD1Q5SYB0 1578 aa10.77□□□□□ -0.68
UBE4B-204ENST00000462658 FZD6O60353 706 aa10.77□□□□□ -0.69
UBE4B-204ENST00000462658 BMP4P12644 408 aa10.77□□□□□ -0.69
UBE4B-204ENST00000462658 ALKBH2Q6NS38 261 aa10.77□□□□□ -0.69
UBE4B-204ENST00000462658 GZF1Q9H116 711 aaPredicted RBP10.77□□□□□ -0.69
UBE4B-204ENST00000462658 KCNMB2Q9Y691 235 aa10.77□□□□□ -0.69
UBE4B-204ENST00000462658 ITSN2Q9NZM3 1697 aa10.76□□□□□ -0.69
UBE4B-204ENST00000462658 EPB42P16452 691 aa10.76□□□□□ -0.69
UBE4B-204ENST00000462658 TRIP4Q15650 581 aaPredicted RBP10.76□□□□□ -0.69
UBE4B-204ENST00000462658 PIK3R5Q8WYR1 880 aa10.76□□□□□ -0.69
UBE4B-204ENST00000462658 NUDT16Q96DE0 195 aaKnown RBP10.76□□□□□ -0.69
UBE4B-204ENST00000462658 POLIQ9UNA4 740 aa10.76□□□□□ -0.69
UBE4B-204ENST00000462658 PTPRKQ15262 1439 aa10.75□□□□□ -0.69
UBE4B-204ENST00000462658 SPEM2Q0P670 501 aa10.75□□□□□ -0.69
UBE4B-204ENST00000462658 FAM182BQ5T319 152 aa10.75□□□□□ -0.69
UBE4B-204ENST00000462658 CAMSAP2Q08AD1 1489 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 ZBTB7CA1YPR0 619 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 PDGFAP04085 211 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 KRT25Q7Z3Z0 450 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 GSX2Q9BZM3 304 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 FAM13BQ9NYF5 915 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 SETD5Q9C0A6 1442 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 TEX14Q8IWB6 1497 aa10.74□□□□□ -0.69
UBE4B-204ENST00000462658 CDC42BPAQ5VT25 1732 aa10.73□□□□□ -0.69
UBE4B-204ENST00000462658 A6NHS1 94 aa10.73□□□□□ -0.69
UBE4B-204ENST00000462658 MZF1P28698 734 aaPredicted RBP10.73□□□□□ -0.69
UBE4B-204ENST00000462658 GGNBP2Q9H3C7 697 aa10.73□□□□□ -0.69
UBE4B-204ENST00000462658 PRR12Q9ULL5 1215 aa10.73□□□□□ -0.69
UBE4B-204ENST00000462658 PLCH2O75038 1416 aa10.73□□□□□ -0.69
UBE4B-204ENST00000462658 XYLBO75191 536 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 SASH3O75995 380 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 ADAMTS2O95450 1211 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 CCINQ13939 588 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 EFCAB2Q5VUJ9 269 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 BHMTQ93088 406 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 ABCC5O15440 1437 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 DAPK1P53355 1430 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 ARAP3Q8WWN8 1544 aa10.72□□□□□ -0.69
UBE4B-204ENST00000462658 UBAP1LF5GYI3 381 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 TARSP26639 723 aaKnown RBP10.71□□□□□ -0.69
UBE4B-204ENST00000462658 HNRNPMP52272 730 aaKnown RBP eCLIP10.71□□□□□ -0.69
UBE4B-204ENST00000462658 PCBP4P57723 403 aaKnown RBP10.71□□□□□ -0.69
UBE4B-204ENST00000462658 SRSF11Q05519 484 aaKnown RBP10.71□□□□□ -0.69
UBE4B-204ENST00000462658 ARHGAP5Q13017 1502 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 C8orf34Q49A92 452 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 RICTORQ6R327 1708 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 PREX2Q70Z35 1606 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 SND1Q7KZF4 910 aaKnown RBP eCLIP10.71□□□□□ -0.69
UBE4B-204ENST00000462658 SIGLEC1Q9BZZ2 1709 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 RAB3GAP2Q9H2M9 1393 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 BRPF3Q9ULD4 1205 aa10.71□□□□□ -0.69
UBE4B-204ENST00000462658 NSFL1CQ9UNZ2 370 aaKnown RBP10.71□□□□□ -0.69
UBE4B-204ENST00000462658 NFKB1P19838 968 aa10.7□□□□□ -0.7
UBE4B-204ENST00000462658 MAP2K3P46734 347 aa10.7□□□□□ -0.7
UBE4B-204ENST00000462658 SYT9Q86SS6 491 aa10.7□□□□□ -0.7
UBE4B-204ENST00000462658 RRP7BPQ9NSQ0 103 aa10.7□□□□□ -0.7
UBE4B-204ENST00000462658 KLF15Q9UIH9 416 aa10.7□□□□□ -0.7
UBE4B-204ENST00000462658 CDC42BPBQ9Y5S2 1711 aa10.7□□□□□ -0.7
UBE4B-204ENST00000462658 DNMT1P26358 1616 aaKnown RBP10.69□□□□□ -0.7
UBE4B-204ENST00000462658 HFM1A2PYH4 1435 aa10.69□□□□□ -0.7
UBE4B-204ENST00000462658 TSPY4P0CV99 314 aa10.69□□□□□ -0.7
UBE4B-204ENST00000462658 TSPY10P0CW01 314 aa10.69□□□□□ -0.7
UBE4B-204ENST00000462658 ZEB1P37275 1124 aaPredicted RBP10.69□□□□□ -0.7
UBE4B-204ENST00000462658 PNMA5Q96PV4 448 aa10.69□□□□□ -0.7
UBE4B-204ENST00000462658 ZFATQ9P243 1243 aa10.69□□□□□ -0.7
UBE4B-204ENST00000462658 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.69□□□□□ -0.7
UBE4B-204ENST00000462658 NEO1Q92859 1461 aa10.68□□□□□ -0.7
UBE4B-204ENST00000462658 AKNAQ7Z591 1439 aa10.68□□□□□ -0.7
UBE4B-204ENST00000462658 MYO5CQ9NQX4 1742 aa10.68□□□□□ -0.7
UBE4B-204ENST00000462658 EGFRP00533 1210 aa10.68□□□□□ -0.7
UBE4B-204ENST00000462658 PCSK2P16519 638 aa10.68□□□□□ -0.7
UBE4B-204ENST00000462658 ZNF468Q5VIY5 522 aaPredicted RBP10.68□□□□□ -0.7
UBE4B-204ENST00000462658 ACDQ96AP0 544 aa10.68□□□□□ -0.7
UBE4B-204ENST00000462658 PLEKHH2Q8IVE3 1493 aa10.68□□□□□ -0.7
UBE4B-204ENST00000462658 NAIPQ13075 1403 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 KIAA1107Q9UPP5 1409 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 ROCK1Q13464 1354 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 NEURL1BA8MQ27 555 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 NDUFB5O43674 189 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 MAPK1P28482 360 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 WHAMMQ8TF30 809 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 GGA1Q9UJY5 639 aa10.67□□□□□ -0.7
UBE4B-204ENST00000462658 FNDC3AQ9Y2H6 1198 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms