RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 DPF2Q92785 391 aa20.79■□□□□ 0.92
COL7A1-204ENST00000462475 CCDC85AQ96PX6 553 aaPredicted RBP20.79■□□□□ 0.92
COL7A1-204ENST00000462475 CWC25Q9NXE8 425 aaPredicted RBP20.79■□□□□ 0.92
COL7A1-204ENST00000462475 TBC1D10BQ4KMP7 808 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-204ENST00000462475 CCDC184Q52MB2 194 aa20.78■□□□□ 0.92
COL7A1-204ENST00000462475 CCDC30Q5VVM6 783 aa20.78■□□□□ 0.92
COL7A1-204ENST00000462475 CDC37L1Q7L3B6 337 aa20.78■□□□□ 0.92
COL7A1-204ENST00000462475 METTL22Q9BUU2 404 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-204ENST00000462475 PDE8AO60658 829 aa20.77■□□□□ 0.92
COL7A1-204ENST00000462475 UFL1O94874 794 aa20.77■□□□□ 0.92
COL7A1-204ENST00000462475 DDX58O95786 925 aaKnown RBP20.77■□□□□ 0.92
COL7A1-204ENST00000462475 HSP90B1P14625 803 aaKnown RBP20.77■□□□□ 0.92
COL7A1-204ENST00000462475 CCDC152Q4G0S7 254 aa20.77■□□□□ 0.92
COL7A1-204ENST00000462475 DLK2Q6UY11 383 aa20.77■□□□□ 0.92
COL7A1-204ENST00000462475 TSR2Q969E8 191 aaKnown RBP20.77■□□□□ 0.92
COL7A1-204ENST00000462475 PODXL2Q9NZ53 605 aa20.77■□□□□ 0.92
COL7A1-204ENST00000462475 MAP3K2Q9Y2U5 619 aa20.77■□□□□ 0.92
COL7A1-204ENST00000462475 RPS12P25398 132 aaKnown RBP20.76■□□□□ 0.91
COL7A1-204ENST00000462475 USP48Q86UV5 1035 aa20.76■□□□□ 0.91
COL7A1-204ENST00000462475 ANKIB1Q9P2G1 1089 aa20.76■□□□□ 0.91
COL7A1-204ENST00000462475 HHIPL1Q96JK4 782 aa20.75■□□□□ 0.91
COL7A1-204ENST00000462475 ZC3H12CQ9C0D7 883 aaKnown RBP20.75■□□□□ 0.91
COL7A1-204ENST00000462475 GGA1Q9UJY5 639 aa20.75■□□□□ 0.91
COL7A1-204ENST00000462475 IGKV5-2P06315 115 aa20.74■□□□□ 0.91
COL7A1-204ENST00000462475 MAP2K2P36507 400 aa20.74■□□□□ 0.91
COL7A1-204ENST00000462475 BEGAINQ9BUH8 593 aa20.74■□□□□ 0.91
COL7A1-204ENST00000462475 SCN9AQ15858 1988 aa20.74■□□□□ 0.91
COL7A1-204ENST00000462475 PI4KAP2A4QPH2 592 aa20.73■□□□□ 0.91
COL7A1-204ENST00000462475 RBM26Q5T8P6 1007 aaKnown RBP20.73■□□□□ 0.91
COL7A1-204ENST00000462475 PI4KAP1Q8N8J0 262 aa20.73■□□□□ 0.91
COL7A1-204ENST00000462475 TSKSQ9UJT2 592 aa20.73■□□□□ 0.91
COL7A1-204ENST00000462475 ADM5C9JUS6 153 aa20.72■□□□□ 0.91
COL7A1-204ENST00000462475 VIL1P09327 827 aaKnown RBP20.72■□□□□ 0.91
COL7A1-204ENST00000462475 CTSWP56202 376 aa20.72■□□□□ 0.91
COL7A1-204ENST00000462475 KSR2Q6VAB6 950 aa20.72■□□□□ 0.91
COL7A1-204ENST00000462475 KRT26Q7Z3Y9 468 aa20.72■□□□□ 0.91
COL7A1-204ENST00000462475 ANKRD18AQ8IVF6 992 aa20.72■□□□□ 0.91
COL7A1-204ENST00000462475 CHMP4AQ9BY43 222 aa20.72■□□□□ 0.91
COL7A1-204ENST00000462475 CCDC27Q2M243 656 aa20.71■□□□□ 0.91
COL7A1-204ENST00000462475 KIF4BQ2VIQ3 1234 aa20.71■□□□□ 0.91
COL7A1-204ENST00000462475 XDHP47989 1333 aa20.71■□□□□ 0.91
COL7A1-204ENST00000462475 G3V3G9 751 aa20.7■□□□□ 0.9
COL7A1-204ENST00000462475 HUNKP57058 714 aa20.7■□□□□ 0.9
COL7A1-204ENST00000462475 CWF19L2Q2TBE0 894 aaKnown RBP20.7■□□□□ 0.9
COL7A1-204ENST00000462475 DCAF8Q5TAQ9 597 aa20.7■□□□□ 0.9
COL7A1-204ENST00000462475 G2E3Q7L622 706 aa20.7■□□□□ 0.9
COL7A1-204ENST00000462475 WWC1Q8IX03 1113 aa20.7■□□□□ 0.9
COL7A1-204ENST00000462475 STK31Q9BXU1 1019 aa20.7■□□□□ 0.9
COL7A1-204ENST00000462475 ASTN2O75129 1339 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-204ENST00000462475 BRPF1P55201 1214 aaPredicted RBP20.69■□□□□ 0.9
COL7A1-204ENST00000462475 TWISTNBQ3B726 338 aaPredicted RBP20.69■□□□□ 0.9
COL7A1-204ENST00000462475 DCPSQ96C86 337 aaKnown RBP20.69■□□□□ 0.9
COL7A1-204ENST00000462475 ABHD8Q96I13 439 aa20.69■□□□□ 0.9
COL7A1-204ENST00000462475 ZIC5Q96T25 663 aa20.69■□□□□ 0.9
COL7A1-204ENST00000462475 GGA3Q9NZ52 723 aa20.69■□□□□ 0.9
COL7A1-204ENST00000462475 ZNF609O15014 1411 aa20.69■□□□□ 0.9
COL7A1-204ENST00000462475 WTIPA6NIX2 430 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-204ENST00000462475 NEURL1BA8MQ27 555 aa20.68■□□□□ 0.9
COL7A1-204ENST00000462475 NEXNQ0ZGT2 675 aa20.68■□□□□ 0.9
COL7A1-204ENST00000462475 RSBN1LQ6PCB5 846 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-204ENST00000462475 TTLL11Q8NHH1 800 aa20.68■□□□□ 0.9
COL7A1-204ENST00000462475 CDC5LQ99459 802 aaKnown RBP20.68■□□□□ 0.9
COL7A1-204ENST00000462475 GREM2Q9H772 168 aa20.68■□□□□ 0.9
COL7A1-204ENST00000462475 ATP2B4P23634 1241 aa20.67■□□□□ 0.9
COL7A1-204ENST00000462475 ZNF280AP59817 542 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-204ENST00000462475 GBA2Q9HCG7 927 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-204ENST00000462475 NOGQ13253 232 aa20.66■□□□□ 0.9
COL7A1-204ENST00000462475 AGBL3Q8NEM8 1001 aa20.66■□□□□ 0.9
COL7A1-204ENST00000462475 IL16Q14005 1332 aa20.65■□□□□ 0.9
COL7A1-204ENST00000462475 CA12O43570 354 aa20.65■□□□□ 0.9
COL7A1-204ENST00000462475 SLC4A2P04920 1241 aa20.65■□□□□ 0.9
COL7A1-204ENST00000462475 UBE3BQ7Z3V4 1068 aa20.65■□□□□ 0.9
COL7A1-204ENST00000462475 SULF1Q8IWU6 871 aa20.65■□□□□ 0.9
COL7A1-204ENST00000462475 GMLQ99445 158 aa20.65■□□□□ 0.9
COL7A1-204ENST00000462475 BSDC1Q9NW68 430 aaPredicted RBP20.65■□□□□ 0.9
COL7A1-204ENST00000462475 MINPP1Q9UNW1 487 aa20.65■□□□□ 0.9
COL7A1-204ENST00000462475 MED23Q9ULK4 1368 aa20.64■□□□□ 0.89
COL7A1-204ENST00000462475 FANCIQ9NVI1 1328 aa20.64■□□□□ 0.89
COL7A1-204ENST00000462475 FAM155AB1AL88 458 aaPredicted RBP20.64■□□□□ 0.89
COL7A1-204ENST00000462475 RGMBQ6NW40 437 aa20.64■□□□□ 0.89
COL7A1-204ENST00000462475 C2orf69Q8N8R5 385 aa20.64■□□□□ 0.89
COL7A1-204ENST00000462475 PSME4Q14997 1843 aa20.64■□□□□ 0.89
COL7A1-204ENST00000462475 USP17L3A6NCW0 530 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 USP17L4A6NCW7 530 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 H7C1W4 665 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 FLIIQ13045 1269 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 SCARF1Q14162 830 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 ANGEL2Q5VTE6 544 aaKnown RBP20.63■□□□□ 0.89
COL7A1-204ENST00000462475 USP17L1Q7RTZ2 530 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 PODNQ7Z5L7 613 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 CDCA5Q96FF9 252 aa20.63■□□□□ 0.89
COL7A1-204ENST00000462475 SPEF2Q9C093 1822 aa20.62■□□□□ 0.89
COL7A1-204ENST00000462475 USP17L8P0C7I0 530 aa20.62■□□□□ 0.89
COL7A1-204ENST00000462475 GCKRQ14397 625 aa20.62■□□□□ 0.89
COL7A1-204ENST00000462475 MRS2Q9HD23 443 aa20.62■□□□□ 0.89
COL7A1-204ENST00000462475 MYOZ2Q9NPC6 264 aa20.62■□□□□ 0.89
COL7A1-204ENST00000462475 MYH3P11055 1940 aa20.61■□□□□ 0.89
COL7A1-204ENST00000462475 CCT4P50991 539 aaKnown RBP20.61■□□□□ 0.89
COL7A1-204ENST00000462475 FAM161AQ3B820 660 aa20.61■□□□□ 0.89
COL7A1-204ENST00000462475 MXD3Q9BW11 206 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms