RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 NPAS3Q8IXF0 933 aa6.58□□□□□ -1.36
CSMD3-205ENST00000462254 GPR161Q8N6U8 529 aaKnown RBP6.58□□□□□ -1.36
CSMD3-205ENST00000462254 SIN3AQ96ST3 1273 aa6.58□□□□□ -1.36
CSMD3-205ENST00000462254 HCN4Q9Y3Q4 1203 aa6.58□□□□□ -1.36
CSMD3-205ENST00000462254 PTPRTO14522 1441 aa6.58□□□□□ -1.36
CSMD3-205ENST00000462254 ARHGAP31Q2M1Z3 1444 aa6.58□□□□□ -1.36
CSMD3-205ENST00000462254 SPATA31D1Q6ZQQ2 1576 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 WFS1O76024 890 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 TCF3P15923 654 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 MLECQ14165 292 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 OCLNQ16625 522 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 SWI5Q1ZZU3 235 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 C7orf43Q8WVR3 580 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 C8orf37Q96NL8 207 aa6.57□□□□□ -1.36
CSMD3-205ENST00000462254 C2orf49Q9BVC5 232 aaPredicted RBP6.57□□□□□ -1.36
CSMD3-205ENST00000462254 ERVK-7P63135 1459 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 CDC14CA4D256 554 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 ZNF16P17020 682 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-205ENST00000462254 IGFBP4P22692 258 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 POTEAQ6S8J7 498 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 TRIM22Q8IYM9 498 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 SLC16A10Q8TF71 515 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 NANOS1Q8WY41 292 aaKnown RBP6.56□□□□□ -1.36
CSMD3-205ENST00000462254 ZNF837Q96EG3 531 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-205ENST00000462254 DRC1Q96MC2 740 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 NOS1P29475 1434 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 NEURL4Q96JN8 1562 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 UBR1Q8IWV7 1749 aa6.56□□□□□ -1.36
CSMD3-205ENST00000462254 ADGRB3O60242 1522 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 KDM5AP29375 1690 aaKnown RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 ARID4BQ4LE39 1312 aaPredicted RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 WASHC2CQ9Y4E1 1318 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 TMEM131LA2VDJ0 1609 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 MYO3AQ8NEV4 1616 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 VSIG8P0DPA2 414 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 HIRAP54198 1017 aaPredicted RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 FKBP5Q13451 457 aaPredicted RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 NBPF1Q3BBV0 1214 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 ARSJQ5FYB0 599 aaPredicted RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 STAG2Q8N3U4 1231 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 SREK1Q8WXA9 508 aaKnown RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 CLP1Q92989 425 aaKnown RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 GTPBP3Q969Y2 492 aaKnown RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 NGLY1Q96IV0 654 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 ZDHHC3Q9NYG2 299 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 CNTLNQ9NXG0 1405 aa6.55□□□□□ -1.36
CSMD3-205ENST00000462254 ZNF142P52746 1687 aaPredicted RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 SETD1BQ9UPS6 1966 aaKnown RBP6.55□□□□□ -1.36
CSMD3-205ENST00000462254 CCDC144AA2RUR9 1427 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 A0A1W2PNR3 127 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 GPR25O00155 361 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 GMPRP36959 345 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 SCNN1AP37088 669 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 NEUROD1Q13562 356 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 UBAP2LQ14157 1087 aaKnown RBP6.54□□□□□ -1.36
CSMD3-205ENST00000462254 CAPN12Q6ZSI9 719 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 SV2AQ7L0J3 742 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 PGBD3Q8N328 593 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 C1orf216Q8TAB5 229 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 IRF7Q92985 503 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 ZIC5Q96T25 663 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 PHACTR1Q9C0D0 580 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 NUCKS1Q9H1E3 243 aaKnown RBP6.54□□□□□ -1.36
CSMD3-205ENST00000462254 CRISPLD1Q9H336 500 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 TRPM1Q7Z4N2 1603 aa6.54□□□□□ -1.36
CSMD3-205ENST00000462254 H7C1W4 665 aa6.53□□□□□ -1.36
CSMD3-205ENST00000462254 TATP17735 454 aaPredicted RBP6.53□□□□□ -1.36
CSMD3-205ENST00000462254 BICDL1Q6ZP65 573 aa6.53□□□□□ -1.36
CSMD3-205ENST00000462254 ALDH16A1Q8IZ83 802 aa6.53□□□□□ -1.36
CSMD3-205ENST00000462254 BCL2L13Q9BXK5 485 aa6.53□□□□□ -1.36
CSMD3-205ENST00000462254 CXXC1Q9P0U4 656 aaPredicted RBP6.53□□□□□ -1.36
CSMD3-205ENST00000462254 CHMP3Q9Y3E7 222 aa6.53□□□□□ -1.36
CSMD3-205ENST00000462254 SPATA31E1Q6ZUB1 1445 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 FOXO3O43524 673 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 ATP2B4P23634 1241 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 VAMP1P23763 118 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 ZEB1P37275 1124 aaPredicted RBP6.52□□□□□ -1.37
CSMD3-205ENST00000462254 KRT76Q01546 638 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 RNFT1Q5M7Z0 435 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 SPATA32Q96LK8 384 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 MKNK1Q9BUB5 465 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 ZMYM3Q14202 1370 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 TONSLQ96HA7 1378 aa6.52□□□□□ -1.37
CSMD3-205ENST00000462254 NEXMIFQ5QGS0 1516 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 SETD1AO15047 1707 aaKnown RBP6.51□□□□□ -1.37
CSMD3-205ENST00000462254 KIAA1210Q9ULL0 1709 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 PPM1GO15355 546 aaPredicted RBP6.51□□□□□ -1.37
CSMD3-205ENST00000462254 ARID4AP29374 1257 aaPredicted RBP6.51□□□□□ -1.37
CSMD3-205ENST00000462254 GAS6Q14393 721 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 NOM1Q5C9Z4 860 aaKnown RBP6.51□□□□□ -1.37
CSMD3-205ENST00000462254 EFHC2Q5JST6 749 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 C1orf53Q5VUE5 145 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 PHLDB3Q6NSJ2 640 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 LRRC69Q6ZNQ3 347 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 ZNF280CQ8ND82 737 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 GMCL1Q96IK5 515 aa6.51□□□□□ -1.37
CSMD3-205ENST00000462254 COL25A1Q9BXS0 654 aaPredicted RBP6.51□□□□□ -1.37
CSMD3-205ENST00000462254 ZCCHC2Q9C0B9 1178 aaKnown RBP6.51□□□□□ -1.37
CSMD3-205ENST00000462254 QTRT2Q9H974 415 aaKnown RBP6.51□□□□□ -1.37
CSMD3-205ENST00000462254 HCN2Q9UL51 889 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms