RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 FOXD4L4Q8WXT5 416 aaPredicted RBP16.66■□□□□ 0.26
PTPRN-210ENST00000460801 CCDC87Q9NVE4 849 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 RIPOR2Q9Y4F9 1068 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 U3KPZ7 1027 aaPredicted RBP16.66■□□□□ 0.26
PTPRN-210ENST00000460801 WDR33Q9C0J8 1336 aaKnown RBP16.66■□□□□ 0.26
PTPRN-210ENST00000460801 CICQ96RK0 1608 aaPredicted RBP16.66■□□□□ 0.26
PTPRN-210ENST00000460801 ITGA6P23229 1130 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 PIP4K2BP78356 416 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 COL9A3Q14050 684 aaPredicted RBP16.66■□□□□ 0.26
PTPRN-210ENST00000460801 ZMYM1Q5SVZ6 1142 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 BLOC1S2Q6QNY1 142 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 UBN2Q6ZU65 1347 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 XAGE2Q96GT9 111 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 GREM2Q9H772 168 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 RREB1Q92766 1687 aa16.66■□□□□ 0.26
PTPRN-210ENST00000460801 LOC102724428A0A0B4J2F2 783 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 PDE8AO60658 829 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 PRPF40AO75400 957 aaKnown RBP16.65■□□□□ 0.26
PTPRN-210ENST00000460801 XRCC6P12956 609 aaKnown RBP eCLIP16.65■□□□□ 0.26
PTPRN-210ENST00000460801 RPS6KB1P23443 525 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 ATP6V1AP38606 617 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 SIK1P57059 783 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 KRT32Q14532 448 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 CCDC158Q5M9N0 1113 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 RIC1Q4ADV7 1423 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 ADORA1P30542 326 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 CRKLP46109 303 aaKnown RBP16.65■□□□□ 0.26
PTPRN-210ENST00000460801 CHAMP1Q96JM3 812 aa16.65■□□□□ 0.26
PTPRN-210ENST00000460801 ANKRD18BA2A2Z9 1011 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 ANKRD1Q15327 319 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 ME3Q16798 604 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 LDHAL6AQ6ZMR3 332 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 TPCN1Q9ULQ1 816 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 SMC3Q9UQE7 1217 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 MRE11P49959 708 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 ST3GAL1Q11201 340 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 CCDC83Q8IWF9 413 aa16.64■□□□□ 0.25
PTPRN-210ENST00000460801 RNF113AO15541 343 aaKnown RBP16.63■□□□□ 0.25
PTPRN-210ENST00000460801 ITPK1Q13572 414 aa16.63■□□□□ 0.25
PTPRN-210ENST00000460801 TTC39AQ5SRH9 613 aa16.63■□□□□ 0.25
PTPRN-210ENST00000460801 GORABQ5T7V8 394 aa16.63■□□□□ 0.25
PTPRN-210ENST00000460801 AK7Q96M32 723 aa16.63■□□□□ 0.25
PTPRN-210ENST00000460801 DSCC1Q9BVC3 393 aa16.63■□□□□ 0.25
PTPRN-210ENST00000460801 MYH14Q7Z406 1995 aaKnown RBP16.63■□□□□ 0.25
PTPRN-210ENST00000460801 A0A0G2JS52 829 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 CYP21A2P08686 494 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 SLFNL1Q499Z3 407 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 METTL24Q5JXM2 366 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 GAS2L3Q86XJ1 694 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 ABCC12Q96J65 1359 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 SYT1P21579 422 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 TOB2Q14106 344 aaPredicted RBP16.62■□□□□ 0.25
PTPRN-210ENST00000460801 ATP2B3Q16720 1220 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 VGLL2Q8N8G2 317 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 GPT2Q8TD30 523 aa16.62■□□□□ 0.25
PTPRN-210ENST00000460801 STX6O43752 255 aa16.61■□□□□ 0.25
PTPRN-210ENST00000460801 ZSCAN22P10073 491 aaPredicted RBP16.61■□□□□ 0.25
PTPRN-210ENST00000460801 SMARCC1Q92922 1105 aaPredicted RBP16.61■□□□□ 0.25
PTPRN-210ENST00000460801 NEK1Q96PY6 1258 aa16.61■□□□□ 0.25
PTPRN-210ENST00000460801 GRPEL1Q9HAV7 217 aa16.61■□□□□ 0.25
PTPRN-210ENST00000460801 CAMTA2O94983 1202 aa16.61■□□□□ 0.25
PTPRN-210ENST00000460801 FKBP4Q02790 459 aaKnown RBP eCLIP16.61■□□□□ 0.25
PTPRN-210ENST00000460801 SUSD4Q5VX71 490 aa16.61■□□□□ 0.25
PTPRN-210ENST00000460801 TCEANC2Q96MN5 208 aa16.61■□□□□ 0.25
PTPRN-210ENST00000460801 MAST3O60307 1309 aa16.6■□□□□ 0.25
PTPRN-210ENST00000460801 GJB2P29033 226 aa16.6■□□□□ 0.25
PTPRN-210ENST00000460801 SCARF1Q14162 830 aa16.6■□□□□ 0.25
PTPRN-210ENST00000460801 LRRFIP1Q32MZ4 808 aaKnown RBP16.6■□□□□ 0.25
PTPRN-210ENST00000460801 ZNF512BQ96KM6 892 aaPredicted RBP16.6■□□□□ 0.25
PTPRN-210ENST00000460801 CNNM1Q9NRU3 951 aa16.6■□□□□ 0.25
PTPRN-210ENST00000460801 KCNQ2O43526 872 aa16.6■□□□□ 0.25
PTPRN-210ENST00000460801 CAVIN1Q6NZI2 390 aaKnown RBP16.6■□□□□ 0.25
PTPRN-210ENST00000460801 NECAB1Q8N987 351 aa16.6■□□□□ 0.25
PTPRN-210ENST00000460801 LRP5O75197 1615 aa16.59■□□□□ 0.25
PTPRN-210ENST00000460801 ZFYP08048 801 aaPredicted RBP16.59■□□□□ 0.25
PTPRN-210ENST00000460801 HSPD1P10809 573 aaKnown RBP16.59■□□□□ 0.25
PTPRN-210ENST00000460801 NCLP19338 710 aaKnown RBP16.59■□□□□ 0.25
PTPRN-210ENST00000460801 TCHHQ07283 1943 aa16.59■□□□□ 0.25
PTPRN-210ENST00000460801 AKAP11Q9UKA4 1901 aa16.59■□□□□ 0.25
PTPRN-210ENST00000460801 ZNF831Q5JPB2 1677 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 BCL9LQ86UU0 1499 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 PDE8BO95263 885 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 ZAP70P43403 619 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 ZNF445P59923 1031 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 VPS72Q15906 364 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 PARP10Q53GL7 1025 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 OSBP2Q969R2 916 aa16.58■□□□□ 0.25
PTPRN-210ENST00000460801 UTP14AQ9BVJ6 771 aaKnown RBP16.58■□□□□ 0.25
PTPRN-210ENST00000460801 MBD3O95983 291 aa16.58■□□□□ 0.24
PTPRN-210ENST00000460801 COL5A3P25940 1745 aaPredicted RBP16.57■□□□□ 0.24
PTPRN-210ENST00000460801 M0R2C6 588 aa16.57■□□□□ 0.24
PTPRN-210ENST00000460801 F13A1P00488 732 aa16.57■□□□□ 0.24
PTPRN-210ENST00000460801 FAM98CQ17RN3 349 aaKnown RBP16.57■□□□□ 0.24
PTPRN-210ENST00000460801 ZSCAN23Q3MJ62 389 aa16.57■□□□□ 0.24
PTPRN-210ENST00000460801 STOX1Q6ZVD7 989 aa16.57■□□□□ 0.24
PTPRN-210ENST00000460801 PANK2Q9BZ23 570 aa16.57■□□□□ 0.24
PTPRN-210ENST00000460801 HMGB1P09429 215 aaKnown RBP16.57■□□□□ 0.24
PTPRN-210ENST00000460801 PDIA4P13667 645 aaKnown RBP16.57■□□□□ 0.24
PTPRN-210ENST00000460801 HCLS1P14317 486 aaPredicted RBP16.57■□□□□ 0.24
PTPRN-210ENST00000460801 TMEM87AQ8NBN3 555 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms