RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 CBX1P83916 185 aa17.01■□□□□ 0.31
PTPRU-205ENST00000460170 PYM1Q9BRP8 204 aaKnown RBP17.01■□□□□ 0.31
PTPRU-205ENST00000460170 NUP88Q99567 741 aaPredicted RBP17.01■□□□□ 0.31
PTPRU-205ENST00000460170 SNX14Q9Y5W7 946 aa17.01■□□□□ 0.31
PTPRU-205ENST00000460170 ARHGEF10O15013 1369 aa17.01■□□□□ 0.31
PTPRU-205ENST00000460170 GOLGA6L10A6NI86 522 aa17.01■□□□□ 0.31
PTPRU-205ENST00000460170 PATL2C9JE40 543 aaKnown RBP17.01■□□□□ 0.31
PTPRU-205ENST00000460170 HMGB2P26583 209 aaKnown RBP17.01■□□□□ 0.31
PTPRU-205ENST00000460170 ESR2Q92731 530 aa17.01■□□□□ 0.31
PTPRU-205ENST00000460170 PAXBP1Q9Y5B6 917 aa17.01■□□□□ 0.31
PTPRU-205ENST00000460170 PTPDC1A2A3K4 754 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 CYP7A1P22680 504 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 RTN1Q16799 776 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 SLC4A4Q9Y6R1 1079 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 TMEM266Q2M3C6 531 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 CHST3Q7LGC8 479 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 SLF2Q8IX21 1173 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 CRACR2BQ8N4Y2 399 aaPredicted RBP17■□□□□ 0.31
PTPRU-205ENST00000460170 CCDC102AQ96A19 550 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 KDM5DQ9BY66 1539 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 MYOM2P54296 1465 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 CEP135Q66GS9 1140 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 METTL22Q9BUU2 404 aaPredicted RBP17■□□□□ 0.31
PTPRU-205ENST00000460170 GOLGA6L9A6NEM1 432 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 SPTLC2O15270 562 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 KAT14Q9H8E8 782 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 YEATS4O95619 227 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 SKILP12757 684 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 UBA7P41226 1012 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 TCP11L1Q9NUJ3 509 aa17■□□□□ 0.31
PTPRU-205ENST00000460170 BAG3O95817 575 aa16.99■□□□□ 0.31
PTPRU-205ENST00000460170 SPTY2D1Q68D10 685 aaPredicted RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 RPGRQ92834 1020 aaKnown RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 CCDC12Q8WUD4 166 aaPredicted RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 CRNKL1Q9BZJ0 848 aaKnown RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 MARCKSP29966 332 aaPredicted RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 RDXP35241 583 aaKnown RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 UBASH3AP57075 661 aa16.99■□□□□ 0.31
PTPRU-205ENST00000460170 TSG101Q99816 390 aa16.99■□□□□ 0.31
PTPRU-205ENST00000460170 FGFR1OPO95684 399 aaKnown RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 GSPT1P15170 499 aaKnown RBP16.99■□□□□ 0.31
PTPRU-205ENST00000460170 TTC37Q6PGP7 1564 aa16.99■□□□□ 0.31
PTPRU-205ENST00000460170 BMP15O95972 392 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 ANKRD18AQ8IVF6 992 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 AOPEPQ8N6M6 819 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 TAF4BQ92750 862 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 TMOD2Q9NZR1 351 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 RPS6KB1P23443 525 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 PKNOX2Q96KN3 472 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 RBSNQ9H1K0 784 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 IQSEC3Q9UPP2 1182 aaPredicted RBP16.98■□□□□ 0.31
PTPRU-205ENST00000460170 RTL1A6NKG5 1358 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 TMEM2Q9UHN6 1383 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 SLC27A2O14975 620 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 CACNA2D4Q7Z3S7 1137 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 HELLSQ9NRZ9 838 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 PLA2R1Q13018 1463 aa16.98■□□□□ 0.31
PTPRU-205ENST00000460170 TNNI3KQ59H18 835 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 NGLY1Q96IV0 654 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 FPGT-TNNI3KV9GXZ4 949 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 EIF4A1P60842 406 aaKnown RBP16.97■□□□□ 0.31
PTPRU-205ENST00000460170 CCDC96Q2M329 555 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 NBPF6Q5VWK0 638 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 PLBD2Q8NHP8 589 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 KLHDC4Q8TBB5 520 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 NBPF4Q96M43 638 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 FAM193AP78312 1265 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 PRDM15P57071 1507 aaPredicted RBP16.97■□□□□ 0.31
PTPRU-205ENST00000460170 TIMM10P62072 90 aa16.97■□□□□ 0.31
PTPRU-205ENST00000460170 DBNDD2Q9BQY9 259 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 TMEM132AQ24JP5 1023 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 IFIT1BQ5T764 474 aaKnown RBP16.96■□□□□ 0.31
PTPRU-205ENST00000460170 PRM3Q9NNZ6 103 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 SEPT11Q9NVA2 429 aaKnown RBP16.96■□□□□ 0.31
PTPRU-205ENST00000460170 EYA2O00167 538 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 IRS4O14654 1257 aaPredicted RBP16.96■□□□□ 0.31
PTPRU-205ENST00000460170 PPP1R12BO60237 982 aaPredicted RBP16.96■□□□□ 0.31
PTPRU-205ENST00000460170 AMPD3Q01432 767 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 JAKMIP3Q5VZ66 844 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 FAM227BQ96M60 508 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 HSPA4P34932 840 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 ZNF445P59923 1031 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 SUCLG2Q96I99 432 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 CRACR2AQ9BSW2 395 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 TSPYL1Q9H0U9 437 aa16.96■□□□□ 0.31
PTPRU-205ENST00000460170 PRKCSHP14314 528 aaPredicted RBP16.95■□□□□ 0.3
PTPRU-205ENST00000460170 MTIF2P46199 727 aaKnown RBP16.95■□□□□ 0.3
PTPRU-205ENST00000460170 DZIP3Q86Y13 1208 aaKnown RBP16.95■□□□□ 0.3
PTPRU-205ENST00000460170 ORAI2Q96SN7 254 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 USP44Q9H0E7 712 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 PCDH11XQ9BZA7 1347 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 PCDH11YQ9BZA8 1340 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 UGGT1Q9NYU2 1555 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 C6orf229H3BNL8 230 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 ATP6V1AP38606 617 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 BRAPQ7Z569 592 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 CALML4Q96GE6 196 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 ATL3Q6DD88 541 aa16.95■□□□□ 0.3
PTPRU-205ENST00000460170 NBPF5PQ86XG9 351 aaPredicted RBP16.95■□□□□ 0.3
PTPRU-205ENST00000460170 N4BP3O15049 544 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms