RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 NSFL1CQ9UNZ2 370 aaKnown RBP27.35■■□□□ 1.97
SSNA1-202ENST00000459860 JDP2Q8WYK2 163 aa27.34■■□□□ 1.97
SSNA1-202ENST00000459860 ZNF541Q9H0D2 1346 aa27.34■■□□□ 1.97
SSNA1-202ENST00000459860 LTBP1Q14766 1721 aa27.33■■□□□ 1.97
SSNA1-202ENST00000459860 CCDC57Q2TAC2 916 aa27.33■■□□□ 1.97
SSNA1-202ENST00000459860 LARGE2Q8N3Y3 721 aa27.33■■□□□ 1.97
SSNA1-202ENST00000459860 MPHOSPH8Q99549 860 aa27.33■■□□□ 1.97
SSNA1-202ENST00000459860 RTFDC1Q9BY42 306 aaPredicted RBP27.33■■□□□ 1.97
SSNA1-202ENST00000459860 USP44Q9H0E7 712 aa27.33■■□□□ 1.97
SSNA1-202ENST00000459860 VPS33BQ9H267 617 aa27.33■■□□□ 1.97
SSNA1-202ENST00000459860 TAF1DQ9H5J8 278 aaPredicted RBP27.33■■□□□ 1.97
SSNA1-202ENST00000459860 HDAC5Q9UQL6 1122 aa27.33■■□□□ 1.97
SSNA1-202ENST00000459860 DUOX1Q9NRD9 1551 aa27.32■■□□□ 1.96
SSNA1-202ENST00000459860 IQCA1LA6NCM1 817 aa27.32■■□□□ 1.96
SSNA1-202ENST00000459860 PPIP5K2O43314 1243 aa27.32■■□□□ 1.96
SSNA1-202ENST00000459860 TAF7LQ5H9L4 462 aa27.32■■□□□ 1.96
SSNA1-202ENST00000459860 EPHA10Q5JZY3 1008 aa27.32■■□□□ 1.96
SSNA1-202ENST00000459860 BSDC1Q9NW68 430 aaPredicted RBP27.32■■□□□ 1.96
SSNA1-202ENST00000459860 ANKIB1Q9P2G1 1089 aa27.32■■□□□ 1.96
SSNA1-202ENST00000459860 UBTFL1P0CB47 393 aaPredicted RBP27.31■■□□□ 1.96
SSNA1-202ENST00000459860 GPSM2P81274 684 aa27.31■■□□□ 1.96
SSNA1-202ENST00000459860 INTS3Q68E01 1043 aaKnown RBP27.31■■□□□ 1.96
SSNA1-202ENST00000459860 FTSJ3Q8IY81 847 aaKnown RBP27.31■■□□□ 1.96
SSNA1-202ENST00000459860 CLUAP1Q96AJ1 413 aa27.31■■□□□ 1.96
SSNA1-202ENST00000459860 CREBZFQ9NS37 354 aa27.31■■□□□ 1.96
SSNA1-202ENST00000459860 C6orf229H3BNL8 230 aa27.3■■□□□ 1.96
SSNA1-202ENST00000459860 HSPA1AP0DMV8 641 aaKnown RBP27.3■■□□□ 1.96
SSNA1-202ENST00000459860 HSPA1BP0DMV9 641 aaKnown RBP27.3■■□□□ 1.96
SSNA1-202ENST00000459860 EYA3Q99504 573 aa27.3■■□□□ 1.96
SSNA1-202ENST00000459860 BICC1Q9H694 974 aaKnown RBP27.3■■□□□ 1.96
SSNA1-202ENST00000459860 PASKQ96RG2 1323 aa27.3■■□□□ 1.96
SSNA1-202ENST00000459860 FZD9O00144 591 aa27.29■■□□□ 1.96
SSNA1-202ENST00000459860 AOC3Q16853 763 aa27.29■■□□□ 1.96
SSNA1-202ENST00000459860 LDHDQ86WU2 507 aa27.29■■□□□ 1.96
SSNA1-202ENST00000459860 NIM1KQ8IY84 436 aa27.29■■□□□ 1.96
SSNA1-202ENST00000459860 RCAN3Q9UKA8 241 aa27.29■■□□□ 1.96
SSNA1-202ENST00000459860 XDHP47989 1333 aa27.29■■□□□ 1.96
SSNA1-202ENST00000459860 PODXL2Q9NZ53 605 aa27.28■■□□□ 1.96
SSNA1-202ENST00000459860 GGA1Q9UJY5 639 aa27.28■■□□□ 1.96
SSNA1-202ENST00000459860 UFL1O94874 794 aa27.27■■□□□ 1.96
SSNA1-202ENST00000459860 KAZALD1Q96I82 304 aa27.27■■□□□ 1.96
SSNA1-202ENST00000459860 ITGBL1O95965 494 aaPredicted RBP27.26■■□□□ 1.95
SSNA1-202ENST00000459860 GNAI3P08754 354 aa27.26■■□□□ 1.95
SSNA1-202ENST00000459860 KIAA2012Q0VF49 1180 aa27.26■■□□□ 1.95
SSNA1-202ENST00000459860 WASHC4Q2M389 1173 aa27.26■■□□□ 1.95
SSNA1-202ENST00000459860 RABL6Q3YEC7 729 aaPredicted RBP27.26■■□□□ 1.95
SSNA1-202ENST00000459860 TBC1D16Q8TBP0 767 aa27.26■■□□□ 1.95
SSNA1-202ENST00000459860 MINPP1Q9UNW1 487 aa27.26■■□□□ 1.95
SSNA1-202ENST00000459860 TNNQ9UQP3 1299 aa27.26■■□□□ 1.95
SSNA1-202ENST00000459860 EIF6P56537 245 aaKnown RBP27.25■■□□□ 1.95
SSNA1-202ENST00000459860 DZIP1LQ8IYY4 767 aaKnown RBP27.25■■□□□ 1.95
SSNA1-202ENST00000459860 ANKRD2Q9GZV1 360 aa27.25■■□□□ 1.95
SSNA1-202ENST00000459860 A0A1B0GUL6 1792 aa27.25■■□□□ 1.95
SSNA1-202ENST00000459860 COL4A5P29400 1685 aa27.24■■□□□ 1.95
SSNA1-202ENST00000459860 MS4A1P11836 297 aa27.24■■□□□ 1.95
SSNA1-202ENST00000459860 ATP2B4P23634 1241 aa27.24■■□□□ 1.95
SSNA1-202ENST00000459860 ANKRD44Q8N8A2 993 aa27.24■■□□□ 1.95
SSNA1-202ENST00000459860 POLLQ9UGP5 575 aa27.24■■□□□ 1.95
SSNA1-202ENST00000459860 MKRN1Q9UHC7 482 aaKnown RBP27.24■■□□□ 1.95
SSNA1-202ENST00000459860 HACL1Q9UJ83 578 aa27.24■■□□□ 1.95
SSNA1-202ENST00000459860 TMEM57Q8N5G2 664 aa27.23■■□□□ 1.95
SSNA1-202ENST00000459860 MEIS3Q99687 375 aa27.23■■□□□ 1.95
SSNA1-202ENST00000459860 ZC3H12CQ9C0D7 883 aaKnown RBP27.23■■□□□ 1.95
SSNA1-202ENST00000459860 CNNM1Q9NRU3 951 aa27.23■■□□□ 1.95
SSNA1-202ENST00000459860 LDHAL6AQ6ZMR3 332 aa27.22■■□□□ 1.95
SSNA1-202ENST00000459860 G3V3G9 751 aa27.21■■□□□ 1.95
SSNA1-202ENST00000459860 RIMBP2O15034 1052 aa27.21■■□□□ 1.95
SSNA1-202ENST00000459860 EPHX2P34913 555 aa27.21■■□□□ 1.95
SSNA1-202ENST00000459860 DCAF8Q5TAQ9 597 aa27.21■■□□□ 1.95
SSNA1-202ENST00000459860 TNS4Q8IZW8 715 aa27.21■■□□□ 1.95
SSNA1-202ENST00000459860 ZNF594Q96JF6 807 aaPredicted RBP27.21■■□□□ 1.95
SSNA1-202ENST00000459860 ZNRF3Q9ULT6 936 aa27.21■■□□□ 1.95
SSNA1-202ENST00000459860 CNTNAP1P78357 1384 aa27.21■■□□□ 1.95
SSNA1-202ENST00000459860 EAPPQ56P03 285 aaPredicted RBP27.2■■□□□ 1.94
SSNA1-202ENST00000459860 ITPRIPQ8IWB1 547 aa27.2■■□□□ 1.94
SSNA1-202ENST00000459860 GPC2Q8N158 579 aa27.2■■□□□ 1.94
SSNA1-202ENST00000459860 LRRFIP2Q9Y608 721 aaKnown RBP27.2■■□□□ 1.94
SSNA1-202ENST00000459860 KCNJ4P48050 445 aa27.19■■□□□ 1.94
SSNA1-202ENST00000459860 CHRNDQ07001 517 aa27.19■■□□□ 1.94
SSNA1-202ENST00000459860 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.19■■□□□ 1.94
SSNA1-202ENST00000459860 LEMD3Q9Y2U8 911 aa27.19■■□□□ 1.94
SSNA1-202ENST00000459860 GPR101Q96P66 508 aaPredicted RBP27.18■■□□□ 1.94
SSNA1-202ENST00000459860 SCN4AP35499 1836 aa27.18■■□□□ 1.94
SSNA1-202ENST00000459860 PNMA8AQ86V59 439 aaPredicted RBP27.17■■□□□ 1.94
SSNA1-202ENST00000459860 GJA3Q9Y6H8 435 aa27.17■■□□□ 1.94
SSNA1-202ENST00000459860 MED23Q9ULK4 1368 aa27.17■■□□□ 1.94
SSNA1-202ENST00000459860 TMEM88BA6NKF7 163 aa27.16■■□□□ 1.94
SSNA1-202ENST00000459860 GNAI2P04899 355 aa27.16■■□□□ 1.94
SSNA1-202ENST00000459860 ADAMTSL1Q8N6G6 1762 aa27.16■■□□□ 1.94
SSNA1-202ENST00000459860 ZNF804BA4D1E1 1349 aa27.16■■□□□ 1.94
SSNA1-202ENST00000459860 MAP1SQ66K74 1059 aaPredicted RBP27.15■■□□□ 1.94
SSNA1-202ENST00000459860 DBNDD1Q9H9R9 158 aa27.15■■□□□ 1.94
SSNA1-202ENST00000459860 CLEC11AQ9Y240 323 aa27.15■■□□□ 1.94
SSNA1-202ENST00000459860 ECE2O60344 883 aa27.14■■□□□ 1.94
SSNA1-202ENST00000459860 RLBP1P12271 317 aa27.14■■□□□ 1.94
SSNA1-202ENST00000459860 CNTROBQ8N137 903 aa27.14■■□□□ 1.94
SSNA1-202ENST00000459860 MROH5Q6ZUA9 1318 aa27.14■■□□□ 1.93
SSNA1-202ENST00000459860 VEGFBP49765 207 aa27.13■■□□□ 1.93
SSNA1-202ENST00000459860 TNIP1Q15025 636 aa27.13■■□□□ 1.93
SSNA1-202ENST00000459860 DOK7Q18PE1 504 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms