RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PBXIP1Q96AQ6 731 aa14□□□□□ -0.17
SYNE2-207ENST00000458046 KIAA1211Q6ZU35 1233 aa14□□□□□ -0.17
SYNE2-207ENST00000458046 LSG1Q9H089 658 aaKnown RBP14□□□□□ -0.17
SYNE2-207ENST00000458046 LRRC37A3O60309 1634 aa13.99□□□□□ -0.17
SYNE2-207ENST00000458046 MLLT3P42568 568 aaPredicted RBP13.99□□□□□ -0.17
SYNE2-207ENST00000458046 AK2P54819 239 aa13.99□□□□□ -0.17
SYNE2-207ENST00000458046 TAGLNQ01995 201 aaKnown RBP13.99□□□□□ -0.17
SYNE2-207ENST00000458046 ZNF530Q6P9A1 599 aaPredicted RBP13.99□□□□□ -0.17
SYNE2-207ENST00000458046 RAD50Q92878 1312 aa13.99□□□□□ -0.17
SYNE2-207ENST00000458046 CEMIPQ8WUJ3 1361 aa13.99□□□□□ -0.17
SYNE2-207ENST00000458046 CFAP69A5D8W1 941 aa13.99□□□□□ -0.17
SYNE2-207ENST00000458046 EIF3JO75822 258 aaKnown RBP13.99□□□□□ -0.17
SYNE2-207ENST00000458046 BAG6P46379 1132 aa13.99□□□□□ -0.17
SYNE2-207ENST00000458046 PA2G4Q9UQ80 394 aaKnown RBP13.99□□□□□ -0.17
SYNE2-207ENST00000458046 WDR33Q9C0J8 1336 aaKnown RBP13.99□□□□□ -0.17
SYNE2-207ENST00000458046 KAT6BQ8WYB5 2073 aa13.99□□□□□ -0.17
SYNE2-207ENST00000458046 SEMA3FQ13275 785 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 ESCO1Q5FWF5 840 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 IL17RAQ96F46 866 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.98□□□□□ -0.17
SYNE2-207ENST00000458046 PXDNLA1KZ92 1463 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 DDX54Q8TDD1 881 aaKnown RBP13.98□□□□□ -0.17
SYNE2-207ENST00000458046 CALR3Q96L12 384 aaKnown RBP13.98□□□□□ -0.17
SYNE2-207ENST00000458046 PIF1Q9H611 641 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 C9orf78Q9NZ63 289 aaPredicted RBP13.98□□□□□ -0.17
SYNE2-207ENST00000458046 NOL7Q9UMY1 257 aaKnown RBP13.98□□□□□ -0.17
SYNE2-207ENST00000458046 G3BP2Q9UN86 482 aaKnown RBP13.98□□□□□ -0.17
SYNE2-207ENST00000458046 ANKARQ7Z5J8 1434 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 PRAMEF22A3QJZ6 481 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 PROSER3Q2NL68 480 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 RUFY3Q7L099 469 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 TSPY26PQ9H489 355 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 MAP3K2Q9Y2U5 619 aa13.98□□□□□ -0.17
SYNE2-207ENST00000458046 OFD1O75665 1012 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 LIG1P18858 919 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 XPCQ01831 940 aaPredicted RBP13.97□□□□□ -0.17
SYNE2-207ENST00000458046 CWF19L2Q2TBE0 894 aaKnown RBP13.97□□□□□ -0.17
SYNE2-207ENST00000458046 TTC14Q96N46 770 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 DIAPH3Q9NSV4 1193 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 CNPY2Q9Y2B0 182 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 COMMD10Q9Y6G5 202 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 ADCY9O60503 1353 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 STK10O94804 968 aaKnown RBP13.97□□□□□ -0.17
SYNE2-207ENST00000458046 HSPA6P17066 643 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 CASTP20810 708 aaKnown RBP13.97□□□□□ -0.17
SYNE2-207ENST00000458046 SCP2P22307 547 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 PTH1RQ03431 593 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 HSP90AA2PQ14568 343 aaPredicted RBP13.97□□□□□ -0.17
SYNE2-207ENST00000458046 HS1BP3Q53T59 392 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 CLASRPQ8N2M8 674 aaKnown RBP13.97□□□□□ -0.17
SYNE2-207ENST00000458046 GLMNQ92990 594 aa13.97□□□□□ -0.17
SYNE2-207ENST00000458046 TUBGCP6Q96RT7 1819 aa13.96□□□□□ -0.17
SYNE2-207ENST00000458046 GLRX3O76003 335 aaKnown RBP13.96□□□□□ -0.17
SYNE2-207ENST00000458046 SYAP1Q96A49 352 aaPredicted RBP13.96□□□□□ -0.17
SYNE2-207ENST00000458046 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.96□□□□□ -0.17
SYNE2-207ENST00000458046 LIMCH1Q9UPQ0 1083 aa13.96□□□□□ -0.17
SYNE2-207ENST00000458046 TMA7Q9Y2S6 64 aaKnown RBP13.96□□□□□ -0.17
SYNE2-207ENST00000458046 TLDC2A0PJX2 215 aa13.96□□□□□ -0.18
SYNE2-207ENST00000458046 LARGE1O95461 756 aa13.96□□□□□ -0.18
SYNE2-207ENST00000458046 AKAP4Q5JQC9 854 aa13.96□□□□□ -0.18
SYNE2-207ENST00000458046 AMOTL1Q8IY63 956 aa13.96□□□□□ -0.18
SYNE2-207ENST00000458046 DBF4Q9UBU7 674 aaPredicted RBP13.96□□□□□ -0.18
SYNE2-207ENST00000458046 RPAP1Q9BWH6 1393 aaPredicted RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 HMGB1P1B2RPK0 211 aaPredicted RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 HOXB7P09629 217 aa13.95□□□□□ -0.18
SYNE2-207ENST00000458046 SYT1P21579 422 aa13.95□□□□□ -0.18
SYNE2-207ENST00000458046 ADCK5Q3MIX3 580 aa13.95□□□□□ -0.18
SYNE2-207ENST00000458046 PLEKHO1Q53GL0 409 aaPredicted RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 PRPF40BQ6NWY9 871 aaKnown RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 FBXO9Q9UK97 447 aaPredicted RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 IFIT2P09913 472 aaKnown RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 ZSCAN22P10073 491 aaPredicted RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 AIMP1Q12904 312 aaKnown RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 TCEAL1Q15170 157 aa13.95□□□□□ -0.18
SYNE2-207ENST00000458046 NBPF20Q3BBV1 942 aa13.95□□□□□ -0.18
SYNE2-207ENST00000458046 SMC3Q9UQE7 1217 aa13.95□□□□□ -0.18
SYNE2-207ENST00000458046 R3HCC1Q9Y3T6 440 aaKnown RBP13.95□□□□□ -0.18
SYNE2-207ENST00000458046 STX6O43752 255 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 C1orf141Q5JVX7 400 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 CCDC83Q8IWF9 413 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 JAKMIP1Q96N16 626 aaKnown RBP13.94□□□□□ -0.18
SYNE2-207ENST00000458046 ECHDC1Q9NTX5 307 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 RNMTO43148 476 aaKnown RBP13.94□□□□□ -0.18
SYNE2-207ENST00000458046 CSB-PGBD3P0DP91 1061 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 CSPP1Q1MSJ5 1256 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 SDE2Q6IQ49 451 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 TNS4Q8IZW8 715 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 ZNF830Q96NB3 372 aaPredicted RBP13.94□□□□□ -0.18
SYNE2-207ENST00000458046 ZKSCAN5Q9Y2L8 839 aa13.94□□□□□ -0.18
SYNE2-207ENST00000458046 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.94□□□□□ -0.18
SYNE2-207ENST00000458046 TTC41PQ6P2S7 1318 aa13.93□□□□□ -0.18
SYNE2-207ENST00000458046 IRF6O14896 467 aa13.93□□□□□ -0.18
SYNE2-207ENST00000458046 AACSQ86V21 672 aa13.93□□□□□ -0.18
SYNE2-207ENST00000458046 NPAS4Q8IUM7 802 aa13.93□□□□□ -0.18
SYNE2-207ENST00000458046 HELBQ8NG08 1087 aaPredicted RBP13.93□□□□□ -0.18
SYNE2-207ENST00000458046 HYPKQ9NX55 129 aa13.93□□□□□ -0.18
SYNE2-207ENST00000458046 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.93□□□□□ -0.18
SYNE2-207ENST00000458046 TMEM88BA6NKF7 163 aa13.93□□□□□ -0.18
SYNE2-207ENST00000458046 FIBPO43427 364 aa13.93□□□□□ -0.18
SYNE2-207ENST00000458046 TPM2P07951 284 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms