RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 ARID4BQ4LE39 1312 aaPredicted RBP7.57□□□□□ -1.2
VPS41-209ENST00000457055 RFX1P22670 979 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 CDCA8Q53HL2 280 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 FBXO11Q86XK2 927 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 RGS22Q8NE09 1264 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 USP35Q9P2H5 1018 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 LRFN2Q9ULH4 789 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 SMARCA2P51531 1590 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 KIF21AQ7Z4S6 1674 aa7.57□□□□□ -1.2
VPS41-209ENST00000457055 BAZ1AQ9NRL2 1556 aaPredicted RBP7.56□□□□□ -1.2
VPS41-209ENST00000457055 OPLAHO14841 1288 aa7.56□□□□□ -1.2
VPS41-209ENST00000457055 EIF2AK2P19525 551 aaKnown RBP7.56□□□□□ -1.2
VPS41-209ENST00000457055 NRLP54845 237 aa7.56□□□□□ -1.2
VPS41-209ENST00000457055 HFE2Q6ZVN8 426 aa7.56□□□□□ -1.2
VPS41-209ENST00000457055 TREML1Q86YW5 311 aa7.56□□□□□ -1.2
VPS41-209ENST00000457055 RGL4Q8IZJ4 473 aa7.56□□□□□ -1.2
VPS41-209ENST00000457055 SMG9Q9H0W8 520 aaKnown RBP7.56□□□□□ -1.2
VPS41-209ENST00000457055 ZNF777Q9ULD5 760 aaPredicted RBP7.56□□□□□ -1.2
VPS41-209ENST00000457055 NOVA2Q9UNW9 492 aaKnown RBP7.56□□□□□ -1.2
VPS41-209ENST00000457055 CLSPNQ9HAW4 1339 aa7.55□□□□□ -1.2
VPS41-209ENST00000457055 XYLBO75191 536 aa7.55□□□□□ -1.2
VPS41-209ENST00000457055 FKBP5Q13451 457 aaPredicted RBP7.55□□□□□ -1.2
VPS41-209ENST00000457055 CMTR1Q8N1G2 835 aaKnown RBP7.55□□□□□ -1.2
VPS41-209ENST00000457055 TTC9Q92623 222 aa7.55□□□□□ -1.2
VPS41-209ENST00000457055 C1orf115Q9H7X2 142 aa7.55□□□□□ -1.2
VPS41-209ENST00000457055 ZFP64Q9NPA5 681 aa7.55□□□□□ -1.2
VPS41-209ENST00000457055 TLR7Q9NYK1 1049 aaKnown RBP7.55□□□□□ -1.2
VPS41-209ENST00000457055 MTMR7Q9Y216 660 aa7.55□□□□□ -1.2
VPS41-209ENST00000457055 EGFRP00533 1210 aa7.54□□□□□ -1.2
VPS41-209ENST00000457055 ARTNQ5T4W7 220 aa7.54□□□□□ -1.2
VPS41-209ENST00000457055 WFDC12Q8WWY7 111 aa7.54□□□□□ -1.2
VPS41-209ENST00000457055 PRIMPOLQ96LW4 560 aa7.54□□□□□ -1.2
VPS41-209ENST00000457055 SSBP4Q9BWG4 385 aaPredicted RBP7.54□□□□□ -1.2
VPS41-209ENST00000457055 KRTAP4-8Q9BYQ9 185 aa7.54□□□□□ -1.2
VPS41-209ENST00000457055 BRPF3Q9ULD4 1205 aa7.54□□□□□ -1.2
VPS41-209ENST00000457055 A0A0U1RQG5 324 aaPredicted RBP7.53□□□□□ -1.2
VPS41-209ENST00000457055 PRMT3O60678 531 aa7.53□□□□□ -1.2
VPS41-209ENST00000457055 PSAPP07602 524 aa7.53□□□□□ -1.2
VPS41-209ENST00000457055 NCLP19338 710 aaKnown RBP7.53□□□□□ -1.2
VPS41-209ENST00000457055 IREB2P48200 963 aaKnown RBP7.53□□□□□ -1.2
VPS41-209ENST00000457055 AAMPQ13685 434 aa7.53□□□□□ -1.2
VPS41-209ENST00000457055 SWI5Q1ZZU3 235 aa7.53□□□□□ -1.2
VPS41-209ENST00000457055 COX20Q5RI15 118 aa7.53□□□□□ -1.2
VPS41-209ENST00000457055 CYB5RLQ6IPT4 315 aa7.53□□□□□ -1.2
VPS41-209ENST00000457055 CERS3Q8IU89 383 aa7.53□□□□□ -1.2
VPS41-209ENST00000457055 NOS3P29474 1203 aa7.52□□□□□ -1.21
VPS41-209ENST00000457055 IGF2-ASQ6U949 168 aa7.52□□□□□ -1.21
VPS41-209ENST00000457055 FAM177A1Q8N128 213 aaPredicted RBP7.52□□□□□ -1.21
VPS41-209ENST00000457055 PLD4Q96BZ4 506 aa7.52□□□□□ -1.21
VPS41-209ENST00000457055 NSUN5Q96P11 429 aaKnown RBP7.52□□□□□ -1.21
VPS41-209ENST00000457055 PSMG3-AS1Q96PY0 264 aa7.52□□□□□ -1.21
VPS41-209ENST00000457055 KCNMB2Q9Y691 235 aa7.52□□□□□ -1.21
VPS41-209ENST00000457055 ACIN1Q9UKV3 1341 aaKnown RBP7.52□□□□□ -1.21
VPS41-209ENST00000457055 J3QW42 95 aa7.51□□□□□ -1.21
VPS41-209ENST00000457055 PPM1GO15355 546 aaPredicted RBP7.51□□□□□ -1.21
VPS41-209ENST00000457055 DEAF1O75398 565 aaPredicted RBP7.51□□□□□ -1.21
VPS41-209ENST00000457055 GHRHP01286 108 aa7.51□□□□□ -1.21
VPS41-209ENST00000457055 IRX6P78412 446 aaPredicted RBP7.51□□□□□ -1.21
VPS41-209ENST00000457055 CWC22Q9HCG8 908 aaKnown RBP7.51□□□□□ -1.21
VPS41-209ENST00000457055 LOC102724428A0A0B4J2F2 783 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 E9PSI1 815 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 MMP20O60882 483 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 SIK1P57059 783 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 LRP8Q14114 963 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 GDF6Q6KF10 455 aaPredicted RBP7.5□□□□□ -1.21
VPS41-209ENST00000457055 NBPF11Q86T75 865 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 ETFBKMTQ8IXQ9 262 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 ZNF428Q96B54 188 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 RBSNQ9H1K0 784 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 ZMIZ1Q9ULJ6 1067 aa7.5□□□□□ -1.21
VPS41-209ENST00000457055 DLL1O00548 723 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 HOXD8P13378 290 aaPredicted RBP7.49□□□□□ -1.21
VPS41-209ENST00000457055 SOX18P35713 384 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 OCLNQ16625 522 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 TMCO4Q5TGY1 634 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 C16orf46Q6P387 395 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 STK32AQ8WU08 396 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 FOXD4L4Q8WXT5 416 aaPredicted RBP7.49□□□□□ -1.21
VPS41-209ENST00000457055 MEGF10Q96KG7 1140 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 SAP130Q9H0E3 1048 aa7.49□□□□□ -1.21
VPS41-209ENST00000457055 PTMSP20962 102 aa7.48□□□□□ -1.21
VPS41-209ENST00000457055 SETQ01105 290 aaPredicted RBP7.48□□□□□ -1.21
VPS41-209ENST00000457055 ELOAQ14241 798 aaKnown RBP7.48□□□□□ -1.21
VPS41-209ENST00000457055 TRIP4Q15650 581 aaPredicted RBP7.48□□□□□ -1.21
VPS41-209ENST00000457055 MKNK1Q9BUB5 465 aa7.48□□□□□ -1.21
VPS41-209ENST00000457055 NCAPD3P42695 1498 aa7.48□□□□□ -1.21
VPS41-209ENST00000457055 NLRP13Q86W25 1043 aa7.47□□□□□ -1.21
VPS41-209ENST00000457055 IL22RA1Q8N6P7 574 aa7.47□□□□□ -1.21
VPS41-209ENST00000457055 AKTIPQ9H8T0 292 aa7.47□□□□□ -1.21
VPS41-209ENST00000457055 ARID3CA6NKF2 412 aa7.46□□□□□ -1.22
VPS41-209ENST00000457055 FAM69CQ0P6D2 419 aa7.46□□□□□ -1.22
VPS41-209ENST00000457055 ERICH6BQ5W0A0 696 aa7.46□□□□□ -1.22
VPS41-209ENST00000457055 COL26A1Q96A83 441 aa7.46□□□□□ -1.22
VPS41-209ENST00000457055 ANP32EQ9BTT0 268 aa7.46□□□□□ -1.22
VPS41-209ENST00000457055 MRPL18Q9H0U6 180 aaKnown RBP7.46□□□□□ -1.22
VPS41-209ENST00000457055 SRA1Q9HD15 236 aaKnown RBP7.46□□□□□ -1.22
VPS41-209ENST00000457055 TRIM33Q9UPN9 1127 aa7.46□□□□□ -1.22
VPS41-209ENST00000457055 UBAP1LF5GYI3 381 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 TNFRSF10BO14763 440 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 MFAP1P55081 439 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms