RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 FRAT1Q92837 279 aaPredicted RBP25.15■■□□□ 1.62
COL9A3-202ENST00000452372 USP44Q9H0E7 712 aa25.15■■□□□ 1.62
COL9A3-202ENST00000452372 GJA3Q9Y6H8 435 aa25.15■■□□□ 1.62
COL9A3-202ENST00000452372 SCNN1DP51172 638 aa25.14■■□□□ 1.62
COL9A3-202ENST00000452372 AOC3Q16853 763 aa25.14■■□□□ 1.62
COL9A3-202ENST00000452372 CDC5LQ99459 802 aaKnown RBP25.14■■□□□ 1.62
COL9A3-202ENST00000452372 VPS33BQ9H267 617 aa25.14■■□□□ 1.62
COL9A3-202ENST00000452372 TRIM27P14373 513 aa25.13■■□□□ 1.61
COL9A3-202ENST00000452372 EPS15P42566 896 aa25.13■■□□□ 1.61
COL9A3-202ENST00000452372 EPHA10Q5JZY3 1008 aa25.13■■□□□ 1.61
COL9A3-202ENST00000452372 PNMA8AQ86V59 439 aaPredicted RBP25.13■■□□□ 1.61
COL9A3-202ENST00000452372 ANKRD18AQ8IVF6 992 aa25.13■■□□□ 1.61
COL9A3-202ENST00000452372 MPNDQ8N594 471 aa25.13■■□□□ 1.61
COL9A3-202ENST00000452372 LRRC37AA6NMS7 1700 aa25.12■■□□□ 1.61
COL9A3-202ENST00000452372 PPIP5K2O43314 1243 aa25.12■■□□□ 1.61
COL9A3-202ENST00000452372 ZKSCAN2Q63HK3 967 aa25.12■■□□□ 1.61
COL9A3-202ENST00000452372 INTS3Q68E01 1043 aaKnown RBP25.12■■□□□ 1.61
COL9A3-202ENST00000452372 KAZALD1Q96I82 304 aa25.12■■□□□ 1.61
COL9A3-202ENST00000452372 CLEC11AQ9Y240 323 aa25.12■■□□□ 1.61
COL9A3-202ENST00000452372 ITGA6P23229 1130 aa25.11■■□□□ 1.61
COL9A3-202ENST00000452372 FAM161AQ3B820 660 aa25.11■■□□□ 1.61
COL9A3-202ENST00000452372 COL13A1Q5TAT6 717 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-202ENST00000452372 MAP1SQ66K74 1059 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-202ENST00000452372 LMBR1LQ6UX01 489 aa25.11■■□□□ 1.61
COL9A3-202ENST00000452372 DPP8Q6V1X1 898 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-202ENST00000452372 NIM1KQ8IY84 436 aa25.11■■□□□ 1.61
COL9A3-202ENST00000452372 SUCLG2Q96I99 432 aa25.11■■□□□ 1.61
COL9A3-202ENST00000452372 CXCL9Q07325 125 aa25.1■■□□□ 1.61
COL9A3-202ENST00000452372 CNTROBQ8N137 903 aa25.1■■□□□ 1.61
COL9A3-202ENST00000452372 MKRN1Q9UHC7 482 aaKnown RBP25.1■■□□□ 1.61
COL9A3-202ENST00000452372 SUPT20HQ8NEM7 779 aa25.09■■□□□ 1.61
COL9A3-202ENST00000452372 BSDC1Q9NW68 430 aaPredicted RBP25.09■■□□□ 1.61
COL9A3-202ENST00000452372 ZNRF3Q9ULT6 936 aa25.09■■□□□ 1.61
COL9A3-202ENST00000452372 NSFL1CQ9UNZ2 370 aaKnown RBP25.09■■□□□ 1.61
COL9A3-202ENST00000452372 TNNQ9UQP3 1299 aa25.09■■□□□ 1.61
COL9A3-202ENST00000452372 ANKRD18BA2A2Z9 1011 aa25.08■■□□□ 1.61
COL9A3-202ENST00000452372 KIAA2012Q0VF49 1180 aa25.08■■□□□ 1.61
COL9A3-202ENST00000452372 YTHDC1Q96MU7 727 aaKnown RBP25.08■■□□□ 1.61
COL9A3-202ENST00000452372 IGHMBP2P38935 993 aaKnown RBP25.07■■□□□ 1.6
COL9A3-202ENST00000452372 GPSM2P81274 684 aa25.07■■□□□ 1.6
COL9A3-202ENST00000452372 IFIT5Q13325 482 aaKnown RBP25.07■■□□□ 1.6
COL9A3-202ENST00000452372 CLUAP1Q96AJ1 413 aa25.07■■□□□ 1.6
COL9A3-202ENST00000452372 CHMP3Q9Y3E7 222 aa25.07■■□□□ 1.6
COL9A3-202ENST00000452372 DUOX1Q9NRD9 1551 aa25.06■■□□□ 1.6
COL9A3-202ENST00000452372 TMEM88BA6NKF7 163 aa25.06■■□□□ 1.6
COL9A3-202ENST00000452372 HSPA1AP0DMV8 641 aaKnown RBP25.06■■□□□ 1.6
COL9A3-202ENST00000452372 HSPA1BP0DMV9 641 aaKnown RBP25.06■■□□□ 1.6
COL9A3-202ENST00000452372 RABL6Q3YEC7 729 aaPredicted RBP25.06■■□□□ 1.6
COL9A3-202ENST00000452372 BICC1Q9H694 974 aaKnown RBP25.06■■□□□ 1.6
COL9A3-202ENST00000452372 PODXL2Q9NZ53 605 aa25.06■■□□□ 1.6
COL9A3-202ENST00000452372 RCAN3Q9UKA8 241 aa25.06■■□□□ 1.6
COL9A3-202ENST00000452372 CNTNAP1P78357 1384 aa25.05■■□□□ 1.6
COL9A3-202ENST00000452372 CCDC57Q2TAC2 916 aa25.05■■□□□ 1.6
COL9A3-202ENST00000452372 UBTFL1P0CB47 393 aaPredicted RBP25.04■■□□□ 1.6
COL9A3-202ENST00000452372 LMOD1P29536 600 aaPredicted RBP25.04■■□□□ 1.6
COL9A3-202ENST00000452372 FMR1Q06787 632 aaKnown RBP eCLIP25.04■■□□□ 1.6
COL9A3-202ENST00000452372 GPRC5DQ9NZD1 345 aa25.04■■□□□ 1.6
COL9A3-202ENST00000452372 MINPP1Q9UNW1 487 aa25.04■■□□□ 1.6
COL9A3-202ENST00000452372 SPEF2Q9C093 1822 aa25.04■■□□□ 1.6
COL9A3-202ENST00000452372 YDJCA8MPS7 323 aa25.03■■□□□ 1.6
COL9A3-202ENST00000452372 USP50Q70EL3 339 aaPredicted RBP25.03■■□□□ 1.6
COL9A3-202ENST00000452372 ANKRD44Q8N8A2 993 aa25.03■■□□□ 1.6
COL9A3-202ENST00000452372 MPHOSPH8Q99549 860 aa25.03■■□□□ 1.6
COL9A3-202ENST00000452372 ANKIB1Q9P2G1 1089 aa25.03■■□□□ 1.6
COL9A3-202ENST00000452372 POLLQ9UGP5 575 aa25.03■■□□□ 1.6
COL9A3-202ENST00000452372 HDAC5Q9UQL6 1122 aa25.03■■□□□ 1.6
COL9A3-202ENST00000452372 TBC1D16Q8TBP0 767 aa25.02■■□□□ 1.6
COL9A3-202ENST00000452372 MEIS3Q99687 375 aa25.02■■□□□ 1.6
COL9A3-202ENST00000452372 XDHP47989 1333 aa25.02■■□□□ 1.6
COL9A3-202ENST00000452372 C6orf229H3BNL8 230 aa25.01■■□□□ 1.59
COL9A3-202ENST00000452372 VEGFBP49765 207 aa25.01■■□□□ 1.59
COL9A3-202ENST00000452372 GMPSP49915 693 aaPredicted RBP25.01■■□□□ 1.59
COL9A3-202ENST00000452372 FTSJ3Q8IY81 847 aaKnown RBP25.01■■□□□ 1.59
COL9A3-202ENST00000452372 DZIP1LQ8IYY4 767 aaKnown RBP25.01■■□□□ 1.59
COL9A3-202ENST00000452372 TMEM57Q8N5G2 664 aa25.01■■□□□ 1.59
COL9A3-202ENST00000452372 RAD17O75943 681 aa25■■□□□ 1.59
COL9A3-202ENST00000452372 GNAI3P08754 354 aa25■■□□□ 1.59
COL9A3-202ENST00000452372 CIAPIN1Q6FI81 312 aa25■■□□□ 1.59
COL9A3-202ENST00000452372 ZNF594Q96JF6 807 aaPredicted RBP25■■□□□ 1.59
COL9A3-202ENST00000452372 GGA1Q9UJY5 639 aa25■■□□□ 1.59
COL9A3-202ENST00000452372 WASHC4Q2M389 1173 aa24.99■■□□□ 1.59
COL9A3-202ENST00000452372 TAF7LQ5H9L4 462 aa24.99■■□□□ 1.59
COL9A3-202ENST00000452372 EYA3Q99504 573 aa24.99■■□□□ 1.59
COL9A3-202ENST00000452372 ADARB2Q9NS39 739 aaKnown RBP24.99■■□□□ 1.59
COL9A3-202ENST00000452372 RASSF10A6NK89 507 aa24.98■■□□□ 1.59
COL9A3-202ENST00000452372 ATP2B4P23634 1241 aa24.98■■□□□ 1.59
COL9A3-202ENST00000452372 HIRAP54198 1017 aaPredicted RBP24.98■■□□□ 1.59
COL9A3-202ENST00000452372 LDHAL6AQ6ZMR3 332 aa24.98■■□□□ 1.59
COL9A3-202ENST00000452372 ANKRD2Q9GZV1 360 aa24.98■■□□□ 1.59
COL9A3-202ENST00000452372 PGAP2Q9UHJ9 254 aa24.98■■□□□ 1.59
COL9A3-202ENST00000452372 LRRFIP2Q9Y608 721 aaKnown RBP24.98■■□□□ 1.59
COL9A3-202ENST00000452372 UFL1O94874 794 aa24.97■■□□□ 1.59
COL9A3-202ENST00000452372 MS4A1P11836 297 aa24.97■■□□□ 1.59
COL9A3-202ENST00000452372 RLBP1P12271 317 aa24.97■■□□□ 1.59
COL9A3-202ENST00000452372 CST9Q5W186 159 aa24.97■■□□□ 1.59
COL9A3-202ENST00000452372 SHTN1A0MZ66 631 aa24.96■■□□□ 1.59
COL9A3-202ENST00000452372 TRAF5O00463 557 aa24.96■■□□□ 1.59
COL9A3-202ENST00000452372 TNIP1Q15025 636 aa24.96■■□□□ 1.59
COL9A3-202ENST00000452372 ZC3H12CQ9C0D7 883 aaKnown RBP24.96■■□□□ 1.59
COL9A3-202ENST00000452372 KCNQ5Q9NR82 932 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms