RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 ZNF646O15015 1829 aaPredicted RBP12.32□□□□□ -0.44
USP54-207ENST00000451492 E9PSI1 815 aa12.31□□□□□ -0.44
USP54-207ENST00000451492 H7C1W4 665 aa12.31□□□□□ -0.44
USP54-207ENST00000451492 PNMA8AQ86V59 439 aaPredicted RBP12.31□□□□□ -0.44
USP54-207ENST00000451492 CDC5LQ99459 802 aaKnown RBP12.31□□□□□ -0.44
USP54-207ENST00000451492 VPS33BQ9H267 617 aa12.31□□□□□ -0.44
USP54-207ENST00000451492 GGA1Q9UJY5 639 aa12.31□□□□□ -0.44
USP54-207ENST00000451492 ZBTB12Q9Y330 459 aaPredicted RBP12.31□□□□□ -0.44
USP54-207ENST00000451492 SHTN1A0MZ66 631 aa12.3□□□□□ -0.44
USP54-207ENST00000451492 CCER2I3L3R5 266 aa12.3□□□□□ -0.44
USP54-207ENST00000451492 ITGA6P23229 1130 aa12.3□□□□□ -0.44
USP54-207ENST00000451492 BEND3Q5T5X7 828 aa12.3□□□□□ -0.44
USP54-207ENST00000451492 DNAJC5GQ8N7S2 189 aa12.3□□□□□ -0.44
USP54-207ENST00000451492 KLRG1Q96E93 195 aa12.3□□□□□ -0.44
USP54-207ENST00000451492 ZC3H12CQ9C0D7 883 aaKnown RBP12.3□□□□□ -0.44
USP54-207ENST00000451492 GPRC5DQ9NZD1 345 aa12.3□□□□□ -0.44
USP54-207ENST00000451492 PCNTO95613 3336 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 POLR2AP24928 1970 aaKnown RBP12.29□□□□□ -0.44
USP54-207ENST00000451492 PSMD14O00487 310 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 IGHMBP2P38935 993 aaKnown RBP12.29□□□□□ -0.44
USP54-207ENST00000451492 CASP7P55210 303 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 TNIP1Q15025 636 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 FBXW7Q969H0 707 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 KCNQ5Q9NR82 932 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 MKRN1Q9UHC7 482 aaKnown RBP12.29□□□□□ -0.44
USP54-207ENST00000451492 XDHP47989 1333 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 RTL9Q8NET4 1388 aa12.29□□□□□ -0.44
USP54-207ENST00000451492 WTIPA6NIX2 430 aaPredicted RBP12.28□□□□□ -0.44
USP54-207ENST00000451492 FMR1Q06787 632 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP54-207ENST00000451492 SLFN5Q08AF3 891 aa12.28□□□□□ -0.44
USP54-207ENST00000451492 DIEXFQ68CQ4 756 aaKnown RBP12.28□□□□□ -0.44
USP54-207ENST00000451492 MICALL2Q8IY33 904 aa12.28□□□□□ -0.44
USP54-207ENST00000451492 CNTROBQ8N137 903 aa12.28□□□□□ -0.44
USP54-207ENST00000451492 MRPL50Q8N5N7 158 aaKnown RBP12.28□□□□□ -0.44
USP54-207ENST00000451492 MPHOSPH8Q99549 860 aa12.28□□□□□ -0.44
USP54-207ENST00000451492 SRCIN1Q9C0H9 1055 aa12.28□□□□□ -0.44
USP54-207ENST00000451492 ADARB2Q9NS39 739 aaKnown RBP12.28□□□□□ -0.44
USP54-207ENST00000451492 PODXL2Q9NZ53 605 aa12.28□□□□□ -0.44
USP54-207ENST00000451492 C9orf78Q9NZ63 289 aaPredicted RBP12.28□□□□□ -0.44
USP54-207ENST00000451492 PASKQ96RG2 1323 aa12.28□□□□□ -0.44
USP54-207ENST00000451492 USP50Q70EL3 339 aaPredicted RBP12.27□□□□□ -0.45
USP54-207ENST00000451492 TRPM4Q8TD43 1214 aa12.27□□□□□ -0.45
USP54-207ENST00000451492 SSH1Q8WYL5 1049 aa12.27□□□□□ -0.45
USP54-207ENST00000451492 CREBZFQ9NS37 354 aa12.27□□□□□ -0.45
USP54-207ENST00000451492 MINPP1Q9UNW1 487 aa12.27□□□□□ -0.45
USP54-207ENST00000451492 ANKRD18BA2A2Z9 1011 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 GRM8O00222 908 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 TRAF5O00463 557 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 ITGBL1O95965 494 aaPredicted RBP12.26□□□□□ -0.45
USP54-207ENST00000451492 ATP2B4P23634 1241 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 CCT4P50991 539 aaKnown RBP12.26□□□□□ -0.45
USP54-207ENST00000451492 TBC1D10BQ4KMP7 808 aaPredicted RBP12.26□□□□□ -0.45
USP54-207ENST00000451492 TAF7LQ5H9L4 462 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 EPHA10Q5JZY3 1008 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 RBM26Q5T8P6 1007 aaKnown RBP12.26□□□□□ -0.45
USP54-207ENST00000451492 MIER1Q8N108 512 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 PLA2G12BQ9BX93 195 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 SMC4Q9NTJ3 1288 aa12.26□□□□□ -0.45
USP54-207ENST00000451492 BSDC1Q9NW68 430 aaPredicted RBP12.26□□□□□ -0.45
USP54-207ENST00000451492 CNOT7Q9UIV1 285 aaKnown RBP12.26□□□□□ -0.45
USP54-207ENST00000451492 TMEM88BA6NKF7 163 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 KLRK1P26718 216 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 KCNJ4P48050 445 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 FOXO4P98177 505 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 IFIT5Q13325 482 aaKnown RBP12.25□□□□□ -0.45
USP54-207ENST00000451492 LMBR1LQ6UX01 489 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 SAMD7Q7Z3H4 446 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 SUCLG2Q96I99 432 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 ZNF594Q96JF6 807 aaPredicted RBP12.25□□□□□ -0.45
USP54-207ENST00000451492 ZNF408Q9H9D4 720 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 ABT1Q9ULW3 272 aaKnown RBP12.25□□□□□ -0.45
USP54-207ENST00000451492 MED23Q9ULK4 1368 aa12.25□□□□□ -0.45
USP54-207ENST00000451492 H7C1D1 291 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 SNAP23O00161 211 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 PLIN1O60240 522 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 ALDH1L1O75891 902 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 EGFRP00533 1210 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 CSF1RP07333 972 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 CHRNDQ07001 517 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 GRM1Q13255 1194 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 PAXIP1Q6ZW49 1069 aaPredicted RBP12.24□□□□□ -0.45
USP54-207ENST00000451492 HELBQ8NG08 1087 aaPredicted RBP12.24□□□□□ -0.45
USP54-207ENST00000451492 GLIS2Q9BZE0 524 aaPredicted RBP12.24□□□□□ -0.45
USP54-207ENST00000451492 MYH13Q9UKX3 1938 aa12.24□□□□□ -0.45
USP54-207ENST00000451492 CNTNAP1P78357 1384 aa12.23□□□□□ -0.45
USP54-207ENST00000451492 ZNF804BA4D1E1 1349 aa12.23□□□□□ -0.45
USP54-207ENST00000451492 PTPRCP08575 1304 aa12.23□□□□□ -0.45
USP54-207ENST00000451492 TAF5LO75529 589 aa12.23□□□□□ -0.45
USP54-207ENST00000451492 NBPF7P0C2Y1 421 aaPredicted RBP12.23□□□□□ -0.45
USP54-207ENST00000451492 HIRAP54198 1017 aaPredicted RBP12.23□□□□□ -0.45
USP54-207ENST00000451492 CCDC57Q2TAC2 916 aa12.23□□□□□ -0.45
USP54-207ENST00000451492 TXNRD3Q86VQ6 643 aa12.23□□□□□ -0.45
USP54-207ENST00000451492 KIF4BQ2VIQ3 1234 aa12.22□□□□□ -0.45
USP54-207ENST00000451492 DLK2Q6UY11 383 aa12.22□□□□□ -0.45
USP54-207ENST00000451492 MXD3Q9BW11 206 aa12.22□□□□□ -0.45
USP54-207ENST00000451492 ANKRD2Q9GZV1 360 aa12.22□□□□□ -0.45
USP54-207ENST00000451492 CNNM1Q9NRU3 951 aa12.22□□□□□ -0.45
USP54-207ENST00000451492 ECM29Q5VYK3 1845 aa12.22□□□□□ -0.45
USP54-207ENST00000451492 ARAP2Q8WZ64 1704 aa12.22□□□□□ -0.45
USP54-207ENST00000451492 VIL1P09327 827 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms