RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 PODXL2Q9NZ53 605 aa20.59■□□□□ 0.89
SF3A1-204ENST00000447376 ZNRF3Q9ULT6 936 aa20.59■□□□□ 0.89
SF3A1-204ENST00000447376 FOXO4P98177 505 aa20.58■□□□□ 0.89
SF3A1-204ENST00000447376 GJA3Q9Y6H8 435 aa20.58■□□□□ 0.89
SF3A1-204ENST00000447376 UTYO14607 1347 aa20.57■□□□□ 0.88
SF3A1-204ENST00000447376 ZNF541Q9H0D2 1346 aa20.57■□□□□ 0.88
SF3A1-204ENST00000447376 NBPF7P0C2Y1 421 aaPredicted RBP20.57■□□□□ 0.88
SF3A1-204ENST00000447376 ATP2B4P23634 1241 aa20.57■□□□□ 0.88
SF3A1-204ENST00000447376 TBC1D16Q8TBP0 767 aa20.57■□□□□ 0.88
SF3A1-204ENST00000447376 WDR90Q96KV7 1748 aa20.57■□□□□ 0.88
SF3A1-204ENST00000447376 ANKRD2Q9GZV1 360 aa20.57■□□□□ 0.88
SF3A1-204ENST00000447376 RIMBP2O15034 1052 aa20.56■□□□□ 0.88
SF3A1-204ENST00000447376 LMOD1P29536 600 aaPredicted RBP20.56■□□□□ 0.88
SF3A1-204ENST00000447376 TNIP1Q15025 636 aa20.56■□□□□ 0.88
SF3A1-204ENST00000447376 POLLQ9UGP5 575 aa20.56■□□□□ 0.88
SF3A1-204ENST00000447376 BCAR3O75815 825 aa20.55■□□□□ 0.88
SF3A1-204ENST00000447376 UBTFL1P0CB47 393 aaPredicted RBP20.55■□□□□ 0.88
SF3A1-204ENST00000447376 KCNJ4P48050 445 aa20.55■□□□□ 0.88
SF3A1-204ENST00000447376 ZKSCAN2Q63HK3 967 aa20.55■□□□□ 0.88
SF3A1-204ENST00000447376 RBM46Q8TBY0 533 aaKnown RBP20.55■□□□□ 0.88
SF3A1-204ENST00000447376 SUCLG2Q96I99 432 aa20.55■□□□□ 0.88
SF3A1-204ENST00000447376 L3MBTL3Q96JM7 780 aaPredicted RBP20.55■□□□□ 0.88
SF3A1-204ENST00000447376 MINPP1Q9UNW1 487 aa20.55■□□□□ 0.88
SF3A1-204ENST00000447376 SPEF2Q9C093 1822 aa20.55■□□□□ 0.88
SF3A1-204ENST00000447376 ATF7IPQ6VMQ6 1270 aa20.54■□□□□ 0.88
SF3A1-204ENST00000447376 HACL1Q9UJ83 578 aa20.54■□□□□ 0.88
SF3A1-204ENST00000447376 DUOX1Q9NRD9 1551 aa20.54■□□□□ 0.88
SF3A1-204ENST00000447376 COL4A1P02462 1669 aa20.54■□□□□ 0.88
SF3A1-204ENST00000447376 CIAPIN1Q6FI81 312 aa20.53■□□□□ 0.88
SF3A1-204ENST00000447376 LDHAL6AQ6ZMR3 332 aa20.53■□□□□ 0.88
SF3A1-204ENST00000447376 USP44Q9H0E7 712 aa20.53■□□□□ 0.88
SF3A1-204ENST00000447376 BICC1Q9H694 974 aaKnown RBP20.53■□□□□ 0.88
SF3A1-204ENST00000447376 CNNM1Q9NRU3 951 aa20.53■□□□□ 0.88
SF3A1-204ENST00000447376 LEMD3Q9Y2U8 911 aa20.53■□□□□ 0.88
SF3A1-204ENST00000447376 EPHA10Q5JZY3 1008 aa20.52■□□□□ 0.88
SF3A1-204ENST00000447376 FTSJ3Q8IY81 847 aaKnown RBP20.52■□□□□ 0.88
SF3A1-204ENST00000447376 SMC1BQ8NDV3 1235 aa20.52■□□□□ 0.88
SF3A1-204ENST00000447376 SCN4AP35499 1836 aa20.51■□□□□ 0.87
SF3A1-204ENST00000447376 ECE2O60344 883 aa20.51■□□□□ 0.87
SF3A1-204ENST00000447376 GNAI3P08754 354 aa20.51■□□□□ 0.87
SF3A1-204ENST00000447376 PNMA8AQ86V59 439 aaPredicted RBP20.51■□□□□ 0.87
SF3A1-204ENST00000447376 DBNDD1Q9H9R9 158 aa20.51■□□□□ 0.87
SF3A1-204ENST00000447376 COL4A5P29400 1685 aa20.51■□□□□ 0.87
SF3A1-204ENST00000447376 LTBP1Q14766 1721 aa20.5■□□□□ 0.87
SF3A1-204ENST00000447376 TRIM27P14373 513 aa20.5■□□□□ 0.87
SF3A1-204ENST00000447376 CHRNDQ07001 517 aa20.5■□□□□ 0.87
SF3A1-204ENST00000447376 CXCL9Q07325 125 aa20.5■□□□□ 0.87
SF3A1-204ENST00000447376 FSTL1Q12841 308 aa20.5■□□□□ 0.87
SF3A1-204ENST00000447376 RABL6Q3YEC7 729 aaPredicted RBP20.5■□□□□ 0.87
SF3A1-204ENST00000447376 INTS3Q68E01 1043 aaKnown RBP20.5■□□□□ 0.87
SF3A1-204ENST00000447376 MED23Q9ULK4 1368 aa20.49■□□□□ 0.87
SF3A1-204ENST00000447376 RAD17O75943 681 aa20.49■□□□□ 0.87
SF3A1-204ENST00000447376 DOK7Q18PE1 504 aa20.49■□□□□ 0.87
SF3A1-204ENST00000447376 CLUAP1Q96AJ1 413 aa20.49■□□□□ 0.87
SF3A1-204ENST00000447376 GPR101Q96P66 508 aaPredicted RBP20.49■□□□□ 0.87
SF3A1-204ENST00000447376 RCAN3Q9UKA8 241 aa20.49■□□□□ 0.87
SF3A1-204ENST00000447376 ZNF804BA4D1E1 1349 aa20.49■□□□□ 0.87
SF3A1-204ENST00000447376 EPHX2P34913 555 aa20.48■□□□□ 0.87
SF3A1-204ENST00000447376 EAPPQ56P03 285 aaPredicted RBP20.48■□□□□ 0.87
SF3A1-204ENST00000447376 KAZALD1Q96I82 304 aa20.48■□□□□ 0.87
SF3A1-204ENST00000447376 ZNF594Q96JF6 807 aaPredicted RBP20.48■□□□□ 0.87
SF3A1-204ENST00000447376 TAF1DQ9H5J8 278 aaPredicted RBP20.48■□□□□ 0.87
SF3A1-204ENST00000447376 POTECB2RU33 542 aa20.47■□□□□ 0.87
SF3A1-204ENST00000447376 MS4A1P11836 297 aa20.47■□□□□ 0.87
SF3A1-204ENST00000447376 CLEC11AQ9Y240 323 aa20.47■□□□□ 0.87
SF3A1-204ENST00000447376 PLIN1O60240 522 aa20.46■□□□□ 0.87
SF3A1-204ENST00000447376 PODNQ7Z5L7 613 aa20.46■□□□□ 0.87
SF3A1-204ENST00000447376 ANKRD44Q8N8A2 993 aa20.46■□□□□ 0.87
SF3A1-204ENST00000447376 YDJCA8MPS7 323 aa20.45■□□□□ 0.86
SF3A1-204ENST00000447376 LDHDQ86WU2 507 aa20.45■□□□□ 0.86
SF3A1-204ENST00000447376 DZIP1LQ8IYY4 767 aaKnown RBP20.45■□□□□ 0.86
SF3A1-204ENST00000447376 COA1Q9GZY4 146 aa20.45■□□□□ 0.86
SF3A1-204ENST00000447376 MROH5Q6ZUA9 1318 aa20.45■□□□□ 0.86
SF3A1-204ENST00000447376 HSPA6P17066 643 aa20.44■□□□□ 0.86
SF3A1-204ENST00000447376 RPS12P25398 132 aaKnown RBP20.44■□□□□ 0.86
SF3A1-204ENST00000447376 GMPSP49915 693 aaPredicted RBP20.44■□□□□ 0.86
SF3A1-204ENST00000447376 CHADLQ6NUI6 762 aa20.44■□□□□ 0.86
SF3A1-204ENST00000447376 HELBQ8NG08 1087 aaPredicted RBP20.44■□□□□ 0.86
SF3A1-204ENST00000447376 MEIS3Q99687 375 aa20.44■□□□□ 0.86
SF3A1-204ENST00000447376 GPRC5DQ9NZD1 345 aa20.44■□□□□ 0.86
SF3A1-204ENST00000447376 LRRFIP2Q9Y608 721 aaKnown RBP20.44■□□□□ 0.86
SF3A1-204ENST00000447376 H7C1D1 291 aa20.43■□□□□ 0.86
SF3A1-204ENST00000447376 PSMD14O00487 310 aa20.43■□□□□ 0.86
SF3A1-204ENST00000447376 TAF5LO75529 589 aa20.43■□□□□ 0.86
SF3A1-204ENST00000447376 SCNN1DP51172 638 aa20.43■□□□□ 0.86
SF3A1-204ENST00000447376 USP50Q70EL3 339 aaPredicted RBP20.43■□□□□ 0.86
SF3A1-204ENST00000447376 ZNF804AQ7Z570 1209 aa20.43■□□□□ 0.86
SF3A1-204ENST00000447376 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.43■□□□□ 0.86
SF3A1-204ENST00000447376 ADARB2Q9NS39 739 aaKnown RBP20.43■□□□□ 0.86
SF3A1-204ENST00000447376 EPS15P42566 896 aa20.42■□□□□ 0.86
SF3A1-204ENST00000447376 METTL24Q5JXM2 366 aa20.42■□□□□ 0.86
SF3A1-204ENST00000447376 ITPRIPQ8IWB1 547 aa20.42■□□□□ 0.86
SF3A1-204ENST00000447376 FBXW7Q969H0 707 aa20.42■□□□□ 0.86
SF3A1-204ENST00000447376 USP17L3A6NCW0 530 aa20.41■□□□□ 0.86
SF3A1-204ENST00000447376 USP17L4A6NCW7 530 aa20.41■□□□□ 0.86
SF3A1-204ENST00000447376 GNAI2P04899 355 aa20.41■□□□□ 0.86
SF3A1-204ENST00000447376 USP17L1Q7RTZ2 530 aa20.41■□□□□ 0.86
SF3A1-204ENST00000447376 TMEM57Q8N5G2 664 aa20.41■□□□□ 0.86
SF3A1-204ENST00000447376 DPF2Q92785 391 aa20.41■□□□□ 0.86
SF3A1-204ENST00000447376 APLP1P51693 650 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms