RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ZNF496Q96IT1 587 aaPredicted RBP13.89□□□□□ -0.19
MSH6-204ENST00000445503 A0A1B0GVL5 298 aa13.88□□□□□ -0.19
MSH6-204ENST00000445503 CCDC144CPQ8IYA2 1237 aa13.88□□□□□ -0.19
MSH6-204ENST00000445503 CDK11BP21127 795 aaKnown RBP13.88□□□□□ -0.19
MSH6-204ENST00000445503 CCDC57Q2TAC2 916 aa13.88□□□□□ -0.19
MSH6-204ENST00000445503 TAF5LO75529 589 aa13.88□□□□□ -0.19
MSH6-204ENST00000445503 SERPINC1P01008 464 aa13.88□□□□□ -0.19
MSH6-204ENST00000445503 SNRPA1P09661 255 aaKnown RBP13.88□□□□□ -0.19
MSH6-204ENST00000445503 LRRFIP1Q32MZ4 808 aaKnown RBP13.88□□□□□ -0.19
MSH6-204ENST00000445503 EPHA10Q5JZY3 1008 aa13.88□□□□□ -0.19
MSH6-204ENST00000445503 TMC6Q7Z403 805 aa13.88□□□□□ -0.19
MSH6-204ENST00000445503 DBNLQ9UJU6 430 aaKnown RBP13.88□□□□□ -0.19
MSH6-204ENST00000445503 NEURL1BA8MQ27 555 aa13.87□□□□□ -0.19
MSH6-204ENST00000445503 GOLGA8BA8MQT2 603 aa13.87□□□□□ -0.19
MSH6-204ENST00000445503 HSP90AA4PQ58FG1 418 aa13.87□□□□□ -0.19
MSH6-204ENST00000445503 RRP12Q5JTH9 1297 aaKnown RBP13.87□□□□□ -0.19
MSH6-204ENST00000445503 ZNF594Q96JF6 807 aaPredicted RBP13.87□□□□□ -0.19
MSH6-204ENST00000445503 CEP170BQ9Y4F5 1589 aaPredicted RBP13.87□□□□□ -0.19
MSH6-204ENST00000445503 ORC3Q9UBD5 711 aaPredicted RBP13.87□□□□□ -0.19
MSH6-204ENST00000445503 DHX32Q7L7V1 743 aaKnown RBP13.87□□□□□ -0.19
MSH6-204ENST00000445503 CHMP4CQ96CF2 233 aa13.87□□□□□ -0.19
MSH6-204ENST00000445503 ADCY9O60503 1353 aa13.87□□□□□ -0.19
MSH6-204ENST00000445503 KDRP35968 1356 aa13.87□□□□□ -0.19
MSH6-204ENST00000445503 PLEKHG1Q9ULL1 1385 aa13.87□□□□□ -0.19
MSH6-204ENST00000445503 CCDC69A6NI79 296 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 ATF3P18847 181 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 ZSCAN25Q6NSZ9 544 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 CCDC82Q8N4S0 544 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 GTF3C6Q969F1 213 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 PAG1Q9NWQ8 432 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 AP5Z1O43299 807 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 HMGB1P09429 215 aaKnown RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 TMX1Q9H3N1 280 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 CLTCQ00610 1675 aaKnown RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 MARCKSP29966 332 aaPredicted RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 COL9A3Q14050 684 aaPredicted RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 MNS1Q8NEH6 495 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 METTL22Q9BUU2 404 aaPredicted RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 CTAGE5O15320 804 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 DHX16O60231 1041 aaKnown RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 IDH1O75874 414 aaKnown RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 CYP21A2P08686 494 aa13.86□□□□□ -0.19
MSH6-204ENST00000445503 IMMTQ16891 758 aaKnown RBP13.86□□□□□ -0.19
MSH6-204ENST00000445503 KLF18A0A0U1RQI7 1052 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 TOB2Q14106 344 aaPredicted RBP13.85□□□□□ -0.19
MSH6-204ENST00000445503 IFNL2Q8IZJ0 200 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 DDX17Q92841 729 aaKnown RBP13.85□□□□□ -0.19
MSH6-204ENST00000445503 USP28Q96RU2 1077 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 SFPQP23246 707 aaKnown RBP eCLIP13.85□□□□□ -0.19
MSH6-204ENST00000445503 ARID5BQ14865 1188 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 TTLL5Q6EMB2 1281 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 KIF18AQ8NI77 898 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 KCNF1Q9H3M0 494 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 STRN4Q9NRL3 753 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.85□□□□□ -0.19
MSH6-204ENST00000445503 RXRAP19793 462 aa13.85□□□□□ -0.19
MSH6-204ENST00000445503 IGKV5-2P06315 115 aa13.84□□□□□ -0.19
MSH6-204ENST00000445503 SLC3A2P08195 630 aaKnown RBP13.84□□□□□ -0.19
MSH6-204ENST00000445503 SCRN1Q12765 414 aa13.84□□□□□ -0.19
MSH6-204ENST00000445503 CACTINQ8WUQ7 758 aaKnown RBP13.84□□□□□ -0.19
MSH6-204ENST00000445503 LMOD1P29536 600 aaPredicted RBP13.84□□□□□ -0.19
MSH6-204ENST00000445503 CFAP100Q494V2 611 aa13.84□□□□□ -0.19
MSH6-204ENST00000445503 TOM1L2Q6ZVM7 507 aa13.84□□□□□ -0.19
MSH6-204ENST00000445503 PGBD1Q96JS3 809 aa13.84□□□□□ -0.19
MSH6-204ENST00000445503 KNDC1Q76NI1 1749 aa13.84□□□□□ -0.19
MSH6-204ENST00000445503 EVA1CP58658 441 aa13.84□□□□□ -0.19
MSH6-204ENST00000445503 NAA30Q147X3 362 aaPredicted RBP13.84□□□□□ -0.19
MSH6-204ENST00000445503 OLFM4Q6UX06 510 aa13.83□□□□□ -0.19
MSH6-204ENST00000445503 MRPS27Q92552 414 aaKnown RBP13.83□□□□□ -0.19
MSH6-204ENST00000445503 CNNM1Q9NRU3 951 aa13.83□□□□□ -0.19
MSH6-204ENST00000445503 CTNNA3Q9UI47 895 aa13.83□□□□□ -0.19
MSH6-204ENST00000445503 ATP5JP18859 108 aa13.83□□□□□ -0.2
MSH6-204ENST00000445503 C11orf57Q6ZUT1 292 aaPredicted RBP13.83□□□□□ -0.2
MSH6-204ENST00000445503 ERICH4A6NGS2 130 aa13.83□□□□□ -0.2
MSH6-204ENST00000445503 CWC25Q9NXE8 425 aaPredicted RBP13.83□□□□□ -0.2
MSH6-204ENST00000445503 SMAP1Q8IYB5 467 aaPredicted RBP13.83□□□□□ -0.2
MSH6-204ENST00000445503 ADAMTS13Q76LX8 1427 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 SMTNL1A8MU46 457 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 IFNKQ9P0W0 207 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 PAXBP1Q9Y5B6 917 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 ZNF213O14771 459 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 GPTP24298 496 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 MTX1Q13505 466 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 MICU3Q86XE3 530 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 KBTBD3Q8NAB2 608 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 ST3GAL1Q11201 340 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 ZBTB9Q96C00 473 aa13.82□□□□□ -0.2
MSH6-204ENST00000445503 ANKRD26Q9UPS8 1709 aa13.81□□□□□ -0.2
MSH6-204ENST00000445503 SNW1Q13573 536 aaKnown RBP13.81□□□□□ -0.2
MSH6-204ENST00000445503 SLC52A2Q9HAB3 445 aa13.81□□□□□ -0.2
MSH6-204ENST00000445503 GPHNQ9NQX3 736 aaPredicted RBP13.81□□□□□ -0.2
MSH6-204ENST00000445503 METTL24Q5JXM2 366 aa13.81□□□□□ -0.2
MSH6-204ENST00000445503 NRKQ7Z2Y5 1582 aa13.81□□□□□ -0.2
MSH6-204ENST00000445503 AXIN2Q9Y2T1 843 aa13.81□□□□□ -0.2
MSH6-204ENST00000445503 PRC1O43663 620 aa13.81□□□□□ -0.2
MSH6-204ENST00000445503 FAM160A1Q05DH4 1040 aa13.81□□□□□ -0.2
MSH6-204ENST00000445503 CGNQ9P2M7 1197 aaKnown RBP13.81□□□□□ -0.2
MSH6-204ENST00000445503 URI1O94763 535 aaPredicted RBP13.8□□□□□ -0.2
MSH6-204ENST00000445503 CAVIN2O95810 425 aa13.8□□□□□ -0.2
MSH6-204ENST00000445503 A1BGP04217 495 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms