RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 ABCC12Q96J65 1359 aa10.02□□□□□ -0.81
CD44-211ENST00000442151 EYA3Q99504 573 aa10.02□□□□□ -0.81
CD44-211ENST00000442151 RTFDC1Q9BY42 306 aaPredicted RBP10.02□□□□□ -0.81
CD44-211ENST00000442151 RTN4Q9NQC3 1192 aaKnown RBP10.02□□□□□ -0.81
CD44-211ENST00000442151 ZNRF3Q9ULT6 936 aa10.02□□□□□ -0.81
CD44-211ENST00000442151 TMEM88BA6NKF7 163 aa10.01□□□□□ -0.81
CD44-211ENST00000442151 ANP32CO43423 234 aa10.01□□□□□ -0.81
CD44-211ENST00000442151 ANXA1P04083 346 aa10.01□□□□□ -0.81
CD44-211ENST00000442151 ZNF853P0CG23 659 aa10.01□□□□□ -0.81
CD44-211ENST00000442151 SF3B3Q15393 1217 aaKnown RBP10.01□□□□□ -0.81
CD44-211ENST00000442151 PROSER3Q2NL68 480 aa10.01□□□□□ -0.81
CD44-211ENST00000442151 ISCA1Q9BUE6 129 aa10.01□□□□□ -0.81
CD44-211ENST00000442151 TCERG1O14776 1098 aaKnown RBP10□□□□□ -0.81
CD44-211ENST00000442151 CCDC27Q2M243 656 aa10□□□□□ -0.81
CD44-211ENST00000442151 CCDC191Q8NCU4 936 aa10□□□□□ -0.81
CD44-211ENST00000442151 STK31Q9BXU1 1019 aa10□□□□□ -0.81
CD44-211ENST00000442151 MBIPQ9NS73 344 aa10□□□□□ -0.81
CD44-211ENST00000442151 ABCC4O15439 1325 aa10□□□□□ -0.81
CD44-211ENST00000442151 CACNA1SQ13698 1873 aa10□□□□□ -0.81
CD44-211ENST00000442151 G3V3G9 751 aa10□□□□□ -0.81
CD44-211ENST00000442151 HCLS1P14317 486 aaPredicted RBP10□□□□□ -0.81
CD44-211ENST00000442151 NEXNQ0ZGT2 675 aa10□□□□□ -0.81
CD44-211ENST00000442151 DCAF8Q5TAQ9 597 aa10□□□□□ -0.81
CD44-211ENST00000442151 CNTROBQ8N137 903 aa10□□□□□ -0.81
CD44-211ENST00000442151 ZBTB38Q8NAP3 1195 aaPredicted RBP10□□□□□ -0.81
CD44-211ENST00000442151 AIDAQ96BJ3 306 aa10□□□□□ -0.81
CD44-211ENST00000442151 ADARB2Q9NS39 739 aaKnown RBP10□□□□□ -0.81
CD44-211ENST00000442151 CDHR2Q9BYE9 1310 aa10□□□□□ -0.81
CD44-211ENST00000442151 H7C1D1 291 aa9.99□□□□□ -0.81
CD44-211ENST00000442151 CIAPIN1Q6FI81 312 aa9.99□□□□□ -0.81
CD44-211ENST00000442151 BCL2L13Q9BXK5 485 aa9.99□□□□□ -0.81
CD44-211ENST00000442151 ZNF541Q9H0D2 1346 aa9.99□□□□□ -0.81
CD44-211ENST00000442151 IRS4O14654 1257 aaPredicted RBP9.98□□□□□ -0.81
CD44-211ENST00000442151 KIAA2012Q0VF49 1180 aa9.98□□□□□ -0.81
CD44-211ENST00000442151 CCDC152Q4G0S7 254 aa9.98□□□□□ -0.81
CD44-211ENST00000442151 OLFM4Q6UX06 510 aa9.98□□□□□ -0.81
CD44-211ENST00000442151 ZC3H15Q8WU90 426 aaKnown RBP9.98□□□□□ -0.81
CD44-211ENST00000442151 CWC25Q9NXE8 425 aaPredicted RBP9.98□□□□□ -0.81
CD44-211ENST00000442151 PCDHB8Q9UN66 801 aa9.98□□□□□ -0.81
CD44-211ENST00000442151 IL16Q14005 1332 aa9.98□□□□□ -0.81
CD44-211ENST00000442151 ECE1P42892 770 aa9.98□□□□□ -0.81
CD44-211ENST00000442151 RPS8P62241 208 aaKnown RBP9.98□□□□□ -0.81
CD44-211ENST00000442151 HTRA3P83110 453 aa9.98□□□□□ -0.81
CD44-211ENST00000442151 PASKQ96RG2 1323 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 ATP5J2-PTCD1G3V325 749 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 C6orf229H3BNL8 230 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 PDE8AO60658 829 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 ITGBL1O95965 494 aaPredicted RBP9.97□□□□□ -0.81
CD44-211ENST00000442151 PCCAP05165 728 aaPredicted RBP9.97□□□□□ -0.81
CD44-211ENST00000442151 AOC3Q16853 763 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 KRT24Q2M2I5 525 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 WASHC4Q2M389 1173 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 DEFB115Q30KQ5 88 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 FAM89AQ96GI7 184 aa9.97□□□□□ -0.81
CD44-211ENST00000442151 METTL22Q9BUU2 404 aaPredicted RBP9.97□□□□□ -0.81
CD44-211ENST00000442151 ZC3H12CQ9C0D7 883 aaKnown RBP9.97□□□□□ -0.81
CD44-211ENST00000442151 NSFL1CQ9UNZ2 370 aaKnown RBP9.97□□□□□ -0.81
CD44-211ENST00000442151 HSPA1AP0DMV8 641 aaKnown RBP9.96□□□□□ -0.81
CD44-211ENST00000442151 HSPA1BP0DMV9 641 aaKnown RBP9.96□□□□□ -0.81
CD44-211ENST00000442151 RPS12P25398 132 aaKnown RBP9.96□□□□□ -0.81
CD44-211ENST00000442151 DPF2Q92785 391 aa9.96□□□□□ -0.81
CD44-211ENST00000442151 MYD88Q99836 296 aa9.96□□□□□ -0.81
CD44-211ENST00000442151 ZSWIM6Q9HCJ5 1215 aa9.96□□□□□ -0.81
CD44-211ENST00000442151 GPRC5DQ9NZD1 345 aa9.96□□□□□ -0.81
CD44-211ENST00000442151 CNTNAP1P78357 1384 aa9.96□□□□□ -0.82
CD44-211ENST00000442151 ANKRD36CQ5JPF3 1778 aa9.96□□□□□ -0.82
CD44-211ENST00000442151 ZNF316A6NFI3 1004 aaPredicted RBP9.96□□□□□ -0.82
CD44-211ENST00000442151 ELL2O00472 640 aaPredicted RBP9.96□□□□□ -0.82
CD44-211ENST00000442151 MAP2K1Q02750 393 aaPredicted RBP9.96□□□□□ -0.82
CD44-211ENST00000442151 CXCL9Q07325 125 aa9.96□□□□□ -0.82
CD44-211ENST00000442151 KSR2Q6VAB6 950 aa9.96□□□□□ -0.82
CD44-211ENST00000442151 WDR63Q8IWG1 891 aa9.96□□□□□ -0.82
CD44-211ENST00000442151 CDC5LQ99459 802 aaKnown RBP9.96□□□□□ -0.82
CD44-211ENST00000442151 BEGAINQ9BUH8 593 aa9.96□□□□□ -0.82
CD44-211ENST00000442151 MKRN1Q9UHC7 482 aaKnown RBP9.96□□□□□ -0.82
CD44-211ENST00000442151 ABT1Q9ULW3 272 aaKnown RBP9.96□□□□□ -0.82
CD44-211ENST00000442151 SNED1Q8TER0 1413 aa9.95□□□□□ -0.82
CD44-211ENST00000442151 MRS2Q9HD23 443 aa9.95□□□□□ -0.82
CD44-211ENST00000442151 RASSF10A6NK89 507 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 ATP2B4P23634 1241 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 EPS15P42566 896 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 CTCFP49711 727 aaPredicted RBP9.94□□□□□ -0.82
CD44-211ENST00000442151 MMP14P50281 582 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 SCNN1DP51172 638 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 MAP1SQ66K74 1059 aaPredicted RBP9.94□□□□□ -0.82
CD44-211ENST00000442151 CDC37L1Q7L3B6 337 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 ANKRD18AQ8IVF6 992 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 TNS4Q8IZW8 715 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 C8orf58Q8NAV2 365 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 MYH16Q9H6N6 1097 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 PODXL2Q9NZ53 605 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 ANKIB1Q9P2G1 1089 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 GGA1Q9UJY5 639 aa9.94□□□□□ -0.82
CD44-211ENST00000442151 PYGBP11216 843 aa9.93□□□□□ -0.82
CD44-211ENST00000442151 GMPSP49915 693 aaPredicted RBP9.93□□□□□ -0.82
CD44-211ENST00000442151 TWISTNBQ3B726 338 aaPredicted RBP9.93□□□□□ -0.82
CD44-211ENST00000442151 WWC1Q8IX03 1113 aa9.93□□□□□ -0.82
CD44-211ENST00000442151 PRDM10Q9NQV6 1147 aa9.93□□□□□ -0.82
CD44-211ENST00000442151 HCSTQ9UBK5 93 aa9.93□□□□□ -0.82
CD44-211ENST00000442151 PGAP2Q9UHJ9 254 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms