RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 LPIN2Q92539 896 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 XAGE2Q96GT9 111 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 PUS3Q9BZE2 481 aaKnown RBP7.24□□□□□ -1.25
VPS50-205ENST00000441602 NBR1Q14596 966 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 NLRP3Q96P20 1036 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 LSG1Q9H089 658 aaKnown RBP7.23□□□□□ -1.25
VPS50-205ENST00000441602 GNL3LQ9NVN8 582 aaKnown RBP7.23□□□□□ -1.25
VPS50-205ENST00000441602 NUP98P52948 1817 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 GOLIM4O00461 696 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 TIMM10P62072 90 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 NUCB2P80303 420 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 MCMDC2Q4G0Z9 681 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 CHMP4CQ96CF2 233 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 IL17RAQ96F46 866 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 GBP4Q96PP9 640 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 RIPOR2Q9Y4F9 1068 aa7.23□□□□□ -1.25
VPS50-205ENST00000441602 GOLGA6L22H0YM25 854 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 PDE8BO95263 885 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 SSFA2P28290 1259 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 SF3B3Q15393 1217 aaKnown RBP7.22□□□□□ -1.25
VPS50-205ENST00000441602 USPL1Q5W0Q7 1092 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 BICDL1Q6ZP65 573 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 ZNF512BQ96KM6 892 aaPredicted RBP7.22□□□□□ -1.25
VPS50-205ENST00000441602 KIF2CQ99661 725 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 TM6SF1Q9BZW5 370 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 SNRKQ9NRH2 765 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 BTAF1O14981 1849 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 RNF113AO15541 343 aaKnown RBP7.22□□□□□ -1.25
VPS50-205ENST00000441602 SLC10A5Q5PT55 438 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 ZSCAN31Q96LW9 406 aaPredicted RBP7.22□□□□□ -1.25
VPS50-205ENST00000441602 CTNNA3Q9UI47 895 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 CYP46A1Q9Y6A2 500 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 COL5A3P25940 1745 aaPredicted RBP7.22□□□□□ -1.25
VPS50-205ENST00000441602 ANKRD1Q15327 319 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 DDX46Q7L014 1031 aaKnown RBP7.22□□□□□ -1.25
VPS50-205ENST00000441602 SPRYD3Q8NCJ5 442 aa7.22□□□□□ -1.25
VPS50-205ENST00000441602 RBM8AQ9Y5S9 174 aaKnown RBP7.22□□□□□ -1.25
VPS50-205ENST00000441602 FKBP4Q02790 459 aaKnown RBP eCLIP7.21□□□□□ -1.25
VPS50-205ENST00000441602 ANKRD2Q9GZV1 360 aa7.21□□□□□ -1.25
VPS50-205ENST00000441602 SPEF2Q9C093 1822 aa7.21□□□□□ -1.25
VPS50-205ENST00000441602 TUBGCP6Q96RT7 1819 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 WASHC4Q2M389 1173 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 PRPF40BQ6NWY9 871 aaKnown RBP7.21□□□□□ -1.26
VPS50-205ENST00000441602 SYNE4Q8N205 404 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 FLAD1Q8NFF5 587 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 ST5P78524 1137 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 NFKBIBQ15653 356 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 ERFEQ4G0M1 354 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 FAM182BQ5T319 152 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 MAP4K1Q92918 833 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 FAM227BQ96M60 508 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 JAKMIP1Q96N16 626 aaKnown RBP7.21□□□□□ -1.26
VPS50-205ENST00000441602 SNX14Q9Y5W7 946 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 CARMIL3Q8ND23 1372 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 MED23Q9ULK4 1368 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 RIC1Q4ADV7 1423 aa7.21□□□□□ -1.26
VPS50-205ENST00000441602 BCORQ6W2J9 1755 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 A0A0D9SFI3 127 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 DDX11L8A8MPP1 907 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 RXRBP28702 533 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 ZMYM1Q5SVZ6 1142 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 CREB3L3Q68CJ9 461 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 BLOC1S2Q6QNY1 142 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 ARHGEF1Q92888 912 aaKnown RBP7.2□□□□□ -1.26
VPS50-205ENST00000441602 DSCC1Q9BVC3 393 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 SH2B1Q9NRF2 756 aaPredicted RBP7.2□□□□□ -1.26
VPS50-205ENST00000441602 PHF14O94880 888 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 HMGB1P09429 215 aaKnown RBP7.2□□□□□ -1.26
VPS50-205ENST00000441602 UBE4AQ14139 1066 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 CAVIN4Q5BKX8 364 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 TBC1D9BQ66K14 1250 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 APPBP2Q92624 585 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 KCNB2Q92953 911 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 INTS4Q96HW7 963 aaKnown RBP7.2□□□□□ -1.26
VPS50-205ENST00000441602 PDRG1Q9NUG6 133 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 MYH3P11055 1940 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 SCN7AQ01118 1682 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 PDIA4P13667 645 aaKnown RBP7.2□□□□□ -1.26
VPS50-205ENST00000441602 ADORA1P30542 326 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 MAP3K12Q12852 859 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 VPS37DQ86XT2 251 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 CNBD1Q8NA66 436 aa7.2□□□□□ -1.26
VPS50-205ENST00000441602 SRP68Q9UHB9 627 aaKnown RBP7.2□□□□□ -1.26
VPS50-205ENST00000441602 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.2□□□□□ -1.26
VPS50-205ENST00000441602 TRIM37O94972 964 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 ARID4AP29374 1257 aaPredicted RBP7.19□□□□□ -1.26
VPS50-205ENST00000441602 FGD1P98174 961 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 VPS53Q5VIR6 699 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 ANTXR1Q9H6X2 564 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 BSDC1Q9NW68 430 aaPredicted RBP7.19□□□□□ -1.26
VPS50-205ENST00000441602 LIMCH1Q9UPQ0 1083 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.19□□□□□ -1.26
VPS50-205ENST00000441602 SLC27A2O14975 620 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 TAF5LO75529 589 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 CASTP20810 708 aaKnown RBP7.19□□□□□ -1.26
VPS50-205ENST00000441602 KCNQ4P56696 695 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 CCDC102BQ68D86 513 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 PALD1Q9ULE6 856 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 LAMB2P55268 1798 aa7.19□□□□□ -1.26
VPS50-205ENST00000441602 LRP5O75197 1615 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms