RNA–Protein interactions for RNA: ENST00000436324.5

HMGN1-207, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-207ENST00000436324 FAM161AQ3B820 660 aa23.24■■□□□ 1.31
HMGN1-207ENST00000436324 DNAJC5GQ8N7S2 189 aa23.24■■□□□ 1.31
HMGN1-207ENST00000436324 SSH1Q8WYL5 1049 aa23.24■■□□□ 1.31
HMGN1-207ENST00000436324 BCL2L13Q9BXK5 485 aa23.24■■□□□ 1.31
HMGN1-207ENST00000436324 ZC3H12CQ9C0D7 883 aaKnown RBP23.24■■□□□ 1.31
HMGN1-207ENST00000436324 G3V3G9 751 aa23.23■■□□□ 1.31
HMGN1-207ENST00000436324 ITGA6P23229 1130 aa23.23■■□□□ 1.31
HMGN1-207ENST00000436324 DCAF8Q5TAQ9 597 aa23.23■■□□□ 1.31
HMGN1-207ENST00000436324 MAP1SQ66K74 1059 aaPredicted RBP23.23■■□□□ 1.31
HMGN1-207ENST00000436324 ECE2O60344 883 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 IGHMBP2P38935 993 aaKnown RBP23.22■■□□□ 1.31
HMGN1-207ENST00000436324 SRCIN1Q9C0H9 1055 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 KCNQ5Q9NR82 932 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 BSDC1Q9NW68 430 aaPredicted RBP23.22■■□□□ 1.31
HMGN1-207ENST00000436324 C9orf78Q9NZ63 289 aaPredicted RBP23.22■■□□□ 1.31
HMGN1-207ENST00000436324 GPRC5DQ9NZD1 345 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 CHMP3Q9Y3E7 222 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 XDHP47989 1333 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 RTL9Q8NET4 1388 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 LTBP1Q14766 1721 aa23.22■■□□□ 1.31
HMGN1-207ENST00000436324 WTIPA6NIX2 430 aaPredicted RBP23.21■■□□□ 1.31
HMGN1-207ENST00000436324 CSF1RP07333 972 aa23.21■■□□□ 1.31
HMGN1-207ENST00000436324 MINPP1Q9UNW1 487 aa23.21■■□□□ 1.31
HMGN1-207ENST00000436324 GRM8O00222 908 aa23.2■■□□□ 1.3
HMGN1-207ENST00000436324 PSMD14O00487 310 aa23.2■■□□□ 1.3
HMGN1-207ENST00000436324 ALDH1L1O75891 902 aa23.2■■□□□ 1.3
HMGN1-207ENST00000436324 ATP2B4P23634 1241 aa23.2■■□□□ 1.3
HMGN1-207ENST00000436324 FOXO4P98177 505 aa23.2■■□□□ 1.3
HMGN1-207ENST00000436324 TRMT2AQ8IZ69 625 aaKnown RBP23.2■■□□□ 1.3
HMGN1-207ENST00000436324 ZBTB12Q9Y330 459 aaPredicted RBP23.2■■□□□ 1.3
HMGN1-207ENST00000436324 EPHA10Q5JZY3 1008 aa23.19■■□□□ 1.3
HMGN1-207ENST00000436324 CNTROBQ8N137 903 aa23.19■■□□□ 1.3
HMGN1-207ENST00000436324 MPHOSPH8Q99549 860 aa23.19■■□□□ 1.3
HMGN1-207ENST00000436324 SHTN1A0MZ66 631 aa23.18■■□□□ 1.3
HMGN1-207ENST00000436324 ANKRD18BA2A2Z9 1011 aa23.18■■□□□ 1.3
HMGN1-207ENST00000436324 ITGBL1O95965 494 aaPredicted RBP23.18■■□□□ 1.3
HMGN1-207ENST00000436324 USP50Q70EL3 339 aaPredicted RBP23.18■■□□□ 1.3
HMGN1-207ENST00000436324 KLRG1Q96E93 195 aa23.18■■□□□ 1.3
HMGN1-207ENST00000436324 ADARB2Q9NS39 739 aaKnown RBP23.18■■□□□ 1.3
HMGN1-207ENST00000436324 MYH3P11055 1940 aa23.18■■□□□ 1.3
HMGN1-207ENST00000436324 LMBR1LQ6UX01 489 aa23.17■■□□□ 1.3
HMGN1-207ENST00000436324 SMC4Q9NTJ3 1288 aa23.17■■□□□ 1.3
HMGN1-207ENST00000436324 CNOT7Q9UIV1 285 aaKnown RBP23.17■■□□□ 1.3
HMGN1-207ENST00000436324 PTPRCP08575 1304 aa23.16■■□□□ 1.3
HMGN1-207ENST00000436324 PASKQ96RG2 1323 aa23.16■■□□□ 1.3
HMGN1-207ENST00000436324 IFIT5Q13325 482 aaKnown RBP23.16■■□□□ 1.3
HMGN1-207ENST00000436324 CCT4P50991 539 aaKnown RBP23.15■■□□□ 1.3
HMGN1-207ENST00000436324 ALDH1L2Q3SY69 923 aa23.15■■□□□ 1.3
HMGN1-207ENST00000436324 MICALL2Q8IY33 904 aa23.15■■□□□ 1.3
HMGN1-207ENST00000436324 ADAMTSL1Q8N6G6 1762 aa23.14■■□□□ 1.3
HMGN1-207ENST00000436324 H7C1D1 291 aa23.14■■□□□ 1.29
HMGN1-207ENST00000436324 SUCLG2Q96I99 432 aa23.14■■□□□ 1.29
HMGN1-207ENST00000436324 SPEF2Q9C093 1822 aa23.14■■□□□ 1.29
HMGN1-207ENST00000436324 NBPF7P0C2Y1 421 aaPredicted RBP23.13■■□□□ 1.29
HMGN1-207ENST00000436324 TRPM4Q8TD43 1214 aa23.13■■□□□ 1.29
HMGN1-207ENST00000436324 ZNF594Q96JF6 807 aaPredicted RBP23.13■■□□□ 1.29
HMGN1-207ENST00000436324 ANKRD2Q9GZV1 360 aa23.13■■□□□ 1.29
HMGN1-207ENST00000436324 CREBZFQ9NS37 354 aa23.13■■□□□ 1.29
HMGN1-207ENST00000436324 HIRAP54198 1017 aaPredicted RBP23.12■■□□□ 1.29
HMGN1-207ENST00000436324 FMR1Q06787 632 aaKnown RBP eCLIP23.12■■□□□ 1.292e-6■□□□□ 10.3
HMGN1-207ENST00000436324 CHRNDQ07001 517 aa23.12■■□□□ 1.29
HMGN1-207ENST00000436324 CCDC57Q2TAC2 916 aa23.12■■□□□ 1.29
HMGN1-207ENST00000436324 TAF7LQ5H9L4 462 aa23.12■■□□□ 1.29
HMGN1-207ENST00000436324 DPF2Q92785 391 aa23.12■■□□□ 1.29
HMGN1-207ENST00000436324 VIL1P09327 827 aaKnown RBP23.11■■□□□ 1.29
HMGN1-207ENST00000436324 KCNJ4P48050 445 aa23.11■■□□□ 1.29
HMGN1-207ENST00000436324 RBM26Q5T8P6 1007 aaKnown RBP23.11■■□□□ 1.29
HMGN1-207ENST00000436324 SAMD7Q7Z3H4 446 aa23.11■■□□□ 1.29
HMGN1-207ENST00000436324 PIAS4Q8N2W9 510 aaPredicted RBP23.11■■□□□ 1.29
HMGN1-207ENST00000436324 HELBQ8NG08 1087 aaPredicted RBP23.11■■□□□ 1.29
HMGN1-207ENST00000436324 MKRN1Q9UHC7 482 aaKnown RBP23.11■■□□□ 1.29
HMGN1-207ENST00000436324 LEMD3Q9Y2U8 911 aa23.11■■□□□ 1.29
HMGN1-207ENST00000436324 ZNF804BA4D1E1 1349 aa23.1■■□□□ 1.29
HMGN1-207ENST00000436324 TMEM88BA6NKF7 163 aa23.1■■□□□ 1.29
HMGN1-207ENST00000436324 TAF5LO75529 589 aa23.1■■□□□ 1.29
HMGN1-207ENST00000436324 CT47B1P0C2W7 299 aaPredicted RBP23.1■■□□□ 1.29
HMGN1-207ENST00000436324 RPS12P25398 132 aaKnown RBP23.1■■□□□ 1.29
HMGN1-207ENST00000436324 TBC1D10BQ4KMP7 808 aaPredicted RBP23.1■■□□□ 1.29
HMGN1-207ENST00000436324 TXNRD3Q86VQ6 643 aa23.1■■□□□ 1.29
HMGN1-207ENST00000436324 KAZALD1Q96I82 304 aa23.1■■□□□ 1.29
HMGN1-207ENST00000436324 NOB1Q9ULX3 412 aaKnown RBP23.1■■□□□ 1.29
HMGN1-207ENST00000436324 MED23Q9ULK4 1368 aa23.1■■□□□ 1.29
HMGN1-207ENST00000436324 CEP350Q5VT06 3117 aa23.1■■□□□ 1.29
HMGN1-207ENST00000436324 SNAP23O00161 211 aa23.09■■□□□ 1.29
HMGN1-207ENST00000436324 TRAF5O00463 557 aa23.09■■□□□ 1.29
HMGN1-207ENST00000436324 KLRK1P26718 216 aa23.09■■□□□ 1.29
HMGN1-207ENST00000436324 HNRNPUQ00839 825 aaKnown RBP eCLIP23.09■■□□□ 1.29
HMGN1-207ENST00000436324 FBXW7Q969H0 707 aa23.09■■□□□ 1.29
HMGN1-207ENST00000436324 PLIN1O60240 522 aa23.08■■□□□ 1.29
HMGN1-207ENST00000436324 LDHAL6AQ6ZMR3 332 aa23.08■■□□□ 1.29
HMGN1-207ENST00000436324 PODNQ7Z5L7 613 aa23.08■■□□□ 1.29
HMGN1-207ENST00000436324 BICC1Q9H694 974 aaKnown RBP23.08■■□□□ 1.29
HMGN1-207ENST00000436324 CNNM1Q9NRU3 951 aa23.08■■□□□ 1.29
HMGN1-207ENST00000436324 UTYO14607 1347 aa23.08■■□□□ 1.28
HMGN1-207ENST00000436324 EGFRP00533 1210 aa23.07■■□□□ 1.28
HMGN1-207ENST00000436324 RSBN1LQ6PCB5 846 aaPredicted RBP23.07■■□□□ 1.28
HMGN1-207ENST00000436324 USP17L3A6NCW0 530 aa23.06■■□□□ 1.28
HMGN1-207ENST00000436324 USP17L4A6NCW7 530 aa23.06■■□□□ 1.28
HMGN1-207ENST00000436324 RARSP54136 660 aaKnown RBP23.06■■□□□ 1.28
HMGN1-207ENST00000436324 USP17L1Q7RTZ2 530 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms