RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 LEO1Q8WVC0 666 aaPredicted RBP16.15■□□□□ 0.18
COL6A3-207ENST00000433762 CLSTN2Q9H4D0 955 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 CFAP45Q9UL16 551 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 KCPQ6ZWJ8 1503 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 RESTQ13127 1097 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 RGS22Q8NE09 1264 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 ABCC12Q96J65 1359 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 GOLGA6L4A6NEF3 574 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 ERVV-2B6SEH9 535 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 FOXO4P98177 505 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 NOLC1Q14978 699 aaKnown RBP eCLIP16.14■□□□□ 0.17
COL6A3-207ENST00000433762 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.14■□□□□ 0.17
COL6A3-207ENST00000433762 DBNDD2Q9BQY9 259 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 SPATA31A3Q5VYP0 1347 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 PCDH11XQ9BZA7 1347 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 PCDH11YQ9BZA8 1340 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 CYP21A2P08686 494 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 GTF2F1P35269 517 aaKnown RBP eCLIP16.14■□□□□ 0.17
COL6A3-207ENST00000433762 TYRO3Q06418 890 aa16.14■□□□□ 0.17
COL6A3-207ENST00000433762 LRRFIP1Q32MZ4 808 aaKnown RBP16.14■□□□□ 0.17
COL6A3-207ENST00000433762 DHX32Q7L7V1 743 aaKnown RBP16.14■□□□□ 0.17
COL6A3-207ENST00000433762 TNS2Q63HR2 1409 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 CSB-PGBD3P0DP91 1061 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 ZMYM1Q5SVZ6 1142 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 CCDC191Q8NCU4 936 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 TNMDQ9H2S6 317 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 CWC25Q9NXE8 425 aaPredicted RBP16.13■□□□□ 0.17
COL6A3-207ENST00000433762 DDX60Q8IY21 1712 aaKnown RBP16.13■□□□□ 0.17
COL6A3-207ENST00000433762 PRKCSHP14314 528 aaPredicted RBP16.13■□□□□ 0.17
COL6A3-207ENST00000433762 NKX1-1Q15270 411 aaPredicted RBP16.13■□□□□ 0.17
COL6A3-207ENST00000433762 Q6ZUG5 572 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 ATG9AQ7Z3C6 839 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 MYRIPQ8NFW9 859 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 MRVI1Q9Y6F6 885 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 TAF6LQ9Y6J9 622 aa16.13■□□□□ 0.17
COL6A3-207ENST00000433762 CTAGE5O15320 804 aa16.12■□□□□ 0.17
COL6A3-207ENST00000433762 LMBR1LQ6UX01 489 aa16.12■□□□□ 0.17
COL6A3-207ENST00000433762 SHANK3Q9BYB0 1731 aa16.12■□□□□ 0.17
COL6A3-207ENST00000433762 LIG1P18858 919 aa16.12■□□□□ 0.17
COL6A3-207ENST00000433762 TDRD7Q8NHU6 1098 aaKnown RBP16.12■□□□□ 0.17
COL6A3-207ENST00000433762 PAG1Q9NWQ8 432 aa16.12■□□□□ 0.17
COL6A3-207ENST00000433762 MYH7P12883 1935 aa16.11■□□□□ 0.17
COL6A3-207ENST00000433762 EXOSC10Q01780 885 aaKnown RBP16.11■□□□□ 0.17
COL6A3-207ENST00000433762 DDX54Q8TDD1 881 aaKnown RBP16.11■□□□□ 0.17
COL6A3-207ENST00000433762 BRF1Q92994 677 aa16.11■□□□□ 0.17
COL6A3-207ENST00000433762 EDC3Q96F86 508 aaKnown RBP16.11■□□□□ 0.17
COL6A3-207ENST00000433762 EVCP57679 992 aa16.11■□□□□ 0.17
COL6A3-207ENST00000433762 FERMT3Q86UX7 667 aa16.11■□□□□ 0.17
COL6A3-207ENST00000433762 KIAA1524Q8TCG1 905 aa16.11■□□□□ 0.17
COL6A3-207ENST00000433762 ZNF274Q96GC6 653 aaPredicted RBP16.11■□□□□ 0.17
COL6A3-207ENST00000433762 DNAJC2Q99543 621 aaKnown RBP16.11■□□□□ 0.17
COL6A3-207ENST00000433762 DACT1Q9NYF0 836 aa16.11■□□□□ 0.17
COL6A3-207ENST00000433762 EYA2O00167 538 aa16.1■□□□□ 0.17
COL6A3-207ENST00000433762 COL9A3Q14050 684 aaPredicted RBP16.1■□□□□ 0.17
COL6A3-207ENST00000433762 SLAIN2Q9P270 581 aa16.1■□□□□ 0.17
COL6A3-207ENST00000433762 SALL1Q9NSC2 1324 aa16.1■□□□□ 0.17
COL6A3-207ENST00000433762 H3BQV1 296 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 IFFO2Q5TF58 517 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 TCEANC2Q96MN5 208 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 RCOR1Q9UKL0 485 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 NBPF26B4DH59 902 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 ZFYP08048 801 aaPredicted RBP16.09■□□□□ 0.17
COL6A3-207ENST00000433762 CDC25BP30305 580 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 NBPF14Q5TI25 921 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 NBPF10Q6P3W6 841 aaKnown RBP16.09■□□□□ 0.17
COL6A3-207ENST00000433762 NBPF15Q8N660 670 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 NSUN7Q8NE18 718 aaKnown RBP16.09■□□□□ 0.17
COL6A3-207ENST00000433762 WDR17Q8IZU2 1322 aa16.09■□□□□ 0.17
COL6A3-207ENST00000433762 ATP5J2-PTCD1G3V325 749 aa16.08■□□□□ 0.17
COL6A3-207ENST00000433762 PTCD1O75127 700 aaKnown RBP16.08■□□□□ 0.17
COL6A3-207ENST00000433762 HSP90B1P14625 803 aaKnown RBP16.08■□□□□ 0.17
COL6A3-207ENST00000433762 SCRN1Q12765 414 aa16.08■□□□□ 0.17
COL6A3-207ENST00000433762 LTBP4Q8N2S1 1624 aa16.08■□□□□ 0.17
COL6A3-207ENST00000433762 RNF113AO15541 343 aaKnown RBP16.08■□□□□ 0.16
COL6A3-207ENST00000433762 TRIM28Q13263 835 aaKnown RBP16.08■□□□□ 0.16
COL6A3-207ENST00000433762 DDX46Q7L014 1031 aaKnown RBP16.08■□□□□ 0.16
COL6A3-207ENST00000433762 PGBD1Q96JS3 809 aa16.08■□□□□ 0.16
COL6A3-207ENST00000433762 ZNF396Q96N95 335 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-207ENST00000433762 TTC12Q9H892 705 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-207ENST00000433762 AP5Z1O43299 807 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 JAK2O60674 1132 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 STOX1Q6ZVD7 989 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 DDX17Q92841 729 aaKnown RBP16.07■□□□□ 0.16
COL6A3-207ENST00000433762 CTNNA3Q9UI47 895 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 WDR19Q8NEZ3 1342 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 ABCA3Q99758 1704 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 STK3Q13188 491 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 PLA2G4DQ86XP0 818 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 PLA2G12BQ9BX93 195 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 CBX8Q9HC52 389 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 AKAP2Q9Y2D5 859 aa16.07■□□□□ 0.16
COL6A3-207ENST00000433762 ADD1P35611 737 aaKnown RBP16.06■□□□□ 0.16
COL6A3-207ENST00000433762 SARM1Q6SZW1 724 aa16.06■□□□□ 0.16
COL6A3-207ENST00000433762 CCDC129Q6ZRS4 1044 aa16.06■□□□□ 0.16
COL6A3-207ENST00000433762 BRINP3Q76B58 766 aa16.06■□□□□ 0.16
COL6A3-207ENST00000433762 ZCRB1Q8TBF4 217 aaKnown RBP16.06■□□□□ 0.16
COL6A3-207ENST00000433762 BICD2Q8TD16 824 aa16.06■□□□□ 0.16
COL6A3-207ENST00000433762 SEC62Q99442 399 aaKnown RBP16.06■□□□□ 0.16
COL6A3-207ENST00000433762 HSPD1P10809 573 aaKnown RBP16.06■□□□□ 0.16
COL6A3-207ENST00000433762 FGD1P98174 961 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms