RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RBL2Q08999 1139 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 TRIP4Q15650 581 aaPredicted RBP6.07□□□□□ -1.44
HMGB3-203ENST00000430118 ERMP1Q7Z2K6 904 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 NLRP8Q86W28 1048 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 RNF217Q8TC41 542 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 HSH2DQ96JZ2 352 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 HIRIP3Q9BW71 556 aaPredicted RBP6.07□□□□□ -1.44
HMGB3-203ENST00000430118 SUV39H2Q9H5I1 410 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 SRA1Q9HD15 236 aaKnown RBP6.07□□□□□ -1.44
HMGB3-203ENST00000430118 PPP4R2Q9NY27 417 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 FOXD3Q9UJU5 478 aaPredicted RBP6.07□□□□□ -1.44
HMGB3-203ENST00000430118 TRAK1Q9UPV9 953 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 ABCC2Q92887 1545 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 USP17L7P0C7H9 530 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 GSTT1P30711 240 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 KCNQ4P56696 695 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 PWP1Q13610 501 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 LBRQ14739 615 aaKnown RBP6.06□□□□□ -1.44
HMGB3-203ENST00000430118 DPH6Q7L8W6 267 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 NLRP13Q86W25 1043 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 CMTR1Q8N1G2 835 aaKnown RBP6.06□□□□□ -1.44
HMGB3-203ENST00000430118 EFCC1Q9HA90 598 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 TIMMDC1Q9NPL8 285 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 ABI2Q9NYB9 513 aaPredicted RBP6.06□□□□□ -1.44
HMGB3-203ENST00000430118 GGT7Q9UJ14 662 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 PPM1HQ9ULR3 514 aa6.06□□□□□ -1.44
HMGB3-203ENST00000430118 TNFRSF10AO00220 468 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 CAPN5O15484 640 aaPredicted RBP6.05□□□□□ -1.44
HMGB3-203ENST00000430118 XYLBO75191 536 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 RLBP1P12271 317 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 XRCC5P13010 732 aaKnown RBP6.05□□□□□ -1.44
HMGB3-203ENST00000430118 CTSOP43234 321 aaPredicted RBP6.05□□□□□ -1.44
HMGB3-203ENST00000430118 RACK1P63244 317 aaKnown RBP6.05□□□□□ -1.44
HMGB3-203ENST00000430118 ARSJQ5FYB0 599 aaPredicted RBP6.05□□□□□ -1.44
HMGB3-203ENST00000430118 KIAA0319Q5VV43 1072 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 PRPF40BQ6NWY9 871 aaKnown RBP6.05□□□□□ -1.44
HMGB3-203ENST00000430118 RASGRP4Q8TDF6 673 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 EPS8L3Q8TE67 593 aaKnown RBP6.05□□□□□ -1.44
HMGB3-203ENST00000430118 BCO2Q9BYV7 579 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 CHRDQ9H2X0 955 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 ZFYVE1Q9HBF4 777 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 NPHS2Q9NP85 383 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 TMEM63CQ9P1W3 806 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 CARMIL2Q6F5E8 1435 aa6.05□□□□□ -1.44
HMGB3-203ENST00000430118 KIAA0586Q9BVV6 1533 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 BIVM-ERCC5R4GMW8 1640 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 A0A1W2PNR3 127 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 FAM187AA6NFU0 413 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 EDN3P14138 238 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 MSX1P28360 303 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 DNAJA1P31689 397 aaKnown RBP6.04□□□□□ -1.44
HMGB3-203ENST00000430118 PHKA2P46019 1235 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 POU4F2Q12837 409 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 ZNF394Q53GI3 561 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 USPL1Q5W0Q7 1092 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 LRRC69Q6ZNQ3 347 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 RSRP1Q9BUV0 290 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 DYRK1BQ9Y463 629 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 GJA3Q9Y6H8 435 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 ASXL2Q76L83 1435 aa6.04□□□□□ -1.44
HMGB3-203ENST00000430118 PPRC1Q5VV67 1664 aaKnown RBP6.04□□□□□ -1.44
HMGB3-203ENST00000430118 MAP3K4Q9Y6R4 1608 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 SMARCA5O60264 1052 aaPredicted RBP6.03□□□□□ -1.44
HMGB3-203ENST00000430118 FGRP09769 529 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 NCLP19338 710 aaKnown RBP6.03□□□□□ -1.44
HMGB3-203ENST00000430118 IRS1P35568 1242 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 TNNI2P48788 182 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 NBPF6Q5VWK0 638 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 HPS1Q92902 700 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 ZNF775Q96BV0 537 aaPredicted RBP6.03□□□□□ -1.44
HMGB3-203ENST00000430118 SEC16BQ96JE7 1060 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 NBPF4Q96M43 638 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 CEP63Q96MT8 703 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 LNPKQ9C0E8 428 aa6.03□□□□□ -1.44
HMGB3-203ENST00000430118 PTPRGP23470 1445 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 GADD45BO75293 160 aaPredicted RBP6.02□□□□□ -1.45
HMGB3-203ENST00000430118 FAM157BP0CG42 384 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 BMP2P12643 396 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 HOXD8P13378 290 aaPredicted RBP6.02□□□□□ -1.45
HMGB3-203ENST00000430118 ATF4P18848 351 aaPredicted RBP6.02□□□□□ -1.45
HMGB3-203ENST00000430118 CES1P23141 567 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 GRNP28799 593 aaKnown RBP6.02□□□□□ -1.45
HMGB3-203ENST00000430118 GTF2F1P35269 517 aaKnown RBP eCLIP6.02□□□□□ -1.45
HMGB3-203ENST00000430118 LAMC2Q13753 1193 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 GRM2Q14416 872 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 MEI1Q5TIA1 1274 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 TTC39BQ5VTQ0 682 aaPredicted RBP6.02□□□□□ -1.45
HMGB3-203ENST00000430118 MRPL14Q6P1L8 145 aaKnown RBP6.02□□□□□ -1.45
HMGB3-203ENST00000430118 FIGNL1Q6PIW4 674 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 NXPE4Q6UWF7 544 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 PI16Q6UXB8 463 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 PRICKLE2Q7Z3G6 844 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 PGBD3Q8N328 593 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 GPRASP2Q96D09 838 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 BRD7Q9NPI1 651 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 PCDHGB7Q9Y5F8 929 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 DISP3Q9P2K9 1392 aa6.02□□□□□ -1.45
HMGB3-203ENST00000430118 CUL7Q14999 1698 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 TTLL8A6PVC2 850 aa6.01□□□□□ -1.45
HMGB3-203ENST00000430118 EREGO14944 169 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms