RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 PPIP5K2O43314 1243 aa11.26□□□□□ -0.61
HDAC1-202ENST00000428704 FBXO46Q6PJ61 603 aaPredicted RBP11.26□□□□□ -0.61
HDAC1-202ENST00000428704 BCL2L13Q9BXK5 485 aa11.26□□□□□ -0.61
HDAC1-202ENST00000428704 GBA2Q9HCG7 927 aaPredicted RBP11.26□□□□□ -0.61
HDAC1-202ENST00000428704 ZNF652Q9Y2D9 606 aa11.26□□□□□ -0.61
HDAC1-202ENST00000428704 HTATSF1O43719 755 aaKnown RBP11.25□□□□□ -0.61
HDAC1-202ENST00000428704 A1BGP04217 495 aa11.25□□□□□ -0.61
HDAC1-202ENST00000428704 SLC10A3P09131 477 aa11.25□□□□□ -0.61
HDAC1-202ENST00000428704 GTF2E1P29083 439 aaPredicted RBP11.25□□□□□ -0.61
HDAC1-202ENST00000428704 HIRAP54198 1017 aaPredicted RBP11.25□□□□□ -0.61
HDAC1-202ENST00000428704 GRIPAP1Q4V328 841 aa11.25□□□□□ -0.61
HDAC1-202ENST00000428704 TRPM4Q8TD43 1214 aa11.25□□□□□ -0.61
HDAC1-202ENST00000428704 ZNF296Q8WUU4 475 aaPredicted RBP11.25□□□□□ -0.61
HDAC1-202ENST00000428704 MKI67P46013 3256 aaKnown RBP11.25□□□□□ -0.61
HDAC1-202ENST00000428704 BTBD11A6QL63 1104 aa11.24□□□□□ -0.61
HDAC1-202ENST00000428704 CXCL9Q07325 125 aa11.24□□□□□ -0.61
HDAC1-202ENST00000428704 NFE2L2Q16236 605 aa11.24□□□□□ -0.61
HDAC1-202ENST00000428704 AOC3Q16853 763 aa11.24□□□□□ -0.61
HDAC1-202ENST00000428704 CLEC4GQ6UXB4 293 aa11.24□□□□□ -0.61
HDAC1-202ENST00000428704 DLK2Q6UY11 383 aa11.24□□□□□ -0.61
HDAC1-202ENST00000428704 NIP7Q9Y221 180 aaKnown RBP eCLIP11.24□□□□□ -0.61
HDAC1-202ENST00000428704 CDHR2Q9BYE9 1310 aa11.24□□□□□ -0.61
HDAC1-202ENST00000428704 TCERG1O14776 1098 aaKnown RBP11.23□□□□□ -0.61
HDAC1-202ENST00000428704 KRT26Q7Z3Y9 468 aa11.23□□□□□ -0.61
HDAC1-202ENST00000428704 NGEFQ8N5V2 710 aa11.23□□□□□ -0.61
HDAC1-202ENST00000428704 RTF1Q92541 710 aaKnown RBP11.23□□□□□ -0.61
HDAC1-202ENST00000428704 FMNL2Q96PY5 1086 aa11.23□□□□□ -0.61
HDAC1-202ENST00000428704 THUMPD2Q9BTF0 503 aaKnown RBP11.23□□□□□ -0.61
HDAC1-202ENST00000428704 ZNRF3Q9ULT6 936 aa11.23□□□□□ -0.61
HDAC1-202ENST00000428704 PRAMEF22A3QJZ6 481 aa11.22□□□□□ -0.61
HDAC1-202ENST00000428704 H7C1D1 291 aa11.22□□□□□ -0.61
HDAC1-202ENST00000428704 TBC1D8O95759 1140 aa11.22□□□□□ -0.61
HDAC1-202ENST00000428704 RPGRQ92834 1020 aaKnown RBP11.22□□□□□ -0.61
HDAC1-202ENST00000428704 TMX4Q9H1E5 349 aaPredicted RBP11.22□□□□□ -0.61
HDAC1-202ENST00000428704 MAPK8IP3Q9UPT6 1336 aa11.22□□□□□ -0.61
HDAC1-202ENST00000428704 PPEF1O14829 653 aaPredicted RBP11.21□□□□□ -0.61
HDAC1-202ENST00000428704 CRY2Q49AN0 593 aa11.21□□□□□ -0.61
HDAC1-202ENST00000428704 CNOT7Q9UIV1 285 aaKnown RBP11.21□□□□□ -0.61
HDAC1-202ENST00000428704 ADM5C9JUS6 153 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 PPP1R37O75864 691 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 RAD17O75943 681 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 NEFMP07197 916 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 PIP4K2AP48426 406 aaPredicted RBP11.2□□□□□ -0.62
HDAC1-202ENST00000428704 PLCB2Q00722 1185 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 TNIP1Q15025 636 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 TAF7Q15545 349 aaPredicted RBP11.2□□□□□ -0.62
HDAC1-202ENST00000428704 SLC51AQ86UW1 340 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 CCDC146Q8IYE0 955 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 VPS33BQ9H267 617 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 MIS18AQ9NYP9 233 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 ADAMTS8Q9UP79 889 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 USP16Q9Y5T5 823 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 A0A0C4DFX4 3053 aa11.2□□□□□ -0.62
HDAC1-202ENST00000428704 SZT2Q5T011 3432 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 SHTN1A0MZ66 631 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 POTEB2H3BUK9 544 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 GPR25O00155 361 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 TMPOP42166 694 aaKnown RBP11.19□□□□□ -0.62
HDAC1-202ENST00000428704 INTS3Q68E01 1043 aaKnown RBP11.19□□□□□ -0.62
HDAC1-202ENST00000428704 RASAL3Q86YV0 1011 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 MICALL2Q8IY33 904 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 SUPT20HQ8NEM7 779 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 DCPSQ96C86 337 aaKnown RBP11.19□□□□□ -0.62
HDAC1-202ENST00000428704 PNNQ9H307 717 aaKnown RBP11.19□□□□□ -0.62
HDAC1-202ENST00000428704 PPP4R2Q9NY27 417 aa11.19□□□□□ -0.62
HDAC1-202ENST00000428704 ABCC12Q96J65 1359 aa11.18□□□□□ -0.62
HDAC1-202ENST00000428704 SNRPA1P09661 255 aaKnown RBP11.18□□□□□ -0.62
HDAC1-202ENST00000428704 TBC1D10BQ4KMP7 808 aaPredicted RBP11.18□□□□□ -0.62
HDAC1-202ENST00000428704 RBM17Q96I25 401 aaKnown RBP11.18□□□□□ -0.62
HDAC1-202ENST00000428704 RRP7AQ9Y3A4 280 aaKnown RBP11.18□□□□□ -0.62
HDAC1-202ENST00000428704 BOLA1Q9Y3E2 137 aa11.18□□□□□ -0.62
HDAC1-202ENST00000428704 CUL9Q8IWT3 2517 aa11.18□□□□□ -0.62
HDAC1-202ENST00000428704 NBPF26B4DH59 902 aa11.17□□□□□ -0.62
HDAC1-202ENST00000428704 FKTNO75072 461 aa11.17□□□□□ -0.62
HDAC1-202ENST00000428704 HOXA10P31260 410 aaPredicted RBP11.17□□□□□ -0.62
HDAC1-202ENST00000428704 RIPK4P57078 832 aa11.17□□□□□ -0.62
HDAC1-202ENST00000428704 WDR43Q15061 677 aaKnown RBP eCLIP11.17□□□□□ -0.62
HDAC1-202ENST00000428704 NBPF10Q6P3W6 841 aaKnown RBP11.17□□□□□ -0.62
HDAC1-202ENST00000428704 SAMD7Q7Z3H4 446 aa11.17□□□□□ -0.62
HDAC1-202ENST00000428704 NUTM1Q86Y26 1132 aa11.17□□□□□ -0.62
HDAC1-202ENST00000428704 RUNDC1Q96C34 613 aa11.17□□□□□ -0.62
HDAC1-202ENST00000428704 NYXQ9GZU5 481 aa11.17□□□□□ -0.62
HDAC1-202ENST00000428704 NUP98P52948 1817 aa11.16□□□□□ -0.62
HDAC1-202ENST00000428704 ZNF521Q96K83 1311 aa11.16□□□□□ -0.62
HDAC1-202ENST00000428704 EIF4A1P60842 406 aaKnown RBP11.16□□□□□ -0.62
HDAC1-202ENST00000428704 NOM1Q5C9Z4 860 aaKnown RBP11.16□□□□□ -0.62
HDAC1-202ENST00000428704 SULF1Q8IWU6 871 aa11.16□□□□□ -0.62
HDAC1-202ENST00000428704 CRAMP1Q96RY5 1269 aa11.16□□□□□ -0.62
HDAC1-202ENST00000428704 G3V3G9 751 aa11.15□□□□□ -0.62
HDAC1-202ENST00000428704 EN2P19622 333 aaPredicted RBP11.15□□□□□ -0.62
HDAC1-202ENST00000428704 RBM26Q5T8P6 1007 aaKnown RBP11.15□□□□□ -0.62
HDAC1-202ENST00000428704 DPP8Q6V1X1 898 aaPredicted RBP11.15□□□□□ -0.62
HDAC1-202ENST00000428704 CDCA5Q96FF9 252 aa11.15□□□□□ -0.62
HDAC1-202ENST00000428704 TMEM121BQ9BXQ6 578 aaPredicted RBP11.15□□□□□ -0.62
HDAC1-202ENST00000428704 AKAP11Q9UKA4 1901 aa11.15□□□□□ -0.62
HDAC1-202ENST00000428704 ANKRD36CQ5JPF3 1778 aa11.14□□□□□ -0.63
HDAC1-202ENST00000428704 KIAA2012Q0VF49 1180 aa11.14□□□□□ -0.63
HDAC1-202ENST00000428704 HLFQ16534 295 aa11.14□□□□□ -0.63
HDAC1-202ENST00000428704 DPF2Q92785 391 aa11.14□□□□□ -0.63
HDAC1-202ENST00000428704 ATP6V0A2Q9Y487 856 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms