RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 H7C1W4 665 aa23.49■■□□□ 1.35
PSPC1-202ENST00000427943 DOK7Q18PE1 504 aa23.49■■□□□ 1.35
PSPC1-202ENST00000427943 USP50Q70EL3 339 aaPredicted RBP23.49■■□□□ 1.35
PSPC1-202ENST00000427943 GREM2Q9H772 168 aa23.49■■□□□ 1.35
PSPC1-202ENST00000427943 ADARB2Q9NS39 739 aaKnown RBP23.49■■□□□ 1.35
PSPC1-202ENST00000427943 PODXL2Q9NZ53 605 aa23.49■■□□□ 1.35
PSPC1-202ENST00000427943 A0A1B0GUL6 1792 aa23.48■■□□□ 1.35
PSPC1-202ENST00000427943 F6X3S4 739 aa23.48■■□□□ 1.35
PSPC1-202ENST00000427943 ECE2O60344 883 aa23.48■■□□□ 1.35
PSPC1-202ENST00000427943 LINS1Q8NG48 757 aa23.48■■□□□ 1.35
PSPC1-202ENST00000427943 CDC5LQ99459 802 aaKnown RBP23.48■■□□□ 1.35
PSPC1-202ENST00000427943 SHTN1A0MZ66 631 aa23.47■■□□□ 1.35
PSPC1-202ENST00000427943 TMEM88BA6NKF7 163 aa23.47■■□□□ 1.35
PSPC1-202ENST00000427943 GGA1Q9UJY5 639 aa23.47■■□□□ 1.35
PSPC1-202ENST00000427943 ZBTB12Q9Y330 459 aaPredicted RBP23.47■■□□□ 1.35
PSPC1-202ENST00000427943 PCNTO95613 3336 aa23.47■■□□□ 1.35
PSPC1-202ENST00000427943 PSMD14O00487 310 aa23.46■■□□□ 1.35
PSPC1-202ENST00000427943 CASP7P55210 303 aa23.46■■□□□ 1.35
PSPC1-202ENST00000427943 RTL9Q8NET4 1388 aa23.46■■□□□ 1.35
PSPC1-202ENST00000427943 ZC3H12CQ9C0D7 883 aaKnown RBP23.46■■□□□ 1.35
PSPC1-202ENST00000427943 XDHP47989 1333 aa23.45■■□□□ 1.34
PSPC1-202ENST00000427943 FMR1Q06787 632 aaKnown RBP eCLIP23.45■■□□□ 1.34
PSPC1-202ENST00000427943 KCNQ5Q9NR82 932 aa23.45■■□□□ 1.34
PSPC1-202ENST00000427943 CNTNAP1P78357 1384 aa23.44■■□□□ 1.34
PSPC1-202ENST00000427943 FAM161AQ3B820 660 aa23.44■■□□□ 1.34
PSPC1-202ENST00000427943 TRPM4Q8TD43 1214 aa23.44■■□□□ 1.34
PSPC1-202ENST00000427943 ZNF646O15015 1829 aaPredicted RBP23.44■■□□□ 1.34
PSPC1-202ENST00000427943 POLR2AP24928 1970 aaKnown RBP23.43■■□□□ 1.34
PSPC1-202ENST00000427943 G3V3G9 751 aa23.43■■□□□ 1.34
PSPC1-202ENST00000427943 DCAF8Q5TAQ9 597 aa23.43■■□□□ 1.34
PSPC1-202ENST00000427943 MICALL2Q8IY33 904 aa23.43■■□□□ 1.34
PSPC1-202ENST00000427943 PLA2G12BQ9BX93 195 aa23.43■■□□□ 1.34
PSPC1-202ENST00000427943 CNOT7Q9UIV1 285 aaKnown RBP23.43■■□□□ 1.34
PSPC1-202ENST00000427943 TRAF5O00463 557 aa23.42■■□□□ 1.34
PSPC1-202ENST00000427943 BEND3Q5T5X7 828 aa23.42■■□□□ 1.34
PSPC1-202ENST00000427943 BSDC1Q9NW68 430 aaPredicted RBP23.42■■□□□ 1.34
PSPC1-202ENST00000427943 WTIPA6NIX2 430 aaPredicted RBP23.41■■□□□ 1.34
PSPC1-202ENST00000427943 ITGA6P23229 1130 aa23.41■■□□□ 1.34
PSPC1-202ENST00000427943 ATP2B4P23634 1241 aa23.41■■□□□ 1.34
PSPC1-202ENST00000427943 HIRAP54198 1017 aaPredicted RBP23.41■■□□□ 1.34
PSPC1-202ENST00000427943 MINPP1Q9UNW1 487 aa23.41■■□□□ 1.34
PSPC1-202ENST00000427943 H7C1D1 291 aa23.4■■□□□ 1.34
PSPC1-202ENST00000427943 HSPA1AP0DMV8 641 aaKnown RBP23.4■■□□□ 1.34
PSPC1-202ENST00000427943 HSPA1BP0DMV9 641 aaKnown RBP23.4■■□□□ 1.34
PSPC1-202ENST00000427943 IGHMBP2P38935 993 aaKnown RBP23.4■■□□□ 1.34
PSPC1-202ENST00000427943 ABT1Q9ULW3 272 aaKnown RBP23.39■■□□□ 1.33
PSPC1-202ENST00000427943 CSF1RP07333 972 aa23.38■■□□□ 1.33
PSPC1-202ENST00000427943 SLC4A10Q6U841 1118 aa23.38■■□□□ 1.33
PSPC1-202ENST00000427943 SAMD7Q7Z3H4 446 aa23.38■■□□□ 1.33
PSPC1-202ENST00000427943 DPF2Q92785 391 aa23.38■■□□□ 1.33
PSPC1-202ENST00000427943 GLIS2Q9BZE0 524 aaPredicted RBP23.38■■□□□ 1.33
PSPC1-202ENST00000427943 MED23Q9ULK4 1368 aa23.38■■□□□ 1.33
PSPC1-202ENST00000427943 E9PSI1 815 aa23.37■■□□□ 1.33
PSPC1-202ENST00000427943 EGFRP00533 1210 aa23.37■■□□□ 1.33
PSPC1-202ENST00000427943 RPS12P25398 132 aaKnown RBP23.37■■□□□ 1.33
PSPC1-202ENST00000427943 VEGFBP49765 207 aa23.37■■□□□ 1.33
PSPC1-202ENST00000427943 CCT4P50991 539 aaKnown RBP23.37■■□□□ 1.33
PSPC1-202ENST00000427943 TBC1D10BQ4KMP7 808 aaPredicted RBP23.37■■□□□ 1.33
PSPC1-202ENST00000427943 FOXO4P98177 505 aa23.36■■□□□ 1.33
PSPC1-202ENST00000427943 MPHOSPH8Q99549 860 aa23.36■■□□□ 1.33
PSPC1-202ENST00000427943 CHMP3Q9Y3E7 222 aa23.36■■□□□ 1.33
PSPC1-202ENST00000427943 GRM8O00222 908 aa23.35■■□□□ 1.33
PSPC1-202ENST00000427943 VIL1P09327 827 aaKnown RBP23.35■■□□□ 1.33
PSPC1-202ENST00000427943 PGAP2Q9UHJ9 254 aa23.35■■□□□ 1.33
PSPC1-202ENST00000427943 ANKRD18BA2A2Z9 1011 aa23.34■■□□□ 1.33
PSPC1-202ENST00000427943 RASSF10A6NK89 507 aa23.34■■□□□ 1.33
PSPC1-202ENST00000427943 SLFN5Q08AF3 891 aa23.34■■□□□ 1.33
PSPC1-202ENST00000427943 DEFB115Q30KQ5 88 aa23.34■■□□□ 1.33
PSPC1-202ENST00000427943 EPHA10Q5JZY3 1008 aa23.34■■□□□ 1.33
PSPC1-202ENST00000427943 RBM26Q5T8P6 1007 aaKnown RBP23.34■■□□□ 1.33
PSPC1-202ENST00000427943 CST9Q5W186 159 aa23.34■■□□□ 1.33
PSPC1-202ENST00000427943 MRPL50Q8N5N7 158 aaKnown RBP23.34■■□□□ 1.33
PSPC1-202ENST00000427943 ZC3H15Q8WU90 426 aaKnown RBP23.34■■□□□ 1.33
PSPC1-202ENST00000427943 CDCA7LQ96GN5 454 aa23.34■■□□□ 1.33
PSPC1-202ENST00000427943 THSD7BQ9C0I4 1608 aa23.33■■□□□ 1.33
PSPC1-202ENST00000427943 SRCIN1Q9C0H9 1055 aa23.33■■□□□ 1.33
PSPC1-202ENST00000427943 C9orf78Q9NZ63 289 aaPredicted RBP23.33■■□□□ 1.33
PSPC1-202ENST00000427943 ZNF609O15014 1411 aa23.33■■□□□ 1.32
PSPC1-202ENST00000427943 CCER2I3L3R5 266 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 ALDH1L1O75891 902 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 KLRK1P26718 216 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 KIF4BQ2VIQ3 1234 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 RSBN1LQ6PCB5 846 aaPredicted RBP23.32■■□□□ 1.32
PSPC1-202ENST00000427943 LMBR1LQ6UX01 489 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 TXNRD3Q86VQ6 643 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 ZNF408Q9H9D4 720 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 LEMD3Q9Y2U8 911 aa23.32■■□□□ 1.32
PSPC1-202ENST00000427943 CELF2O95319 508 aaKnown RBP23.31■■□□□ 1.32
PSPC1-202ENST00000427943 CHRNDQ07001 517 aa23.31■■□□□ 1.32
PSPC1-202ENST00000427943 IFIT5Q13325 482 aaKnown RBP23.31■■□□□ 1.32
PSPC1-202ENST00000427943 PAXIP1Q6ZW49 1069 aaPredicted RBP23.31■■□□□ 1.32
PSPC1-202ENST00000427943 PODNQ7Z5L7 613 aa23.31■■□□□ 1.32
PSPC1-202ENST00000427943 ANKRD2Q9GZV1 360 aa23.31■■□□□ 1.32
PSPC1-202ENST00000427943 ZNF804BA4D1E1 1349 aa23.31■■□□□ 1.32
PSPC1-202ENST00000427943 USP17L3A6NCW0 530 aa23.3■■□□□ 1.32
PSPC1-202ENST00000427943 USP17L4A6NCW7 530 aa23.3■■□□□ 1.32
PSPC1-202ENST00000427943 COL13A1Q5TAT6 717 aaPredicted RBP23.3■■□□□ 1.32
PSPC1-202ENST00000427943 IFFO2Q5TF58 517 aa23.3■■□□□ 1.32
PSPC1-202ENST00000427943 DLK2Q6UY11 383 aa23.3■■□□□ 1.32
PSPC1-202ENST00000427943 CDC37L1Q7L3B6 337 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms