RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ZSWIM4Q9H7M6 989 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 PTPDC1A2A3K4 754 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 TAF5LO75529 589 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 ANKRD13DQ6ZTN6 518 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 STRN4Q9NRL3 753 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 NEO1Q92859 1461 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 DDX58O95786 925 aaKnown RBP10.17□□□□□ -0.78
USP40-203ENST00000427112 ZSCAN25Q6NSZ9 544 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 IP6K1Q92551 441 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 CCDC94Q9BW85 323 aaPredicted RBP10.17□□□□□ -0.78
USP40-203ENST00000427112 IQSEC3Q9UPP2 1182 aaPredicted RBP10.17□□□□□ -0.78
USP40-203ENST00000427112 SKILP12757 684 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 GNL2Q13823 731 aaKnown RBP10.16□□□□□ -0.78
USP40-203ENST00000427112 RRP12Q5JTH9 1297 aaKnown RBP10.16□□□□□ -0.78
USP40-203ENST00000427112 CCDC73Q6ZRK6 1079 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 PPP6R1Q9UPN7 881 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 KINO60870 393 aaKnown RBP10.16□□□□□ -0.78
USP40-203ENST00000427112 ZNF75DP51815 510 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 SKIDA1Q1XH10 827 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 LRRN4CLQ8ND94 238 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 CCDC112Q8NEF3 446 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 CDC42BPGQ6DT37 1551 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 TAF7LQ5H9L4 462 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 HOMER1Q86YM7 354 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 LINS1Q8NG48 757 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 ZSCAN31Q96LW9 406 aaPredicted RBP10.16□□□□□ -0.78
USP40-203ENST00000427112 FUCA2Q9BTY2 467 aa10.16□□□□□ -0.78
USP40-203ENST00000427112 SH2B1Q9NRF2 756 aaPredicted RBP10.16□□□□□ -0.78
USP40-203ENST00000427112 COL15A1P39059 1388 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 ADAMTS13Q76LX8 1427 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 NEURL1BA8MQ27 555 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 ADORA1P30542 326 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 GCKRQ14397 625 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 TNNI3KQ59H18 835 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 AKAP4Q5JQC9 854 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 TMC6Q7Z403 805 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 MTMR7Q9Y216 660 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 FPGT-TNNI3KV9GXZ4 949 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 hCG_1642624A0A1W2PR95 340 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 ZNF790Q6PG37 636 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 GPIHBP1Q8IV16 184 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 PDILTQ8N807 584 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 ZNF526Q8TF50 670 aaPredicted RBP10.15□□□□□ -0.78
USP40-203ENST00000427112 CGNQ9P2M7 1197 aaKnown RBP10.15□□□□□ -0.78
USP40-203ENST00000427112 TTC21AQ8NDW8 1320 aa10.15□□□□□ -0.78
USP40-203ENST00000427112 MCM5P33992 734 aa10.15□□□□□ -0.79
USP40-203ENST00000427112 STK38Q15208 465 aa10.15□□□□□ -0.79
USP40-203ENST00000427112 ELF2Q15723 593 aa10.15□□□□□ -0.79
USP40-203ENST00000427112 ZNF215Q9UL58 517 aaPredicted RBP10.15□□□□□ -0.79
USP40-203ENST00000427112 CCDC69A6NI79 296 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 PHKBQ93100 1093 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 GTF3C6Q969F1 213 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 ZKSCAN3Q9BRR0 538 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 PRDM4Q9UKN5 801 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 CLIC4Q9Y696 253 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 CPLX1O14810 134 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 FAM89AQ96GI7 184 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 TTC41PQ6P2S7 1318 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 UVSSAQ2YD98 709 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 THEMISQ8N1K5 641 aaPredicted RBP10.14□□□□□ -0.79
USP40-203ENST00000427112 IFNKQ9P0W0 207 aa10.14□□□□□ -0.79
USP40-203ENST00000427112 LETM1O95202 739 aaPredicted RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 IFIT1P09914 478 aaKnown RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 PDCP20941 246 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 CABP4P57796 275 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 HMGN5P82970 282 aaKnown RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 MICU3Q86XE3 530 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 ERC1Q8IUD2 1116 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 SCAND2PQ9GZW5 306 aaPredicted RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 IDH1O75874 414 aaKnown RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 ATP1A3P13637 1013 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 PTPN12Q05209 780 aaKnown RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 NCBP1Q09161 790 aaKnown RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 ZNF827Q17R98 1081 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 DPCR1Q3MIW9 517 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 CEP135Q66GS9 1140 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 PROSER2Q86WR7 435 aaPredicted RBP10.13□□□□□ -0.79
USP40-203ENST00000427112 NKX2-3Q8TAU0 364 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 CLIC6Q96NY7 704 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 NEURL4Q96JN8 1562 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 ANKRD26Q9UPS8 1709 aa10.13□□□□□ -0.79
USP40-203ENST00000427112 RGPD8O14715 1765 aaPredicted RBP10.12□□□□□ -0.79
USP40-203ENST00000427112 POLR3GO15318 223 aaPredicted RBP10.12□□□□□ -0.79
USP40-203ENST00000427112 SYT10Q6XYQ8 523 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 KRT28Q7Z3Y7 464 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 PXDNQ92626 1479 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 CLSTN2Q9H4D0 955 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 KLF18A0A0U1RQI7 1052 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 GOLGA8BA8MQT2 603 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 NDUFA8P51970 172 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 SCARF1Q14162 830 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 DDX21Q9NR30 783 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP40-203ENST00000427112 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.12□□□□□ -0.79
USP40-203ENST00000427112 PDIA6Q15084 440 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 CPLX3Q8WVH0 158 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 SENP2Q9HC62 589 aa10.12□□□□□ -0.79
USP40-203ENST00000427112 M0R2C6 588 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 CTDNEP1O95476 244 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 ADD1P35611 737 aaKnown RBP10.11□□□□□ -0.79
USP40-203ENST00000427112 PTPN14Q15678 1187 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms