RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 IL6STP40189 918 aaPredicted RBP12.76□□□□□ -0.37
CUX1-205ENST00000425244 TCIRG1Q13488 830 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 RBM8AQ9Y5S9 174 aaKnown RBP12.76□□□□□ -0.37
CUX1-205ENST00000425244 TJP1Q07157 1748 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 STX6O43752 255 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 RXRBP28702 533 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 SYAP1Q96A49 352 aaPredicted RBP12.75□□□□□ -0.37
CUX1-205ENST00000425244 BTAF1O14981 1849 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 MYH14Q7Z406 1995 aaKnown RBP12.75□□□□□ -0.37
CUX1-205ENST00000425244 PHF14O94880 888 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 ZSCAN22P10073 491 aaPredicted RBP12.75□□□□□ -0.37
CUX1-205ENST00000425244 BRWD3Q6RI45 1802 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 UTYO14607 1347 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 A0A0D9SFI3 127 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 FIBPO43427 364 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 EIF5P55010 431 aaKnown RBP12.75□□□□□ -0.37
CUX1-205ENST00000425244 ZSCAN30Q86W11 494 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 NECAB1Q8N987 351 aa12.75□□□□□ -0.37
CUX1-205ENST00000425244 EDC3Q96F86 508 aaKnown RBP12.75□□□□□ -0.37
CUX1-205ENST00000425244 GNPATO15228 680 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 MSNP26038 577 aaKnown RBP12.74□□□□□ -0.37
CUX1-205ENST00000425244 CREB3L3Q68CJ9 461 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 GIGYF2Q6Y7W6 1299 aaKnown RBP12.74□□□□□ -0.37
CUX1-205ENST00000425244 FAM196AQ6ZSG2 479 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 FBXO41Q8TF61 875 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 TCEANC2Q96MN5 208 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 GJB2P29033 226 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 VPS53Q5VIR6 699 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 LMBR1LQ6UX01 489 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 BICDL1Q6ZP65 573 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 CCDC191Q8NCU4 936 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 TSPY26PQ9H489 355 aa12.74□□□□□ -0.37
CUX1-205ENST00000425244 VPS37CA5D8V6 355 aaPredicted RBP12.73□□□□□ -0.37
CUX1-205ENST00000425244 RRP9O43818 475 aaKnown RBP12.73□□□□□ -0.37
CUX1-205ENST00000425244 NDUFB9Q9Y6M9 179 aa12.73□□□□□ -0.37
CUX1-205ENST00000425244 HIP1O00291 1037 aa12.73□□□□□ -0.37
CUX1-205ENST00000425244 HSP90AA2PQ14568 343 aaPredicted RBP12.73□□□□□ -0.37
CUX1-205ENST00000425244 NECTIN1Q15223 517 aa12.73□□□□□ -0.37
CUX1-205ENST00000425244 BCL11BQ9C0K0 894 aaPredicted RBP12.73□□□□□ -0.37
CUX1-205ENST00000425244 ZSWIM6Q9HCJ5 1215 aa12.73□□□□□ -0.37
CUX1-205ENST00000425244 F13A1P00488 732 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 COL9A3Q14050 684 aaPredicted RBP12.72□□□□□ -0.37
CUX1-205ENST00000425244 POTEAQ6S8J7 498 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 RGS17Q9UGC6 210 aaPredicted RBP12.72□□□□□ -0.37
CUX1-205ENST00000425244 TRMT112Q9UI30 125 aaKnown RBP12.72□□□□□ -0.37
CUX1-205ENST00000425244 NUP188Q5SRE5 1749 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 SLC27A2O14975 620 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 ME3Q16798 604 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 AMIGO3Q86WK7 504 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 ISCA1Q9BUE6 129 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 LRRC4BQ9NT99 713 aa12.72□□□□□ -0.37
CUX1-205ENST00000425244 TFCP2Q12800 502 aa12.71□□□□□ -0.37
CUX1-205ENST00000425244 COL15A1P39059 1388 aa12.71□□□□□ -0.37
CUX1-205ENST00000425244 SBF2Q86WG5 1849 aa12.71□□□□□ -0.37
CUX1-205ENST00000425244 H7C1W4 665 aa12.71□□□□□ -0.38
CUX1-205ENST00000425244 ZNF589Q86UQ0 364 aaPredicted RBP12.71□□□□□ -0.38
CUX1-205ENST00000425244 NLRP10Q86W26 655 aa12.71□□□□□ -0.38
CUX1-205ENST00000425244 MAP4K1Q92918 833 aa12.71□□□□□ -0.38
CUX1-205ENST00000425244 ZSCAN31Q96LW9 406 aaPredicted RBP12.71□□□□□ -0.38
CUX1-205ENST00000425244 DNAJC2Q99543 621 aaKnown RBP12.71□□□□□ -0.38
CUX1-205ENST00000425244 TM6SF1Q9BZW5 370 aa12.71□□□□□ -0.38
CUX1-205ENST00000425244 SH2B1Q9NRF2 756 aaPredicted RBP12.71□□□□□ -0.38
CUX1-205ENST00000425244 TPCN1Q9ULQ1 816 aa12.71□□□□□ -0.38
CUX1-205ENST00000425244 TAF6LQ9Y6J9 622 aa12.71□□□□□ -0.38
CUX1-205ENST00000425244 NHSQ6T4R5 1651 aa12.71□□□□□ -0.38
CUX1-205ENST00000425244 CASP7P55210 303 aa12.7□□□□□ -0.38
CUX1-205ENST00000425244 SRP68Q9UHB9 627 aaKnown RBP12.7□□□□□ -0.38
CUX1-205ENST00000425244 DBNLQ9UJU6 430 aaKnown RBP12.7□□□□□ -0.38
CUX1-205ENST00000425244 NIP7Q9Y221 180 aaKnown RBP eCLIP12.7□□□□□ -0.382e-10■■■■■ 60.1
CUX1-205ENST00000425244 ATP6V1DQ9Y5K8 247 aa12.7□□□□□ -0.38
CUX1-205ENST00000425244 UBN2Q6ZU65 1347 aa12.7□□□□□ -0.38
CUX1-205ENST00000425244 DNM1Q05193 864 aaKnown RBP12.7□□□□□ -0.38
CUX1-205ENST00000425244 RNF20Q5VTR2 975 aa12.7□□□□□ -0.38
CUX1-205ENST00000425244 BLOC1S2Q6QNY1 142 aa12.7□□□□□ -0.38
CUX1-205ENST00000425244 CAMTA2O94983 1202 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 PSMA5P28066 241 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 ST3GAL1Q11201 340 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 HSP90AB3PQ58FF7 597 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 ZNF594Q96JF6 807 aaPredicted RBP12.69□□□□□ -0.38
CUX1-205ENST00000425244 PDLIM2Q96JY6 352 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 MTMR6Q9Y217 621 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 RTCBQ9Y3I0 505 aaKnown RBP12.69□□□□□ -0.38
CUX1-205ENST00000425244 CHGBP05060 677 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 FOXO4P98177 505 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 PTPN12Q05209 780 aaKnown RBP12.69□□□□□ -0.38
CUX1-205ENST00000425244 STK3Q13188 491 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 TNNI3KQ59H18 835 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 FERMT3Q86UX7 667 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 KCNB2Q92953 911 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 AK7Q96M32 723 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 FPGT-TNNI3KV9GXZ4 949 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 TCHHQ07283 1943 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 SRCAPQ6ZRS2 3230 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 ERVV-1B6SEH8 477 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 APBA3O96018 575 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 PTMAP06454 111 aaKnown RBP12.69□□□□□ -0.38
CUX1-205ENST00000425244 CCDC183Q5T5S1 534 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 USPL1Q5W0Q7 1092 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 ZBTB38Q8NAP3 1195 aaPredicted RBP12.69□□□□□ -0.38
CUX1-205ENST00000425244 COPRSQ9NQ92 184 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms