RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 AKTIPQ9H8T0 292 aa10.5□□□□□ -0.73
LINC01040-201ENST00000425048 SRA1Q9HD15 236 aaKnown RBP10.5□□□□□ -0.73
LINC01040-201ENST00000425048 HYAL3O43820 417 aaPredicted RBP10.49□□□□□ -0.73
LINC01040-201ENST00000425048 FAM69CQ0P6D2 419 aa10.49□□□□□ -0.73
LINC01040-201ENST00000425048 MAP4K3Q8IVH8 894 aa10.49□□□□□ -0.73
LINC01040-201ENST00000425048 ZMIZ1Q9ULJ6 1067 aa10.49□□□□□ -0.73
LINC01040-201ENST00000425048 MUC3BQ9H195 1237 aa10.48□□□□□ -0.73
LINC01040-201ENST00000425048 PRR23CQ6ZRP0 262 aa10.47□□□□□ -0.73
LINC01040-201ENST00000425048 DZIP1LQ8IYY4 767 aaKnown RBP10.47□□□□□ -0.73
LINC01040-201ENST00000425048 UBAP1LF5GYI3 381 aa10.46□□□□□ -0.73
LINC01040-201ENST00000425048 PTCD1O75127 700 aaKnown RBP10.46□□□□□ -0.73
LINC01040-201ENST00000425048 SLC51AQ86UW1 340 aa10.46□□□□□ -0.73
LINC01040-201ENST00000425048 STK32AQ8WU08 396 aa10.46□□□□□ -0.73
LINC01040-201ENST00000425048 FNDC3AQ9Y2H6 1198 aaKnown RBP10.46□□□□□ -0.73
LINC01040-201ENST00000425048 ALX3O95076 343 aa10.45□□□□□ -0.74
LINC01040-201ENST00000425048 SRPK2P78362 688 aaKnown RBP10.45□□□□□ -0.74
LINC01040-201ENST00000425048 NAA30Q147X3 362 aaPredicted RBP10.45□□□□□ -0.74
LINC01040-201ENST00000425048 SETDB1Q15047 1291 aa10.45□□□□□ -0.74
LINC01040-201ENST00000425048 TRIP4Q15650 581 aaPredicted RBP10.45□□□□□ -0.74
LINC01040-201ENST00000425048 CXXC1Q9P0U4 656 aaPredicted RBP10.45□□□□□ -0.74
LINC01040-201ENST00000425048 RNF112Q9ULX5 631 aa10.45□□□□□ -0.74
LINC01040-201ENST00000425048 TRIM33Q9UPN9 1127 aa10.45□□□□□ -0.74
LINC01040-201ENST00000425048 PPME1Q9Y570 386 aa10.45□□□□□ -0.74
LINC01040-201ENST00000425048 F8W735 103 aaPredicted RBP10.44□□□□□ -0.74
LINC01040-201ENST00000425048 FAM26DQ5JW98 314 aa10.44□□□□□ -0.74
LINC01040-201ENST00000425048 OR13H1Q8NG92 308 aa10.44□□□□□ -0.74
LINC01040-201ENST00000425048 SPACA7Q96KW9 195 aa10.44□□□□□ -0.74
LINC01040-201ENST00000425048 MKNK1Q9BUB5 465 aa10.44□□□□□ -0.74
LINC01040-201ENST00000425048 TNFRSF10BO14763 440 aa10.43□□□□□ -0.74
LINC01040-201ENST00000425048 ATG7O95352 703 aa10.43□□□□□ -0.74
LINC01040-201ENST00000425048 HYAL2Q12891 473 aa10.43□□□□□ -0.74
LINC01040-201ENST00000425048 TTC39BQ5VTQ0 682 aaPredicted RBP10.43□□□□□ -0.74
LINC01040-201ENST00000425048 CAPN12Q6ZSI9 719 aa10.43□□□□□ -0.74
LINC01040-201ENST00000425048 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.42□□□□□ -0.74
LINC01040-201ENST00000425048 ZAP70P43403 619 aa10.42□□□□□ -0.74
LINC01040-201ENST00000425048 STIM2Q9P246 746 aa10.42□□□□□ -0.74
LINC01040-201ENST00000425048 SCNN1AP37088 669 aa10.4□□□□□ -0.74
LINC01040-201ENST00000425048 GPR152Q8TDT2 470 aa10.4□□□□□ -0.74
LINC01040-201ENST00000425048 LINC01387J3KSC0 135 aa10.39□□□□□ -0.75
LINC01040-201ENST00000425048 SMNDC1O75940 238 aaKnown RBP eCLIP10.39□□□□□ -0.75
LINC01040-201ENST00000425048 COL13A1Q5TAT6 717 aaPredicted RBP10.39□□□□□ -0.75
LINC01040-201ENST00000425048 TMEM164Q5U3C3 297 aa10.39□□□□□ -0.75
LINC01040-201ENST00000425048 CEP135Q66GS9 1140 aa10.39□□□□□ -0.75
LINC01040-201ENST00000425048 CLP1Q92989 425 aaKnown RBP10.39□□□□□ -0.75
LINC01040-201ENST00000425048 GLB1P16278 677 aa10.38□□□□□ -0.75
LINC01040-201ENST00000425048 FSTP19883 344 aa10.38□□□□□ -0.75
LINC01040-201ENST00000425048 ABTB2Q8N961 1025 aa10.38□□□□□ -0.75
LINC01040-201ENST00000425048 CDC27P30260 824 aa10.37□□□□□ -0.75
LINC01040-201ENST00000425048 ATP11AP98196 1134 aa10.37□□□□□ -0.75
LINC01040-201ENST00000425048 Q6ZS46 218 aa10.37□□□□□ -0.75
LINC01040-201ENST00000425048 AGGF1Q8N302 714 aaeCLIP10.37□□□□□ -0.75
LINC01040-201ENST00000425048 KRTAP9-2Q9BYQ4 174 aa10.37□□□□□ -0.75
LINC01040-201ENST00000425048 LACRTQ9GZZ8 138 aa10.37□□□□□ -0.75
LINC01040-201ENST00000425048 ABI2Q9NYB9 513 aaPredicted RBP10.37□□□□□ -0.75
LINC01040-201ENST00000425048 ZBTB39O15060 712 aa10.36□□□□□ -0.75
LINC01040-201ENST00000425048 CD68P34810 354 aaPredicted RBP10.36□□□□□ -0.75
LINC01040-201ENST00000425048 GALNT11Q8NCW6 608 aa10.36□□□□□ -0.75
LINC01040-201ENST00000425048 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.35□□□□□ -0.75
LINC01040-201ENST00000425048 KIF4AO95239 1232 aa10.35□□□□□ -0.75
LINC01040-201ENST00000425048 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.35□□□□□ -0.75
LINC01040-201ENST00000425048 RASSF4Q9H2L5 321 aa10.35□□□□□ -0.75
LINC01040-201ENST00000425048 RAXQ9Y2V3 346 aa10.35□□□□□ -0.75
LINC01040-201ENST00000425048 FAM117BQ6P1L5 589 aa10.34□□□□□ -0.75
LINC01040-201ENST00000425048 NCAPG2Q86XI2 1143 aa10.34□□□□□ -0.75
LINC01040-201ENST00000425048 PBX4Q9BYU1 374 aa10.34□□□□□ -0.75
LINC01040-201ENST00000425048 FAM177BA6PVY3 158 aa10.33□□□□□ -0.76
LINC01040-201ENST00000425048 PDE12Q6L8Q7 609 aaKnown RBP10.33□□□□□ -0.76
LINC01040-201ENST00000425048 TXNDC11Q6PKC3 985 aa10.33□□□□□ -0.76
LINC01040-201ENST00000425048 UBL7Q96S82 380 aaPredicted RBP10.33□□□□□ -0.76
LINC01040-201ENST00000425048 ELP3Q9H9T3 547 aa10.33□□□□□ -0.76
LINC01040-201ENST00000425048 STOML1Q9UBI4 398 aa10.33□□□□□ -0.76
LINC01040-201ENST00000425048 FSCN2O14926 492 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 GSC2O15499 205 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 CDC25BP30305 580 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 CEP120Q8N960 986 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 KLHL23Q8NBE8 558 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 PBXIP1Q96AQ6 731 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 CEP41Q9BYV8 373 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 PCMTD2Q9NV79 361 aa10.32□□□□□ -0.76
LINC01040-201ENST00000425048 DHX15O43143 795 aaKnown RBP10.31□□□□□ -0.76
LINC01040-201ENST00000425048 CYP2E1P05181 493 aaPredicted RBP10.31□□□□□ -0.76
LINC01040-201ENST00000425048 RPLP1P05386 114 aaKnown RBP10.31□□□□□ -0.76
LINC01040-201ENST00000425048 ACAD11Q709F0 780 aa10.31□□□□□ -0.76
LINC01040-201ENST00000425048 KRTAP9-6A0A140TA67 174 aa10.3□□□□□ -0.76
LINC01040-201ENST00000425048 PTPRAP18433 802 aa10.3□□□□□ -0.76
LINC01040-201ENST00000425048 ATP2B4P23634 1241 aa10.3□□□□□ -0.76
LINC01040-201ENST00000425048 NUDT16Q96DE0 195 aaKnown RBP10.3□□□□□ -0.76
LINC01040-201ENST00000425048 KCNK4Q9NYG8 393 aa10.3□□□□□ -0.76
LINC01040-201ENST00000425048 WISP1O95388 367 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 IGLV1-40P01703 118 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 SSTR4P31391 388 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 DUOXA2Q1HG44 320 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 ZNF438Q7Z4V0 828 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 POP1Q99575 1024 aaKnown RBP10.29□□□□□ -0.76
LINC01040-201ENST00000425048 CARD10Q9BWT7 1032 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 ADAM19Q9H013 955 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 ZMYND15Q9H091 742 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 SH2B1Q9NRF2 756 aaPredicted RBP10.29□□□□□ -0.76
LINC01040-201ENST00000425048 TMEM63CQ9P1W3 806 aa10.29□□□□□ -0.76
LINC01040-201ENST00000425048 SEPT3Q9UH03 358 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms