RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 WTIPA6NIX2 430 aaPredicted RBP16.74■□□□□ 0.27
VRK3-203ENST00000424804 C6orf229H3BNL8 230 aa16.74■□□□□ 0.27
VRK3-203ENST00000424804 ECE2O60344 883 aa16.74■□□□□ 0.27
VRK3-203ENST00000424804 PDE8AO60658 829 aa16.74■□□□□ 0.27
VRK3-203ENST00000424804 AOC2O75106 756 aa16.74■□□□□ 0.27
VRK3-203ENST00000424804 CELF2O95319 508 aaKnown RBP16.74■□□□□ 0.27
VRK3-203ENST00000424804 MAP2K1Q02750 393 aaPredicted RBP16.74■□□□□ 0.27
VRK3-203ENST00000424804 CCDC27Q2M243 656 aa16.74■□□□□ 0.27
VRK3-203ENST00000424804 FAM9BQ8IZU0 186 aa16.74■□□□□ 0.27
VRK3-203ENST00000424804 TSR2Q969E8 191 aaKnown RBP16.74■□□□□ 0.27
VRK3-203ENST00000424804 PSME4Q14997 1843 aa16.73■□□□□ 0.27
VRK3-203ENST00000424804 VIL1P09327 827 aaKnown RBP16.73■□□□□ 0.27
VRK3-203ENST00000424804 CCDC30Q5VVM6 783 aa16.73■□□□□ 0.27
VRK3-203ENST00000424804 CDC37L1Q7L3B6 337 aa16.73■□□□□ 0.27
VRK3-203ENST00000424804 G2E3Q7L622 706 aa16.73■□□□□ 0.27
VRK3-203ENST00000424804 WWC1Q8IX03 1113 aa16.73■□□□□ 0.27
VRK3-203ENST00000424804 AIDAQ96BJ3 306 aa16.73■□□□□ 0.27
VRK3-203ENST00000424804 CWC25Q9NXE8 425 aaPredicted RBP16.73■□□□□ 0.27
VRK3-203ENST00000424804 MAP3K2Q9Y2U5 619 aa16.73■□□□□ 0.27
VRK3-203ENST00000424804 PI4KAP2A4QPH2 592 aa16.72■□□□□ 0.27
VRK3-203ENST00000424804 H7C1D1 291 aa16.72■□□□□ 0.27
VRK3-203ENST00000424804 KSR2Q6VAB6 950 aa16.72■□□□□ 0.27
VRK3-203ENST00000424804 USP48Q86UV5 1035 aa16.72■□□□□ 0.27
VRK3-203ENST00000424804 PI4KAP1Q8N8J0 262 aa16.72■□□□□ 0.27
VRK3-203ENST00000424804 HHIPL1Q96JK4 782 aa16.72■□□□□ 0.27
VRK3-203ENST00000424804 SALL2Q9Y467 1007 aaPredicted RBP16.72■□□□□ 0.27
VRK3-203ENST00000424804 ZNF646O15015 1829 aaPredicted RBP16.71■□□□□ 0.27
VRK3-203ENST00000424804 ECE1P42892 770 aa16.71■□□□□ 0.27
VRK3-203ENST00000424804 TBC1D10BQ4KMP7 808 aaPredicted RBP16.71■□□□□ 0.27
VRK3-203ENST00000424804 CCDC85AQ96PX6 553 aaPredicted RBP16.71■□□□□ 0.27
VRK3-203ENST00000424804 EYA3Q99504 573 aa16.71■□□□□ 0.27
VRK3-203ENST00000424804 RPS12P25398 132 aaKnown RBP16.7■□□□□ 0.26
VRK3-203ENST00000424804 MAP2K2P36507 400 aa16.7■□□□□ 0.26
VRK3-203ENST00000424804 CCDC152Q4G0S7 254 aa16.7■□□□□ 0.26
VRK3-203ENST00000424804 TTLL11Q8NHH1 800 aa16.7■□□□□ 0.26
VRK3-203ENST00000424804 ZIC5Q96T25 663 aa16.7■□□□□ 0.26
VRK3-203ENST00000424804 GMLQ99445 158 aa16.7■□□□□ 0.26
VRK3-203ENST00000424804 MYH3P11055 1940 aa16.7■□□□□ 0.26
VRK3-203ENST00000424804 ZNF609O15014 1411 aa16.7■□□□□ 0.26
VRK3-203ENST00000424804 ASTN2O75129 1339 aaPredicted RBP16.7■□□□□ 0.26
VRK3-203ENST00000424804 H7C1W4 665 aa16.69■□□□□ 0.26
VRK3-203ENST00000424804 NCBP3Q53F19 620 aaKnown RBP16.69■□□□□ 0.26
VRK3-203ENST00000424804 ZC3H12CQ9C0D7 883 aaKnown RBP16.69■□□□□ 0.26
VRK3-203ENST00000424804 GGA1Q9UJY5 639 aa16.69■□□□□ 0.26
VRK3-203ENST00000424804 NEURL1BA8MQ27 555 aa16.68■□□□□ 0.26
VRK3-203ENST00000424804 UFL1O94874 794 aa16.68■□□□□ 0.26
VRK3-203ENST00000424804 DDX58O95786 925 aaKnown RBP16.68■□□□□ 0.26
VRK3-203ENST00000424804 CASP7P55210 303 aa16.68■□□□□ 0.26
VRK3-203ENST00000424804 CTSWP56202 376 aa16.68■□□□□ 0.26
VRK3-203ENST00000424804 GRM1Q13255 1194 aa16.68■□□□□ 0.26
VRK3-203ENST00000424804 CWF19L2Q2TBE0 894 aaKnown RBP16.68■□□□□ 0.26
VRK3-203ENST00000424804 IL16Q14005 1332 aa16.68■□□□□ 0.26
VRK3-203ENST00000424804 ADM5C9JUS6 153 aa16.67■□□□□ 0.26
VRK3-203ENST00000424804 HSP90B1P14625 803 aaKnown RBP16.67■□□□□ 0.26
VRK3-203ENST00000424804 ZNF280AP59817 542 aaPredicted RBP16.67■□□□□ 0.26
VRK3-203ENST00000424804 TWISTNBQ3B726 338 aaPredicted RBP16.67■□□□□ 0.26
VRK3-203ENST00000424804 RBM26Q5T8P6 1007 aaKnown RBP16.67■□□□□ 0.26
VRK3-203ENST00000424804 PAXIP1Q6ZW49 1069 aaPredicted RBP16.67■□□□□ 0.26
VRK3-203ENST00000424804 GREM2Q9H772 168 aa16.67■□□□□ 0.26
VRK3-203ENST00000424804 ZNF408Q9H9D4 720 aa16.67■□□□□ 0.26
VRK3-203ENST00000424804 ANKIB1Q9P2G1 1089 aa16.67■□□□□ 0.26
VRK3-203ENST00000424804 MINPP1Q9UNW1 487 aa16.67■□□□□ 0.26
VRK3-203ENST00000424804 SPEF2Q9C093 1822 aa16.67■□□□□ 0.26
VRK3-203ENST00000424804 CACNA1FO60840 1977 aa16.66■□□□□ 0.26
VRK3-203ENST00000424804 FAM155AB1AL88 458 aaPredicted RBP16.66■□□□□ 0.26
VRK3-203ENST00000424804 SLC4A2P04920 1241 aa16.66■□□□□ 0.26
VRK3-203ENST00000424804 RSBN1LQ6PCB5 846 aaPredicted RBP16.66■□□□□ 0.26
VRK3-203ENST00000424804 ANKRD18AQ8IVF6 992 aa16.66■□□□□ 0.26
VRK3-203ENST00000424804 CHMP4AQ9BY43 222 aa16.66■□□□□ 0.26
VRK3-203ENST00000424804 BSDC1Q9NW68 430 aaPredicted RBP16.66■□□□□ 0.26
VRK3-203ENST00000424804 TSKSQ9UJT2 592 aa16.66■□□□□ 0.26
VRK3-203ENST00000424804 XDHP47989 1333 aa16.66■□□□□ 0.26
VRK3-203ENST00000424804 CASP8AP2Q9UKL3 1982 aa16.66■□□□□ 0.26
VRK3-203ENST00000424804 VAMP4O75379 141 aa16.65■□□□□ 0.26
VRK3-203ENST00000424804 ATP2B4P23634 1241 aa16.65■□□□□ 0.26
VRK3-203ENST00000424804 KIF4BQ2VIQ3 1234 aa16.65■□□□□ 0.26
VRK3-203ENST00000424804 KRT26Q7Z3Y9 468 aa16.65■□□□□ 0.26
VRK3-203ENST00000424804 BRPF1P55201 1214 aaPredicted RBP16.64■□□□□ 0.25
VRK3-203ENST00000424804 TXNRD3Q86VQ6 643 aa16.64■□□□□ 0.25
VRK3-203ENST00000424804 AGBL3Q8NEM8 1001 aa16.64■□□□□ 0.25
VRK3-203ENST00000424804 PLA2G12BQ9BX93 195 aa16.64■□□□□ 0.25
VRK3-203ENST00000424804 SPINK5Q9NQ38 1064 aaPredicted RBP16.64■□□□□ 0.25
VRK3-203ENST00000424804 CSF1RP07333 972 aa16.63■□□□□ 0.25
VRK3-203ENST00000424804 HUNKP57058 714 aa16.63■□□□□ 0.25
VRK3-203ENST00000424804 GCKRQ14397 625 aa16.63■□□□□ 0.25
VRK3-203ENST00000424804 ABHD8Q96I13 439 aa16.63■□□□□ 0.25
VRK3-203ENST00000424804 GBA2Q9HCG7 927 aaPredicted RBP16.63■□□□□ 0.25
VRK3-203ENST00000424804 FANCIQ9NVI1 1328 aa16.63■□□□□ 0.25
VRK3-203ENST00000424804 FLIIQ13045 1269 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 SCARF1Q14162 830 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 UBE3BQ7Z3V4 1068 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 PODNQ7Z5L7 613 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 DCPSQ96C86 337 aaKnown RBP16.62■□□□□ 0.25
VRK3-203ENST00000424804 CDC5LQ99459 802 aaKnown RBP16.62■□□□□ 0.25
VRK3-203ENST00000424804 MXD3Q9BW11 206 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 STK31Q9BXU1 1019 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 GGA3Q9NZ52 723 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 MED23Q9ULK4 1368 aa16.62■□□□□ 0.25
VRK3-203ENST00000424804 USP17L3A6NCW0 530 aa16.61■□□□□ 0.25
VRK3-203ENST00000424804 USP17L4A6NCW7 530 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms