RNA–Protein interactions for RNA: ENST00000424339.1

EPHA4-206, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 492 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-206ENST00000424339 SIK1P57059 783 aa9.05□□□□□ -0.96
EPHA4-206ENST00000424339 EIF4A1P60842 406 aaKnown RBP9.05□□□□□ -0.96
EPHA4-206ENST00000424339 METTL3Q86U44 580 aaKnown RBP9.05□□□□□ -0.96
EPHA4-206ENST00000424339 TRMT2AQ8IZ69 625 aaKnown RBP9.05□□□□□ -0.96
EPHA4-206ENST00000424339 ERBB4Q15303 1308 aa9.05□□□□□ -0.96
EPHA4-206ENST00000424339 LAMB4A4D0S4 1761 aa9.04□□□□□ -0.96
EPHA4-206ENST00000424339 STARD3NLO95772 234 aa9.04□□□□□ -0.96
EPHA4-206ENST00000424339 SLC39A6Q13433 755 aa9.04□□□□□ -0.96
EPHA4-206ENST00000424339 IRF7Q92985 503 aa9.04□□□□□ -0.96
EPHA4-206ENST00000424339 ZNF496Q96IT1 587 aaPredicted RBP9.04□□□□□ -0.96
EPHA4-206ENST00000424339 REPIN1Q9BWE0 567 aaKnown RBP9.04□□□□□ -0.96
EPHA4-206ENST00000424339 CCNL1Q9UK58 526 aaPredicted RBP9.04□□□□□ -0.96
EPHA4-206ENST00000424339 CACNA1FO60840 1977 aa9.04□□□□□ -0.96
EPHA4-206ENST00000424339 C5P01031 1676 aa9.04□□□□□ -0.96
EPHA4-206ENST00000424339 PTCD1O75127 700 aaKnown RBP9.03□□□□□ -0.96
EPHA4-206ENST00000424339 GIGYF1O75420 1035 aaPredicted RBP9.03□□□□□ -0.96
EPHA4-206ENST00000424339 TXNRD1Q16881 649 aa9.03□□□□□ -0.96
EPHA4-206ENST00000424339 DUSP27Q5VZP5 1158 aa9.03□□□□□ -0.96
EPHA4-206ENST00000424339 ILDR2Q71H61 639 aa9.03□□□□□ -0.96
EPHA4-206ENST00000424339 COL5A3P25940 1745 aaPredicted RBP9.02□□□□□ -0.96
EPHA4-206ENST00000424339 RREB1Q92766 1687 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 GCGRP47871 477 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 TWISTNBQ3B726 338 aaPredicted RBP9.02□□□□□ -0.97
EPHA4-206ENST00000424339 GRIPAP1Q4V328 841 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 MSS51Q4VC12 460 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 RC3H1Q5TC82 1133 aaKnown RBP9.02□□□□□ -0.97
EPHA4-206ENST00000424339 TSR2Q969E8 191 aaKnown RBP9.02□□□□□ -0.97
EPHA4-206ENST00000424339 CAMKK2Q96RR4 588 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 MIS18AQ9NYP9 233 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 TAF1LQ8IZX4 1826 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 CNTNAP4Q9C0A0 1308 aa9.02□□□□□ -0.97
EPHA4-206ENST00000424339 KCNQ3O43525 872 aa9.01□□□□□ -0.97
EPHA4-206ENST00000424339 TJP1Q07157 1748 aa9.01□□□□□ -0.97
EPHA4-206ENST00000424339 CCDC30Q5VVM6 783 aa9.01□□□□□ -0.97
EPHA4-206ENST00000424339 PTF1AQ7RTS3 328 aa9.01□□□□□ -0.97
EPHA4-206ENST00000424339 SENP3-EIF4A1A0A087X0R7 540 aa9□□□□□ -0.97
EPHA4-206ENST00000424339 SOCS7O14512 581 aa9□□□□□ -0.97
EPHA4-206ENST00000424339 EXOSC9Q06265 439 aaKnown RBP9□□□□□ -0.97
EPHA4-206ENST00000424339 ALDH1L2Q3SY69 923 aa9□□□□□ -0.97
EPHA4-206ENST00000424339 HDGFL1Q5TGJ6 251 aa9□□□□□ -0.97
EPHA4-206ENST00000424339 NPM2Q86SE8 214 aaKnown RBP9□□□□□ -0.97
EPHA4-206ENST00000424339 STK31Q9BXU1 1019 aa9□□□□□ -0.97
EPHA4-206ENST00000424339 DBF4Q9UBU7 674 aaPredicted RBP9□□□□□ -0.97
EPHA4-206ENST00000424339 C4BP0C0L5 1744 aa9□□□□□ -0.97
EPHA4-206ENST00000424339 CYP19A1P11511 503 aaPredicted RBP8.99□□□□□ -0.97
EPHA4-206ENST00000424339 NBPF14Q5TI25 921 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 RNF19BQ6ZMZ0 732 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 SULF1Q8IWU6 871 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 DNAJC10Q8IXB1 793 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 NPAS3Q8IXF0 933 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 C8orf58Q8NAV2 365 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 FLAD1Q8NFF5 587 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 SLC4A9Q96Q91 983 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 CCDC87Q9NVE4 849 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 NUP188Q5SRE5 1749 aa8.99□□□□□ -0.97
EPHA4-206ENST00000424339 QSER1Q2KHR3 1735 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 VAMP4O75379 141 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 SSFA2P28290 1259 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 IL6STP40189 918 aaPredicted RBP8.98□□□□□ -0.97
EPHA4-206ENST00000424339 CRKLP46109 303 aaKnown RBP8.98□□□□□ -0.97
EPHA4-206ENST00000424339 ITPK1Q13572 414 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 HIC1Q14526 733 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 SUZ12Q15022 739 aaKnown RBP8.98□□□□□ -0.97
EPHA4-206ENST00000424339 EZH2Q15910 746 aaKnown RBP8.98□□□□□ -0.97
EPHA4-206ENST00000424339 Q3C1V9 767 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 AK7Q96M32 723 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 DDX21Q9NR30 783 aaKnown RBP eCLIP8.98□□□□□ -0.97
EPHA4-206ENST00000424339 LRRC4BQ9NT99 713 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 HYPKQ9NX55 129 aa8.98□□□□□ -0.97
EPHA4-206ENST00000424339 A0A087WZG4 1122 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 RPS6KA4O75676 772 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 ALDH1A1P00352 501 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 LORP23490 312 aaPredicted RBP8.97□□□□□ -0.97
EPHA4-206ENST00000424339 BRPF1P55201 1214 aaPredicted RBP8.97□□□□□ -0.97
EPHA4-206ENST00000424339 DEFB132Q7Z7B7 95 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 CCDC24Q8N4L8 307 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 TSPYL6Q8N831 410 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 LINC00116Q8NCU8 138 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 STK32BQ9NY57 414 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 RTCBQ9Y3I0 505 aaKnown RBP8.97□□□□□ -0.97
EPHA4-206ENST00000424339 USP16Q9Y5T5 823 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 KIF16BQ96L93 1317 aa8.97□□□□□ -0.97
EPHA4-206ENST00000424339 MYH14Q7Z406 1995 aaKnown RBP8.97□□□□□ -0.97
EPHA4-206ENST00000424339 UBR3Q6ZT12 1888 aa8.96□□□□□ -0.97
EPHA4-206ENST00000424339 ELL2O00472 640 aaPredicted RBP8.96□□□□□ -0.98
EPHA4-206ENST00000424339 DDX58O95786 925 aaKnown RBP8.96□□□□□ -0.98
EPHA4-206ENST00000424339 EIF2S2P20042 333 aaKnown RBP8.96□□□□□ -0.98
EPHA4-206ENST00000424339 VEGFBP49765 207 aa8.96□□□□□ -0.98
EPHA4-206ENST00000424339 KRT24Q2M2I5 525 aa8.96□□□□□ -0.98
EPHA4-206ENST00000424339 INTS5Q6P9B9 1019 aaKnown RBP8.96□□□□□ -0.98
EPHA4-206ENST00000424339 SUPT16HQ9Y5B9 1047 aaKnown RBP8.96□□□□□ -0.98
EPHA4-206ENST00000424339 TULP1O00294 542 aaPredicted RBP8.95□□□□□ -0.98
EPHA4-206ENST00000424339 GNPATO15228 680 aa8.95□□□□□ -0.98
EPHA4-206ENST00000424339 MMP16P51512 607 aa8.95□□□□□ -0.98
EPHA4-206ENST00000424339 EIF5P55010 431 aaKnown RBP8.95□□□□□ -0.98
EPHA4-206ENST00000424339 SLC15A2Q16348 729 aa8.95□□□□□ -0.98
EPHA4-206ENST00000424339 KCNV2Q8TDN2 545 aa8.95□□□□□ -0.98
EPHA4-206ENST00000424339 TFCP2L1Q9NZI6 479 aa8.95□□□□□ -0.98
EPHA4-206ENST00000424339 CHPF2Q9P2E5 772 aa8.95□□□□□ -0.98
EPHA4-206ENST00000424339 ZBTB1Q9Y2K1 713 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms