RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CLEC4GQ6UXB4 293 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 ZNF34Q8IZ26 560 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 KAZALD1Q96I82 304 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 ZFP91Q96JP5 570 aaPredicted RBP7.33□□□□□ -1.24
HMGB3-202ENST00000419110 UTP14AQ9BVJ6 771 aaKnown RBP7.33□□□□□ -1.24
HMGB3-202ENST00000419110 NYXQ9GZU5 481 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 BCL11AQ9H165 835 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 UPF2Q9HAU5 1272 aaKnown RBP7.33□□□□□ -1.24
HMGB3-202ENST00000419110 NARFQ9UHQ1 456 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 NIP7Q9Y221 180 aaKnown RBP eCLIP7.33□□□□□ -1.24
HMGB3-202ENST00000419110 NOP58Q9Y2X3 529 aaKnown RBP7.33□□□□□ -1.24
HMGB3-202ENST00000419110 CHD4Q14839 1912 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 ABCC12Q96J65 1359 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 LAMA4Q16363 1823 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 IRS4O14654 1257 aaPredicted RBP7.32□□□□□ -1.24
HMGB3-202ENST00000419110 NPHP1O15259 732 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 SMARCA5O60264 1052 aaPredicted RBP7.32□□□□□ -1.24
HMGB3-202ENST00000419110 NTSR2O95665 410 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 RFC4P35249 363 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 KCNQ4P56696 695 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 TXNRD1Q16881 649 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 CCDC57Q2TAC2 916 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 RTL5Q5HYW3 569 aaPredicted RBP7.32□□□□□ -1.24
HMGB3-202ENST00000419110 EPHA10Q5JZY3 1008 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 TTC22Q5TAA0 569 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 POTEAQ6S8J7 498 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 CASC1Q6TDU7 716 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 LMBR1LQ6UX01 489 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 CLASRPQ8N2M8 674 aaKnown RBP7.32□□□□□ -1.24
HMGB3-202ENST00000419110 RHPN1Q8TCX5 695 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 SIL1Q9H173 461 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 COPRSQ9NQ92 184 aa7.32□□□□□ -1.24
HMGB3-202ENST00000419110 PA2G4Q9UQ80 394 aaKnown RBP7.32□□□□□ -1.24
HMGB3-202ENST00000419110 TTC41PQ6P2S7 1318 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 AKAP11Q9UKA4 1901 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 ERC2O15083 957 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 PLSCR1O15162 318 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 PDE8AO60658 829 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 CDC45O75419 566 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 APBA3O96018 575 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 IFIT2P09913 472 aaKnown RBP7.31□□□□□ -1.24
HMGB3-202ENST00000419110 ANP32AP39687 249 aaKnown RBP7.31□□□□□ -1.24
HMGB3-202ENST00000419110 FOXO4P98177 505 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 IFIT5Q13325 482 aaKnown RBP7.31□□□□□ -1.24
HMGB3-202ENST00000419110 SF3B2Q13435 895 aaKnown RBP7.31□□□□□ -1.24
HMGB3-202ENST00000419110 C8orf34Q49A92 452 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 CCDC152Q4G0S7 254 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 JARID2Q92833 1246 aaPredicted RBP7.31□□□□□ -1.24
HMGB3-202ENST00000419110 FAM89AQ96GI7 184 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 BACH2Q9BYV9 841 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 IL1RAPL2Q9NP60 686 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 RGS17Q9UGC6 210 aaPredicted RBP7.31□□□□□ -1.24
HMGB3-202ENST00000419110 MYO5AQ9Y4I1 1855 aaKnown RBP7.31□□□□□ -1.24
HMGB3-202ENST00000419110 KIF13BQ9NQT8 1826 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 RFX7Q2KHR2 1363 aa7.31□□□□□ -1.24
HMGB3-202ENST00000419110 SALL3Q9BXA9 1300 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.3□□□□□ -1.24
HMGB3-202ENST00000419110 ANKRD18BA2A2Z9 1011 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 FAM177BA6PVY3 158 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 CIAO1O76071 339 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 GTF2E1P29083 439 aaPredicted RBP7.3□□□□□ -1.24
HMGB3-202ENST00000419110 IL15P40933 162 aaPredicted RBP7.3□□□□□ -1.24
HMGB3-202ENST00000419110 BAG6P46379 1132 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 RFX5P48382 616 aaPredicted RBP7.3□□□□□ -1.24
HMGB3-202ENST00000419110 PDE1AP54750 535 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 TRAPPC3LQ5T215 181 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 USPL1Q5W0Q7 1092 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 AACSQ86V21 672 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 NBPF5PQ86XG9 351 aaPredicted RBP7.3□□□□□ -1.24
HMGB3-202ENST00000419110 PLEKHM2Q8IWE5 1019 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 CNBD1Q8NA66 436 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 FLAD1Q8NFF5 587 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 SETDB2Q96T68 719 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 OSBPL3Q9H4L5 887 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 LRRC4BQ9NT99 713 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 SRP68Q9UHB9 627 aaKnown RBP7.3□□□□□ -1.24
HMGB3-202ENST00000419110 LTBP1Q14766 1721 aa7.3□□□□□ -1.24
HMGB3-202ENST00000419110 COL4A1P02462 1669 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 EYA2O00167 538 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 GLRX3O76003 335 aaKnown RBP7.29□□□□□ -1.24
HMGB3-202ENST00000419110 GSPT1P15170 499 aaKnown RBP7.29□□□□□ -1.24
HMGB3-202ENST00000419110 ITGA6P23229 1130 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 EMP3P54852 163 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 ST5P78524 1137 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 PTPN12Q05209 780 aaKnown RBP7.29□□□□□ -1.24
HMGB3-202ENST00000419110 SUSD4Q5VX71 490 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 TBC1D9BQ66K14 1250 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 BICDL1Q6ZP65 573 aa7.29□□□□□ -1.24
HMGB3-202ENST00000419110 OTUD7AQ8TE49 926 aaPredicted RBP7.29□□□□□ -1.24
HMGB3-202ENST00000419110 ARHGEF1Q92888 912 aaKnown RBP7.29□□□□□ -1.24
HMGB3-202ENST00000419110 CDC5LQ99459 802 aaKnown RBP7.29□□□□□ -1.24
HMGB3-202ENST00000419110 LAMB1P07942 1786 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 IGHMBP2P38935 993 aaKnown RBP7.28□□□□□ -1.24
HMGB3-202ENST00000419110 ZNF827Q17R98 1081 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 TNNI3KQ59H18 835 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 NUTM1Q86Y26 1132 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 CNTROBQ8N137 903 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 KLHDC4Q8TBB5 520 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 CCDC85AQ96PX6 553 aaPredicted RBP7.28□□□□□ -1.24
HMGB3-202ENST00000419110 GREM2Q9H772 168 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms