RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 FAM9BQ8IZU0 186 aa23.41■■□□□ 1.34
VCP-202ENST00000417448 ZNF428Q96B54 188 aa23.41■■□□□ 1.34
VCP-202ENST00000417448 CDCA5Q96FF9 252 aa23.41■■□□□ 1.34
VCP-202ENST00000417448 PAPPA2Q9BXP8 1791 aa23.4■■□□□ 1.34
VCP-202ENST00000417448 POLLQ9UGP5 575 aa23.4■■□□□ 1.34
VCP-202ENST00000417448 TRMT112Q9UI30 125 aaKnown RBP23.4■■□□□ 1.34
VCP-202ENST00000417448 SH3TC1Q8TE82 1336 aa23.39■■□□□ 1.34
VCP-202ENST00000417448 APAF1O14727 1248 aa23.39■■□□□ 1.33
VCP-202ENST00000417448 ECE2O60344 883 aa23.39■■□□□ 1.33
VCP-202ENST00000417448 EIF2S2P20042 333 aaKnown RBP23.39■■□□□ 1.33
VCP-202ENST00000417448 DOK7Q18PE1 504 aa23.39■■□□□ 1.33
VCP-202ENST00000417448 TMC4Q7Z404 712 aa23.39■■□□□ 1.33
VCP-202ENST00000417448 SULF1Q8IWU6 871 aa23.39■■□□□ 1.33
VCP-202ENST00000417448 MIER1Q8N108 512 aa23.39■■□□□ 1.33
VCP-202ENST00000417448 CELF1Q92879 486 aaKnown RBP23.39■■□□□ 1.33
VCP-202ENST00000417448 NSFL1CQ9UNZ2 370 aaKnown RBP23.39■■□□□ 1.33
VCP-202ENST00000417448 HTTP42858 3142 aa23.39■■□□□ 1.33
VCP-202ENST00000417448 ZNF296Q8WUU4 475 aaPredicted RBP23.38■■□□□ 1.33
VCP-202ENST00000417448 PSME4Q14997 1843 aa23.38■■□□□ 1.33
VCP-202ENST00000417448 GPSM2P81274 684 aa23.37■■□□□ 1.33
VCP-202ENST00000417448 PKN2Q16513 984 aaKnown RBP23.36■■□□□ 1.33
VCP-202ENST00000417448 HSP90AB3PQ58FF7 597 aa23.36■■□□□ 1.33
VCP-202ENST00000417448 COPS6Q7L5N1 327 aa23.36■■□□□ 1.33
VCP-202ENST00000417448 REM2Q8IYK8 340 aaPredicted RBP23.36■■□□□ 1.33
VCP-202ENST00000417448 C6orf229H3BNL8 230 aa23.35■■□□□ 1.33
VCP-202ENST00000417448 TBC1D8O95759 1140 aa23.35■■□□□ 1.33
VCP-202ENST00000417448 AIMP1Q12904 312 aaKnown RBP23.35■■□□□ 1.33
VCP-202ENST00000417448 TCIRG1Q13488 830 aa23.35■■□□□ 1.33
VCP-202ENST00000417448 XAGE3Q8WTP9 111 aa23.35■■□□□ 1.33
VCP-202ENST00000417448 HDAC9Q9UKV0 1011 aa23.35■■□□□ 1.33
VCP-202ENST00000417448 TRIM35Q9UPQ4 493 aa23.35■■□□□ 1.33
VCP-202ENST00000417448 CENPFP49454 3210 aa23.35■■□□□ 1.33
VCP-202ENST00000417448 VIL1P09327 827 aaKnown RBP23.34■■□□□ 1.33
VCP-202ENST00000417448 ANGEL2Q5VTE6 544 aaKnown RBP23.34■■□□□ 1.33
VCP-202ENST00000417448 MOB2Q70IA6 237 aa23.34■■□□□ 1.33
VCP-202ENST00000417448 TSPYL4Q9UJ04 414 aa23.34■■□□□ 1.33
VCP-202ENST00000417448 BRCA2P51587 3418 aa23.33■■□□□ 1.32
VCP-202ENST00000417448 TBC1D16Q8TBP0 767 aa23.32■■□□□ 1.32
VCP-202ENST00000417448 NECTIN2Q92692 538 aa23.32■■□□□ 1.32
VCP-202ENST00000417448 SALL2Q9Y467 1007 aaPredicted RBP23.32■■□□□ 1.32
VCP-202ENST00000417448 ZNF280AP59817 542 aaPredicted RBP23.31■■□□□ 1.32
VCP-202ENST00000417448 FKBP1BP68106 108 aa23.31■■□□□ 1.32
VCP-202ENST00000417448 SCARF1Q14162 830 aa23.31■■□□□ 1.32
VCP-202ENST00000417448 SCAF8Q9UPN6 1271 aaKnown RBP23.31■■□□□ 1.32
VCP-202ENST00000417448 ZNF609O15014 1411 aa23.31■■□□□ 1.32
VCP-202ENST00000417448 SF3B3Q15393 1217 aaKnown RBP23.3■■□□□ 1.32
VCP-202ENST00000417448 EYA3Q99504 573 aa23.3■■□□□ 1.32
VCP-202ENST00000417448 FBXO46Q6PJ61 603 aaPredicted RBP23.29■■□□□ 1.32
VCP-202ENST00000417448 GCC1Q96CN9 775 aa23.29■■□□□ 1.32
VCP-202ENST00000417448 FAM89AQ96GI7 184 aa23.29■■□□□ 1.32
VCP-202ENST00000417448 GPR25O00155 361 aa23.28■■□□□ 1.32
VCP-202ENST00000417448 HABP4Q5JVS0 413 aaKnown RBP23.28■■□□□ 1.32
VCP-202ENST00000417448 LAS1LQ9Y4W2 734 aaKnown RBP23.28■■□□□ 1.32
VCP-202ENST00000417448 ZNF646O15015 1829 aaPredicted RBP23.26■■□□□ 1.31
VCP-202ENST00000417448 UBE2Q2LH0YL09 131 aa23.26■■□□□ 1.31
VCP-202ENST00000417448 TM4SF4P48230 202 aa23.26■■□□□ 1.31
VCP-202ENST00000417448 NOM1Q5C9Z4 860 aaKnown RBP23.26■■□□□ 1.31
VCP-202ENST00000417448 RSBN1LQ6PCB5 846 aaPredicted RBP23.26■■□□□ 1.31
VCP-202ENST00000417448 R3HDMLQ9H3Y0 253 aa23.26■■□□□ 1.31
VCP-202ENST00000417448 CCER2I3L3R5 266 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 LMOD3Q0VAK6 560 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 PRAMEF18Q5VWM3 479 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 GMLQ99445 158 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 ISCA1Q9BUE6 129 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 ZC3H12CQ9C0D7 883 aaKnown RBP23.25■■□□□ 1.31
VCP-202ENST00000417448 MYOZ2Q9NPC6 264 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 PODXL2Q9NZ53 605 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 PITPNM2Q9BZ72 1349 aa23.25■■□□□ 1.31
VCP-202ENST00000417448 KRT24Q2M2I5 525 aa23.24■■□□□ 1.31
VCP-202ENST00000417448 RTL5Q5HYW3 569 aaPredicted RBP23.24■■□□□ 1.31
VCP-202ENST00000417448 AGBL3Q8NEM8 1001 aa23.24■■□□□ 1.31
VCP-202ENST00000417448 RBBP6Q7Z6E9 1792 aaKnown RBP23.24■■□□□ 1.31
VCP-202ENST00000417448 ATP5J2-PTCD1G3V325 749 aa23.23■■□□□ 1.31
VCP-202ENST00000417448 UFL1O94874 794 aa23.23■■□□□ 1.31
VCP-202ENST00000417448 RPS8P62241 208 aaKnown RBP23.23■■□□□ 1.31
VCP-202ENST00000417448 MKRN3Q13064 507 aaKnown RBP23.23■■□□□ 1.31
VCP-202ENST00000417448 CHPF2Q9P2E5 772 aa23.22■■□□□ 1.31
VCP-202ENST00000417448 POTEFA5A3E0 1075 aa23.21■■□□□ 1.31
VCP-202ENST00000417448 USP17L8P0C7I0 530 aa23.21■■□□□ 1.31
VCP-202ENST00000417448 CFHR5Q9BXR6 569 aa23.21■■□□□ 1.31
VCP-202ENST00000417448 SEC31BQ9NQW1 1179 aa23.21■■□□□ 1.31
VCP-202ENST00000417448 KIAA0100Q14667 2235 aaKnown RBP23.2■■□□□ 1.3
VCP-202ENST00000417448 FKTNO75072 461 aa23.2■■□□□ 1.3
VCP-202ENST00000417448 NBPF9Q3BBW0 867 aa23.2■■□□□ 1.3
VCP-202ENST00000417448 PLBD2Q8NHP8 589 aa23.2■■□□□ 1.3
VCP-202ENST00000417448 BABAM1Q9NWV8 329 aa23.2■■□□□ 1.3
VCP-202ENST00000417448 G3V3G9 751 aa23.19■■□□□ 1.3
VCP-202ENST00000417448 IRS4O14654 1257 aaPredicted RBP23.19■■□□□ 1.3
VCP-202ENST00000417448 DCAF8Q5TAQ9 597 aa23.19■■□□□ 1.3
VCP-202ENST00000417448 ANKIB1Q9P2G1 1089 aa23.19■■□□□ 1.3
VCP-202ENST00000417448 SZT2Q5T011 3432 aa23.18■■□□□ 1.3
VCP-202ENST00000417448 TTLL12Q14166 644 aaPredicted RBP23.18■■□□□ 1.3
VCP-202ENST00000417448 ANKRD13DQ6ZTN6 518 aa23.18■■□□□ 1.3
VCP-202ENST00000417448 GGA1Q9UJY5 639 aa23.18■■□□□ 1.3
VCP-202ENST00000417448 LAMB1P07942 1786 aa23.17■■□□□ 1.3
VCP-202ENST00000417448 CHL1O00533 1208 aa23.16■■□□□ 1.3
VCP-202ENST00000417448 FXR1P51114 621 aaKnown RBP eCLIP23.16■■□□□ 1.3
VCP-202ENST00000417448 SREBF2Q12772 1141 aa23.16■■□□□ 1.3
VCP-202ENST00000417448 WWC1Q8IX03 1113 aa23.16■■□□□ 1.3
VCP-202ENST00000417448 PTPN12Q05209 780 aaKnown RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms