RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 KRT26Q7Z3Y9 468 aa16.8■□□□□ 0.28
LINC00339-202ENST00000416769 TBC1D16Q8TBP0 767 aa16.8■□□□□ 0.28
LINC00339-202ENST00000416769 PHAXQ9H814 394 aaKnown RBP16.8■□□□□ 0.28
LINC00339-202ENST00000416769 SCAF8Q9UPN6 1271 aaKnown RBP16.8■□□□□ 0.28
LINC00339-202ENST00000416769 MYBBP1AQ9BQG0 1328 aaKnown RBP16.79■□□□□ 0.28
LINC00339-202ENST00000416769 ELL2O00472 640 aaPredicted RBP16.79■□□□□ 0.28
LINC00339-202ENST00000416769 RUNDC1Q96C34 613 aa16.79■□□□□ 0.28
LINC00339-202ENST00000416769 HHIPL1Q96JK4 782 aa16.79■□□□□ 0.28
LINC00339-202ENST00000416769 CFAP44Q96MT7 982 aa16.79■□□□□ 0.28
LINC00339-202ENST00000416769 DPF2Q92785 391 aa16.78■□□□□ 0.28
LINC00339-202ENST00000416769 GGA3Q9NZ52 723 aa16.78■□□□□ 0.28
LINC00339-202ENST00000416769 DBF4Q9UBU7 674 aaPredicted RBP16.78■□□□□ 0.28
LINC00339-202ENST00000416769 RPS8P62241 208 aaKnown RBP16.77■□□□□ 0.28
LINC00339-202ENST00000416769 DGKZQ13574 1117 aa16.77■□□□□ 0.28
LINC00339-202ENST00000416769 KIF4BQ2VIQ3 1234 aa16.77■□□□□ 0.28
LINC00339-202ENST00000416769 TMC4Q7Z404 712 aa16.77■□□□□ 0.28
LINC00339-202ENST00000416769 MYD88Q99836 296 aa16.77■□□□□ 0.28
LINC00339-202ENST00000416769 GBA2Q9HCG7 927 aaPredicted RBP16.77■□□□□ 0.28
LINC00339-202ENST00000416769 UFL1O94874 794 aa16.76■□□□□ 0.27
LINC00339-202ENST00000416769 ANP32CO43423 234 aa16.75■□□□□ 0.27
LINC00339-202ENST00000416769 HOXB7P09629 217 aa16.75■□□□□ 0.27
LINC00339-202ENST00000416769 KIF23Q02241 960 aaPredicted RBP16.75■□□□□ 0.27
LINC00339-202ENST00000416769 MLLT1Q03111 559 aaPredicted RBP16.75■□□□□ 0.27
LINC00339-202ENST00000416769 NOGQ13253 232 aa16.75■□□□□ 0.27
LINC00339-202ENST00000416769 RGMBQ6NW40 437 aa16.75■□□□□ 0.27
LINC00339-202ENST00000416769 HYPKQ9NX55 129 aa16.75■□□□□ 0.27
LINC00339-202ENST00000416769 SPEF2Q9C093 1822 aa16.75■□□□□ 0.27
LINC00339-202ENST00000416769 VIL1P09327 827 aaKnown RBP16.74■□□□□ 0.27
LINC00339-202ENST00000416769 ZNF853P0CG23 659 aa16.74■□□□□ 0.27
LINC00339-202ENST00000416769 RGS19P49795 217 aa16.74■□□□□ 0.27
LINC00339-202ENST00000416769 WDR43Q15061 677 aaKnown RBP eCLIP16.74■□□□□ 0.27
LINC00339-202ENST00000416769 MOB2Q70IA6 237 aa16.74■□□□□ 0.27
LINC00339-202ENST00000416769 RIC3Q7Z5B4 369 aa16.74■□□□□ 0.27
LINC00339-202ENST00000416769 C8orf58Q8NAV2 365 aa16.74■□□□□ 0.27
LINC00339-202ENST00000416769 CDCA5Q96FF9 252 aa16.74■□□□□ 0.27
LINC00339-202ENST00000416769 PSME4Q14997 1843 aa16.73■□□□□ 0.27
LINC00339-202ENST00000416769 CA12O43570 354 aa16.73■□□□□ 0.27
LINC00339-202ENST00000416769 SLC34A2O95436 690 aa16.73■□□□□ 0.27
LINC00339-202ENST00000416769 RPS12P25398 132 aaKnown RBP16.73■□□□□ 0.27
LINC00339-202ENST00000416769 TRIM28Q13263 835 aaKnown RBP16.73■□□□□ 0.27
LINC00339-202ENST00000416769 ZBTB38Q8NAP3 1195 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-202ENST00000416769 DCPSQ96C86 337 aaKnown RBP16.73■□□□□ 0.27
LINC00339-202ENST00000416769 MXD3Q9BW11 206 aa16.73■□□□□ 0.27
LINC00339-202ENST00000416769 PRKRIP1Q9H875 184 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-202ENST00000416769 ZNF646O15015 1829 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-202ENST00000416769 PDE4DIPQ5VU43 2346 aa16.72■□□□□ 0.27
LINC00339-202ENST00000416769 APAF1O14727 1248 aa16.72■□□□□ 0.27
LINC00339-202ENST00000416769 ZNF157P51786 506 aaPredicted RBP16.72■□□□□ 0.27
LINC00339-202ENST00000416769 ANGEL2Q5VTE6 544 aaKnown RBP16.72■□□□□ 0.27
LINC00339-202ENST00000416769 PRAMEF18Q5VWM3 479 aa16.72■□□□□ 0.27
LINC00339-202ENST00000416769 EYA3Q99504 573 aa16.72■□□□□ 0.27
LINC00339-202ENST00000416769 RNF186Q9NXI6 227 aa16.72■□□□□ 0.27
LINC00339-202ENST00000416769 PODXL2Q9NZ53 605 aa16.72■□□□□ 0.27
LINC00339-202ENST00000416769 ANKIB1Q9P2G1 1089 aa16.72■□□□□ 0.27
LINC00339-202ENST00000416769 TRPA1O75762 1119 aa16.71■□□□□ 0.27
LINC00339-202ENST00000416769 SLC10A3P09131 477 aa16.71■□□□□ 0.27
LINC00339-202ENST00000416769 GOLGA2Q08379 1002 aa16.71■□□□□ 0.27
LINC00339-202ENST00000416769 SCARF1Q14162 830 aa16.71■□□□□ 0.27
LINC00339-202ENST00000416769 TSPYL6Q8N831 410 aa16.71■□□□□ 0.27
LINC00339-202ENST00000416769 C2orf69Q8N8R5 385 aa16.71■□□□□ 0.27
LINC00339-202ENST00000416769 ZC3H12CQ9C0D7 883 aaKnown RBP16.71■□□□□ 0.27
LINC00339-202ENST00000416769 GGA1Q9UJY5 639 aa16.71■□□□□ 0.27
LINC00339-202ENST00000416769 AKAP11Q9UKA4 1901 aa16.7■□□□□ 0.26
LINC00339-202ENST00000416769 SOX10P56693 466 aa16.7■□□□□ 0.26
LINC00339-202ENST00000416769 ZNF280AP59817 542 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-202ENST00000416769 RSBN1LQ6PCB5 846 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-202ENST00000416769 CSRNP1Q96S65 589 aa16.7■□□□□ 0.26
LINC00339-202ENST00000416769 GMLQ99445 158 aa16.7■□□□□ 0.26
LINC00339-202ENST00000416769 TNRC18O15417 2968 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-202ENST00000416769 PCCAP05165 728 aaPredicted RBP16.69■□□□□ 0.26
LINC00339-202ENST00000416769 RASAL3Q86YV0 1011 aa16.69■□□□□ 0.26
LINC00339-202ENST00000416769 SULF1Q8IWU6 871 aa16.69■□□□□ 0.26
LINC00339-202ENST00000416769 CWC25Q9NXE8 425 aaPredicted RBP16.68■□□□□ 0.26
LINC00339-202ENST00000416769 G3V3G9 751 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 PDE8AO60658 829 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 IGKV5-2P06315 115 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 KLRK1P26718 216 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 CCDC152Q4G0S7 254 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 DCAF8Q5TAQ9 597 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 TXNRD3Q86VQ6 643 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 CCDC191Q8NCU4 936 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 METTL22Q9BUU2 404 aaPredicted RBP16.67■□□□□ 0.26
LINC00339-202ENST00000416769 IFT57Q9NWB7 429 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 MAP3K2Q9Y2U5 619 aa16.67■□□□□ 0.26
LINC00339-202ENST00000416769 ZNF609O15014 1411 aa16.66■□□□□ 0.26
LINC00339-202ENST00000416769 CWF19L2Q2TBE0 894 aaKnown RBP16.66■□□□□ 0.26
LINC00339-202ENST00000416769 NBPF9Q3BBW0 867 aa16.66■□□□□ 0.26
LINC00339-202ENST00000416769 TSR2Q969E8 191 aaKnown RBP16.66■□□□□ 0.26
LINC00339-202ENST00000416769 CCDC102AQ96A19 550 aa16.66■□□□□ 0.26
LINC00339-202ENST00000416769 GREM2Q9H772 168 aa16.66■□□□□ 0.26
LINC00339-202ENST00000416769 MYOZ2Q9NPC6 264 aa16.66■□□□□ 0.26
LINC00339-202ENST00000416769 PAPPA2Q9BXP8 1791 aa16.66■□□□□ 0.26
LINC00339-202ENST00000416769 XDHP47989 1333 aa16.66■□□□□ 0.26
LINC00339-202ENST00000416769 MYH3P11055 1940 aa16.65■□□□□ 0.26
LINC00339-202ENST00000416769 UBE2Q2LH0YL09 131 aa16.65■□□□□ 0.26
LINC00339-202ENST00000416769 USP17L8P0C7I0 530 aa16.65■□□□□ 0.26
LINC00339-202ENST00000416769 CTSWP56202 376 aa16.65■□□□□ 0.26
LINC00339-202ENST00000416769 CCDC184Q52MB2 194 aa16.65■□□□□ 0.26
LINC00339-202ENST00000416769 G2E3Q7L622 706 aa16.65■□□□□ 0.26
LINC00339-202ENST00000416769 ANKRD18AQ8IVF6 992 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms