RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 NEURL1BA8MQ27 555 aa28.57■■■□□ 2.16
MSH6-202ENST00000411819 TRAF5O00463 557 aa28.57■■■□□ 2.16
MSH6-202ENST00000411819 PSMD14O00487 310 aa28.57■■■□□ 2.16
MSH6-202ENST00000411819 VEGFBP49765 207 aa28.57■■■□□ 2.16
MSH6-202ENST00000411819 FKBP5Q13451 457 aaPredicted RBP28.57■■■□□ 2.16
MSH6-202ENST00000411819 PODXL2Q9NZ53 605 aa28.57■■■□□ 2.16
MSH6-202ENST00000411819 CNOT7Q9UIV1 285 aaKnown RBP28.57■■■□□ 2.16
MSH6-202ENST00000411819 GGA1Q9UJY5 639 aa28.57■■■□□ 2.16
MSH6-202ENST00000411819 ZBTB12Q9Y330 459 aaPredicted RBP28.57■■■□□ 2.16
MSH6-202ENST00000411819 MICALL2Q8IY33 904 aa28.56■■■□□ 2.16
MSH6-202ENST00000411819 TRPM4Q8TD43 1214 aa28.56■■■□□ 2.16
MSH6-202ENST00000411819 ZC3H12CQ9C0D7 883 aaKnown RBP28.56■■■□□ 2.16
MSH6-202ENST00000411819 SHTN1A0MZ66 631 aa28.55■■■□□ 2.16
MSH6-202ENST00000411819 G3V3G9 751 aa28.55■■■□□ 2.16
MSH6-202ENST00000411819 EXOSC9Q06265 439 aaKnown RBP28.55■■■□□ 2.16
MSH6-202ENST00000411819 DEFB115Q30KQ5 88 aa28.55■■■□□ 2.16
MSH6-202ENST00000411819 DCAF8Q5TAQ9 597 aa28.55■■■□□ 2.16
MSH6-202ENST00000411819 UBE3BQ7Z3V4 1068 aa28.55■■■□□ 2.16
MSH6-202ENST00000411819 CDC5LQ99459 802 aaKnown RBP28.55■■■□□ 2.16
MSH6-202ENST00000411819 RASSF10A6NK89 507 aa28.54■■■□□ 2.16
MSH6-202ENST00000411819 H7C1D1 291 aa28.54■■■□□ 2.16
MSH6-202ENST00000411819 SCN9AQ15858 1988 aa28.53■■■□□ 2.16
MSH6-202ENST00000411819 XDHP47989 1333 aa28.52■■■□□ 2.16
MSH6-202ENST00000411819 VAMP4O75379 141 aa28.52■■■□□ 2.16
MSH6-202ENST00000411819 PAXIP1Q6ZW49 1069 aaPredicted RBP28.52■■■□□ 2.16
MSH6-202ENST00000411819 TTLL11Q8NHH1 800 aa28.52■■■□□ 2.16
MSH6-202ENST00000411819 DNAAF4Q8WXU2 420 aa28.52■■■□□ 2.16
MSH6-202ENST00000411819 KCNQ5Q9NR82 932 aa28.52■■■□□ 2.16
MSH6-202ENST00000411819 RTL9Q8NET4 1388 aa28.51■■■□□ 2.16
MSH6-202ENST00000411819 HIRAP54198 1017 aaPredicted RBP28.51■■■□□ 2.15
MSH6-202ENST00000411819 DPF2Q92785 391 aa28.51■■■□□ 2.15
MSH6-202ENST00000411819 GLIS2Q9BZE0 524 aaPredicted RBP28.51■■■□□ 2.15
MSH6-202ENST00000411819 GREM2Q9H772 168 aa28.51■■■□□ 2.15
MSH6-202ENST00000411819 MYH16Q9H6N6 1097 aa28.5■■■□□ 2.15
MSH6-202ENST00000411819 SPINK5Q9NQ38 1064 aaPredicted RBP28.5■■■□□ 2.15
MSH6-202ENST00000411819 RPS12P25398 132 aaKnown RBP28.49■■■□□ 2.15
MSH6-202ENST00000411819 GCKRQ14397 625 aa28.49■■■□□ 2.15
MSH6-202ENST00000411819 ZC3H15Q8WU90 426 aaKnown RBP28.49■■■□□ 2.15
MSH6-202ENST00000411819 AIDAQ96BJ3 306 aa28.49■■■□□ 2.15
MSH6-202ENST00000411819 H7C1W4 665 aa28.48■■■□□ 2.15
MSH6-202ENST00000411819 TBC1D10BQ4KMP7 808 aaPredicted RBP28.48■■■□□ 2.15
MSH6-202ENST00000411819 SAMD7Q7Z3H4 446 aa28.48■■■□□ 2.15
MSH6-202ENST00000411819 TNS4Q8IZW8 715 aa28.48■■■□□ 2.15
MSH6-202ENST00000411819 WDR33Q9C0J8 1336 aaKnown RBP28.47■■■□□ 2.15
MSH6-202ENST00000411819 CELF2O95319 508 aaKnown RBP28.47■■■□□ 2.15
MSH6-202ENST00000411819 ATP2B4P23634 1241 aa28.47■■■□□ 2.15
MSH6-202ENST00000411819 GRM1Q13255 1194 aa28.47■■■□□ 2.15
MSH6-202ENST00000411819 CST9Q5W186 159 aa28.47■■■□□ 2.15
MSH6-202ENST00000411819 LINS1Q8NG48 757 aa28.47■■■□□ 2.15
MSH6-202ENST00000411819 ZNF408Q9H9D4 720 aa28.47■■■□□ 2.15
MSH6-202ENST00000411819 PGAP2Q9UHJ9 254 aa28.47■■■□□ 2.15
MSH6-202ENST00000411819 PSME4Q14997 1843 aa28.47■■■□□ 2.15
MSH6-202ENST00000411819 FOXN1O15353 648 aa28.46■■■□□ 2.15
MSH6-202ENST00000411819 BSDC1Q9NW68 430 aaPredicted RBP28.46■■■□□ 2.15
MSH6-202ENST00000411819 RBM26Q5T8P6 1007 aaKnown RBP28.45■■■□□ 2.14
MSH6-202ENST00000411819 CDC37L1Q7L3B6 337 aa28.45■■■□□ 2.14
MSH6-202ENST00000411819 TLL2Q9Y6L7 1015 aa28.45■■■□□ 2.14
MSH6-202ENST00000411819 IGHMBP2P38935 993 aaKnown RBP28.44■■■□□ 2.14
MSH6-202ENST00000411819 MINPP1Q9UNW1 487 aa28.44■■■□□ 2.14
MSH6-202ENST00000411819 F6X3S4 739 aa28.43■■■□□ 2.14
MSH6-202ENST00000411819 EGFRP00533 1210 aa28.43■■■□□ 2.14
MSH6-202ENST00000411819 VIL1P09327 827 aaKnown RBP28.43■■■□□ 2.14
MSH6-202ENST00000411819 FAM161AQ3B820 660 aa28.43■■■□□ 2.14
MSH6-202ENST00000411819 CYP4F22Q6NT55 531 aa28.43■■■□□ 2.14
MSH6-202ENST00000411819 CAPNS2Q96L46 248 aa28.43■■■□□ 2.14
MSH6-202ENST00000411819 PLA2G12BQ9BX93 195 aa28.43■■■□□ 2.14
MSH6-202ENST00000411819 THSD7BQ9C0I4 1608 aa28.43■■■□□ 2.14
MSH6-202ENST00000411819 ITGA6P23229 1130 aa28.42■■■□□ 2.14
MSH6-202ENST00000411819 ECE1P42892 770 aa28.42■■■□□ 2.14
MSH6-202ENST00000411819 KIF4BQ2VIQ3 1234 aa28.42■■■□□ 2.14
MSH6-202ENST00000411819 MED23Q9ULK4 1368 aa28.41■■■□□ 2.14
MSH6-202ENST00000411819 CASP7P55210 303 aa28.41■■■□□ 2.14
MSH6-202ENST00000411819 USP48Q86UV5 1035 aa28.41■■■□□ 2.14
MSH6-202ENST00000411819 WBP1LQ9NX94 342 aa28.41■■■□□ 2.14
MSH6-202ENST00000411819 CCT4P50991 539 aaKnown RBP28.4■■■□□ 2.14
MSH6-202ENST00000411819 RSBN1LQ6PCB5 846 aaPredicted RBP28.4■■■□□ 2.14
MSH6-202ENST00000411819 POLR2AP24928 1970 aaKnown RBP28.4■■■□□ 2.14
MSH6-202ENST00000411819 WTIPA6NIX2 430 aaPredicted RBP28.39■■■□□ 2.14
MSH6-202ENST00000411819 CTCFP49711 727 aaPredicted RBP28.39■■■□□ 2.14
MSH6-202ENST00000411819 MAP2K1Q02750 393 aaPredicted RBP28.39■■■□□ 2.14
MSH6-202ENST00000411819 KRT26Q7Z3Y9 468 aa28.39■■■□□ 2.14
MSH6-202ENST00000411819 MPHOSPH8Q99549 860 aa28.39■■■□□ 2.14
MSH6-202ENST00000411819 SAPCD2Q86UD0 394 aa28.38■■■□□ 2.13
MSH6-202ENST00000411819 DCPSQ96C86 337 aaKnown RBP28.38■■■□□ 2.13
MSH6-202ENST00000411819 ZNF609O15014 1411 aa28.37■■■□□ 2.13
MSH6-202ENST00000411819 BEND3Q5T5X7 828 aa28.37■■■□□ 2.13
MSH6-202ENST00000411819 PODNQ7Z5L7 613 aa28.37■■■□□ 2.13
MSH6-202ENST00000411819 AGBL3Q8NEM8 1001 aa28.37■■■□□ 2.13
MSH6-202ENST00000411819 CHMP3Q9Y3E7 222 aa28.37■■■□□ 2.13
MSH6-202ENST00000411819 USP17L3A6NCW0 530 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 USP17L4A6NCW7 530 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 CAPN15O75808 1086 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 CSF1RP07333 972 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 DLK2Q6UY11 383 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 USP17L1Q7RTZ2 530 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 FBXW7Q969H0 707 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 GGA3Q9NZ52 723 aa28.36■■■□□ 2.13
MSH6-202ENST00000411819 ANKRD18BA2A2Z9 1011 aa28.35■■■□□ 2.13
MSH6-202ENST00000411819 ADM5C9JUS6 153 aa28.35■■■□□ 2.13
MSH6-202ENST00000411819 ANKRD2Q9GZV1 360 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms