RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 ERFEQ4G0M1 354 aa25.71■■□□□ 1.71
TPM1-208ENST00000404484 EYA2O00167 538 aa25.7■■□□□ 1.71
TPM1-208ENST00000404484 AACSQ86V21 672 aa25.7■■□□□ 1.71
TPM1-208ENST00000404484 SYNE4Q8N205 404 aa25.7■■□□□ 1.71
TPM1-208ENST00000404484 ZNF622Q969S3 477 aaKnown RBP eCLIP25.7■■□□□ 1.716e-7■■□□□ 13.8
TPM1-208ENST00000404484 BRCA1P38398 1863 aaKnown RBP25.7■■□□□ 1.7
TPM1-208ENST00000404484 ERC2O15083 957 aa25.69■■□□□ 1.7
TPM1-208ENST00000404484 ANKRD18BA2A2Z9 1011 aa25.69■■□□□ 1.7
TPM1-208ENST00000404484 KLRG2A4D1S0 409 aaPredicted RBP25.69■■□□□ 1.7
TPM1-208ENST00000404484 SRGNP10124 158 aa25.69■■□□□ 1.7
TPM1-208ENST00000404484 CASC1Q6TDU7 716 aa25.69■■□□□ 1.7
TPM1-208ENST00000404484 TTLL6Q8N841 843 aa25.69■■□□□ 1.7
TPM1-208ENST00000404484 ANP32AP39687 249 aaKnown RBP25.68■■□□□ 1.7
TPM1-208ENST00000404484 GPR108Q9NPR9 543 aa25.68■■□□□ 1.7
TPM1-208ENST00000404484 ECHDC1Q9NTX5 307 aa25.68■■□□□ 1.7
TPM1-208ENST00000404484 GLRX3O76003 335 aaKnown RBP25.67■■□□□ 1.7
TPM1-208ENST00000404484 SDSP20132 328 aa25.67■■□□□ 1.7
TPM1-208ENST00000404484 RTL9Q8NET4 1388 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 ABCC12Q96J65 1359 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 ITGA6P23229 1130 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 TFCP2Q12800 502 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 CCDC152Q4G0S7 254 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 ARHGAP27Q6ZUM4 889 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 ATG9AQ7Z3C6 839 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 GREM2Q9H772 168 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 CHD4Q14839 1912 aa25.66■■□□□ 1.7
TPM1-208ENST00000404484 DDX60Q8IY21 1712 aaKnown RBP25.66■■□□□ 1.7
TPM1-208ENST00000404484 EAF2Q96CJ1 260 aaPredicted RBP25.65■■□□□ 1.7
TPM1-208ENST00000404484 MASTLQ96GX5 879 aa25.65■■□□□ 1.7
TPM1-208ENST00000404484 HCLS1P14317 486 aaPredicted RBP25.65■■□□□ 1.7
TPM1-208ENST00000404484 TNNI3KQ59H18 835 aa25.65■■□□□ 1.7
TPM1-208ENST00000404484 STYK1Q6J9G0 422 aa25.65■■□□□ 1.7
TPM1-208ENST00000404484 TBC1D9Q6ZT07 1266 aa25.65■■□□□ 1.7
TPM1-208ENST00000404484 PI4K2BQ8TCG2 481 aa25.65■■□□□ 1.7
TPM1-208ENST00000404484 ZNF594Q96JF6 807 aaPredicted RBP25.65■■□□□ 1.7
TPM1-208ENST00000404484 FPGT-TNNI3KV9GXZ4 949 aa25.65■■□□□ 1.7
TPM1-208ENST00000404484 TSHZ3Q63HK5 1081 aa25.64■■□□□ 1.69
TPM1-208ENST00000404484 CCDC85AQ96PX6 553 aaPredicted RBP25.64■■□□□ 1.69
TPM1-208ENST00000404484 CEP126Q9P2H0 1117 aa25.63■■□□□ 1.69
TPM1-208ENST00000404484 NPR1P16066 1061 aa25.62■■□□□ 1.69
TPM1-208ENST00000404484 SLC10A5Q5PT55 438 aa25.62■■□□□ 1.69
TPM1-208ENST00000404484 CNKSR1Q969H4 720 aa25.62■■□□□ 1.69
TPM1-208ENST00000404484 DLEC1Q9Y238 1755 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 TRIM6-TRIM34B2RNG4 842 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 SEC24BO95487 1268 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 CRY2Q49AN0 593 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 LRRC24Q50LG9 513 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 AKAP2Q9Y2D5 859 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 COL11A2P13942 1736 aaPredicted RBP25.61■■□□□ 1.69
TPM1-208ENST00000404484 LDHAL6AQ6ZMR3 332 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 C3orf67Q6ZVT6 689 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 CNTROBQ8N137 903 aa25.61■■□□□ 1.69
TPM1-208ENST00000404484 CCDC8Q9H0W5 538 aaPredicted RBP25.61■■□□□ 1.69
TPM1-208ENST00000404484 ARFGEF1Q9Y6D6 1849 aa25.6■■□□□ 1.69
TPM1-208ENST00000404484 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.6■■□□□ 1.69
TPM1-208ENST00000404484 PRPF40BQ6NWY9 871 aaKnown RBP25.59■■□□□ 1.69
TPM1-208ENST00000404484 PUS3Q9BZE2 481 aaKnown RBP25.59■■□□□ 1.69
TPM1-208ENST00000404484 CNNM1Q9NRU3 951 aa25.59■■□□□ 1.69
TPM1-208ENST00000404484 ZNF219Q9P2Y4 722 aaPredicted RBP25.59■■□□□ 1.69
TPM1-208ENST00000404484 ZNF609O15014 1411 aa25.58■■□□□ 1.69
TPM1-208ENST00000404484 C21orf2O43822 256 aa25.58■■□□□ 1.69
TPM1-208ENST00000404484 MFAP1P55081 439 aaKnown RBP25.58■■□□□ 1.69
TPM1-208ENST00000404484 SF3B3Q15393 1217 aaKnown RBP25.58■■□□□ 1.69
TPM1-208ENST00000404484 RILPL2Q969X0 211 aa25.58■■□□□ 1.69
TPM1-208ENST00000404484 NLRP3Q96P20 1036 aa25.57■■□□□ 1.68
TPM1-208ENST00000404484 DBNLQ9UJU6 430 aaKnown RBP25.57■■□□□ 1.68
TPM1-208ENST00000404484 RIPOR2Q9Y4F9 1068 aa25.57■■□□□ 1.68
TPM1-208ENST00000404484 RIC1Q4ADV7 1423 aa25.57■■□□□ 1.68
TPM1-208ENST00000404484 CDC5LQ99459 802 aaKnown RBP25.56■■□□□ 1.68
TPM1-208ENST00000404484 TLR7Q9NYK1 1049 aaKnown RBP25.56■■□□□ 1.68
TPM1-208ENST00000404484 METTL24Q5JXM2 366 aa25.56■■□□□ 1.68
TPM1-208ENST00000404484 TNRC6CQ9HCJ0 1690 aaKnown RBP25.55■■□□□ 1.68
TPM1-208ENST00000404484 SLX4Q8IY92 1834 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 MROH5Q6ZUA9 1318 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 AK9Q5TCS8 1911 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 ATP5JP18859 108 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 ALDH1B1P30837 517 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 HOXA10P31260 410 aaPredicted RBP25.55■■□□□ 1.68
TPM1-208ENST00000404484 IGHMBP2P38935 993 aaKnown RBP25.55■■□□□ 1.68
TPM1-208ENST00000404484 C7orf43Q8WVR3 580 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 TBC1D32Q96NH3 1257 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 MPHOSPH8Q99549 860 aa25.55■■□□□ 1.68
TPM1-208ENST00000404484 ZNF784Q8NCA9 323 aaPredicted RBP25.54■■□□□ 1.68
TPM1-208ENST00000404484 RPGRQ92834 1020 aaKnown RBP25.54■■□□□ 1.68
TPM1-208ENST00000404484 A0A1B0GUL7 405 aa25.53■■□□□ 1.68
TPM1-208ENST00000404484 EVI5LQ96CN4 794 aa25.53■■□□□ 1.68
TPM1-208ENST00000404484 NEUROD6Q96NK8 337 aa25.53■■□□□ 1.68
TPM1-208ENST00000404484 DBNDD2Q9BQY9 259 aa25.53■■□□□ 1.68
TPM1-208ENST00000404484 RASSF7Q02833 373 aa25.52■■□□□ 1.68
TPM1-208ENST00000404484 DDRGK1Q96HY6 314 aa25.52■■□□□ 1.68
TPM1-208ENST00000404484 RBM17Q96I25 401 aaKnown RBP25.52■■□□□ 1.68
TPM1-208ENST00000404484 C22orf23Q9BZE7 217 aa25.52■■□□□ 1.68
TPM1-208ENST00000404484 NFKBIEO00221 500 aa25.51■■□□□ 1.67
TPM1-208ENST00000404484 REC8O95072 547 aa25.51■■□□□ 1.67
TPM1-208ENST00000404484 C9orf131Q5VYM1 1079 aa25.51■■□□□ 1.67
TPM1-208ENST00000404484 CRAMP1Q96RY5 1269 aa25.51■■□□□ 1.67
TPM1-208ENST00000404484 CHMLP26374 656 aa25.5■■□□□ 1.67
TPM1-208ENST00000404484 PRELPP51888 382 aa25.5■■□□□ 1.67
TPM1-208ENST00000404484 ATP2B3Q16720 1220 aa25.5■■□□□ 1.67
TPM1-208ENST00000404484 OLFM4Q6UX06 510 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms