RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 SYT17Q9BSW7 474 aa15.26■□□□□ 0.03
LINC00339-201ENST00000404210 FHDC1Q9C0D6 1143 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-201ENST00000404210 RNF39Q9H2S5 420 aa15.26■□□□□ 0.03
LINC00339-201ENST00000404210 CNNM1Q9NRU3 951 aa15.26■□□□□ 0.03
LINC00339-201ENST00000404210 DLEC1Q9Y238 1755 aa15.26■□□□□ 0.03
LINC00339-201ENST00000404210 COL11A2P13942 1736 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-201ENST00000404210 KIAA1551Q9HCM1 1747 aa15.26■□□□□ 0.03
LINC00339-201ENST00000404210 ERC1Q8IUD2 1116 aa15.25■□□□□ 0.03
LINC00339-201ENST00000404210 SIL1Q9H173 461 aa15.25■□□□□ 0.03
LINC00339-201ENST00000404210 EXOC6BQ9Y2D4 811 aa15.25■□□□□ 0.03
LINC00339-201ENST00000404210 MROH5Q6ZUA9 1318 aa15.24■□□□□ 0.03
LINC00339-201ENST00000404210 PPEF1O14829 653 aaPredicted RBP15.24■□□□□ 0.03
LINC00339-201ENST00000404210 MINPP1Q9UNW1 487 aa15.24■□□□□ 0.03
LINC00339-201ENST00000404210 ATP6V0A2Q9Y487 856 aa15.24■□□□□ 0.03
LINC00339-201ENST00000404210 LRP5O75197 1615 aa15.24■□□□□ 0.03
LINC00339-201ENST00000404210 SLX4Q8IY92 1834 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 SASH1O94885 1247 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 OS9Q13438 667 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-201ENST00000404210 CC2D2BQ6DHV5 1058 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 B4GALNT3Q6L9W6 998 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 PRPF40BQ6NWY9 871 aaKnown RBP15.23■□□□□ 0.03
LINC00339-201ENST00000404210 CENPQQ7L2Z9 268 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-201ENST00000404210 NLGN2Q8NFZ4 835 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 RHPN1Q8TCX5 695 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 C7orf43Q8WVR3 580 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 KIF1BPQ96EK5 621 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 ANKRD2Q9GZV1 360 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 TMX4Q9H1E5 349 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-201ENST00000404210 CEP126Q9P2H0 1117 aa15.23■□□□□ 0.03
LINC00339-201ENST00000404210 COL4A1P02462 1669 aa15.22■□□□□ 0.03
LINC00339-201ENST00000404210 CHRNDQ07001 517 aa15.22■□□□□ 0.03
LINC00339-201ENST00000404210 GRIPAP1Q4V328 841 aa15.22■□□□□ 0.03
LINC00339-201ENST00000404210 DALRD3Q5D0E6 543 aaKnown RBP15.22■□□□□ 0.03
LINC00339-201ENST00000404210 METTL24Q5JXM2 366 aa15.22■□□□□ 0.03
LINC00339-201ENST00000404210 SPEF2Q9C093 1822 aa15.22■□□□□ 0.03
LINC00339-201ENST00000404210 KDM2BQ8NHM5 1336 aa15.21■□□□□ 0.03
LINC00339-201ENST00000404210 BRCA1P38398 1863 aaKnown RBP15.21■□□□□ 0.03
LINC00339-201ENST00000404210 PDE8BO95263 885 aa15.21■□□□□ 0.03
LINC00339-201ENST00000404210 LRRCC1Q9C099 1032 aa15.21■□□□□ 0.03
LINC00339-201ENST00000404210 GPR108Q9NPR9 543 aa15.21■□□□□ 0.03
LINC00339-201ENST00000404210 CACNA1SQ13698 1873 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 TFCP2Q12800 502 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 SOGA3Q5TF21 947 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 ANKRD45Q5TZF3 282 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 VGLL2Q8N8G2 317 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 PODXL2Q9NZ53 605 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 AKAP2Q9Y2D5 859 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 LEMD3Q9Y2U8 911 aa15.2■□□□□ 0.02
LINC00339-201ENST00000404210 C21orf2O43822 256 aa15.19■□□□□ 0.02
LINC00339-201ENST00000404210 TAF5LO75529 589 aa15.19■□□□□ 0.02
LINC00339-201ENST00000404210 ATP2B4P23634 1241 aa15.19■□□□□ 0.02
LINC00339-201ENST00000404210 NUCB1Q02818 461 aa15.19■□□□□ 0.02
LINC00339-201ENST00000404210 UBE4AQ14139 1066 aa15.19■□□□□ 0.02
LINC00339-201ENST00000404210 MPNDQ8N594 471 aa15.19■□□□□ 0.02
LINC00339-201ENST00000404210 HELBQ8NG08 1087 aaPredicted RBP15.19■□□□□ 0.02
LINC00339-201ENST00000404210 ANKIB1Q9P2G1 1089 aa15.19■□□□□ 0.02
LINC00339-201ENST00000404210 ZBTB47Q9UFB7 747 aaPredicted RBP15.19■□□□□ 0.02
LINC00339-201ENST00000404210 NSFL1CQ9UNZ2 370 aaKnown RBP15.19■□□□□ 0.02
LINC00339-201ENST00000404210 XDHP47989 1333 aa15.18■□□□□ 0.02
LINC00339-201ENST00000404210 APBB1O00213 710 aa15.18■□□□□ 0.02
LINC00339-201ENST00000404210 GPSM2P81274 684 aa15.18■□□□□ 0.02
LINC00339-201ENST00000404210 RTKN2Q8IZC4 609 aa15.18■□□□□ 0.02
LINC00339-201ENST00000404210 CLASRPQ8N2M8 674 aaKnown RBP15.18■□□□□ 0.02
LINC00339-201ENST00000404210 BCS1LQ9Y276 419 aa15.18■□□□□ 0.02
LINC00339-201ENST00000404210 FGFR2P21802 821 aa15.17■□□□□ 0.02
LINC00339-201ENST00000404210 CCDC93Q567U6 631 aa15.17■□□□□ 0.02
LINC00339-201ENST00000404210 CHD1LQ86WJ1 897 aa15.17■□□□□ 0.02
LINC00339-201ENST00000404210 LPIN2Q92539 896 aa15.17■□□□□ 0.02
LINC00339-201ENST00000404210 ZNF219Q9P2Y4 722 aaPredicted RBP15.17■□□□□ 0.02
LINC00339-201ENST00000404210 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.17■□□□□ 0.02
LINC00339-201ENST00000404210 LRRC37AA6NMS7 1700 aa15.17■□□□□ 0.02
LINC00339-201ENST00000404210 SMARCA5O60264 1052 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-201ENST00000404210 TIMM10P62072 90 aa15.16■□□□□ 0.02
LINC00339-201ENST00000404210 PUM3Q15397 648 aaKnown RBP15.16■□□□□ 0.02
LINC00339-201ENST00000404210 TNNI3KQ59H18 835 aa15.16■□□□□ 0.02
LINC00339-201ENST00000404210 OLFM4Q6UX06 510 aa15.16■□□□□ 0.02
LINC00339-201ENST00000404210 DPP8Q6V1X1 898 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-201ENST00000404210 EAF2Q96CJ1 260 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-201ENST00000404210 RTFDC1Q9BY42 306 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-201ENST00000404210 IL1RAPL2Q9NP60 686 aa15.16■□□□□ 0.02
LINC00339-201ENST00000404210 GGA1Q9UJY5 639 aa15.16■□□□□ 0.02
LINC00339-201ENST00000404210 FPGT-TNNI3KV9GXZ4 949 aa15.16■□□□□ 0.02
LINC00339-201ENST00000404210 ZNF804BA4D1E1 1349 aa15.16■□□□□ 0.02
LINC00339-201ENST00000404210 ARFGEF1Q9Y6D6 1849 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 A0A1B0GUL7 405 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 IFIT1P09914 478 aaKnown RBP15.15■□□□□ 0.02
LINC00339-201ENST00000404210 SLC5A1P13866 664 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 KCNJ4P48050 445 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 ATP2B3Q16720 1220 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 C15orf52Q6ZUT6 534 aaKnown RBP15.15■□□□□ 0.02
LINC00339-201ENST00000404210 SUPT20HQ8NEM7 779 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 TBC1D16Q8TBP0 767 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 POLLQ9UGP5 575 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 A0A1B0GUL6 1792 aa15.15■□□□□ 0.02
LINC00339-201ENST00000404210 SLC51AQ86UW1 340 aa15.14■□□□□ 0.01
LINC00339-201ENST00000404210 NEUROD6Q96NK8 337 aa15.14■□□□□ 0.01
LINC00339-201ENST00000404210 PSMD1Q99460 953 aa15.14■□□□□ 0.01
LINC00339-201ENST00000404210 EYA3Q99504 573 aa15.14■□□□□ 0.01
LINC00339-201ENST00000404210 VPS33BQ9H267 617 aa15.14■□□□□ 0.01
LINC00339-201ENST00000404210 WWC3Q9ULE0 1092 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms