RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 LNPKQ9C0E8 428 aa22.29■■□□□ 1.16
SDC1-203ENST00000403076 IL1RAPL2Q9NP60 686 aa22.29■■□□□ 1.16
SDC1-203ENST00000403076 A0A0G2JLW4 131 aa22.28■■□□□ 1.16
SDC1-203ENST00000403076 DPEP1P16444 411 aa22.28■■□□□ 1.16
SDC1-203ENST00000403076 TGFB2P61812 414 aa22.28■■□□□ 1.16
SDC1-203ENST00000403076 CNKSR1Q969H4 720 aa22.28■■□□□ 1.16
SDC1-203ENST00000403076 CD2APQ9Y5K6 639 aa22.28■■□□□ 1.16
SDC1-203ENST00000403076 TAF1P21675 1872 aa22.28■■□□□ 1.16
SDC1-203ENST00000403076 MROH5Q6ZUA9 1318 aa22.28■■□□□ 1.16
SDC1-203ENST00000403076 PPEF1O14829 653 aaPredicted RBP22.26■■□□□ 1.15
SDC1-203ENST00000403076 CLASRPQ8N2M8 674 aaKnown RBP22.26■■□□□ 1.15
SDC1-203ENST00000403076 HELBQ8NG08 1087 aaPredicted RBP22.26■■□□□ 1.15
SDC1-203ENST00000403076 CHRNDQ07001 517 aa22.26■■□□□ 1.15
SDC1-203ENST00000403076 TMC4Q7Z404 712 aa22.26■■□□□ 1.15
SDC1-203ENST00000403076 TMX4Q9H1E5 349 aaPredicted RBP22.26■■□□□ 1.15
SDC1-203ENST00000403076 MINPP1Q9UNW1 487 aa22.26■■□□□ 1.15
SDC1-203ENST00000403076 COL4A1P02462 1669 aa22.25■■□□□ 1.15
SDC1-203ENST00000403076 COL11A2P13942 1736 aaPredicted RBP22.25■■□□□ 1.15
SDC1-203ENST00000403076 SPEF2Q9C093 1822 aa22.24■■□□□ 1.15
SDC1-203ENST00000403076 TTLL6Q8N841 843 aa22.24■■□□□ 1.15
SDC1-203ENST00000403076 ANKRD2Q9GZV1 360 aa22.24■■□□□ 1.15
SDC1-203ENST00000403076 AKAP2Q9Y2D5 859 aa22.24■■□□□ 1.15
SDC1-203ENST00000403076 TAF5LO75529 589 aa22.23■■□□□ 1.15
SDC1-203ENST00000403076 PRPF40BQ6NWY9 871 aaKnown RBP22.23■■□□□ 1.15
SDC1-203ENST00000403076 AACSQ86V21 672 aa22.23■■□□□ 1.15
SDC1-203ENST00000403076 LRP5O75197 1615 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 PDE8BO95263 885 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 IFIT2P09913 472 aaKnown RBP22.22■■□□□ 1.15
SDC1-203ENST00000403076 TNNI3KQ59H18 835 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 SP8Q8IXZ3 490 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 NEUROD6Q96NK8 337 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 PIM2Q9P1W9 311 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 ANKIB1Q9P2G1 1089 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 ZNF219Q9P2Y4 722 aaPredicted RBP22.22■■□□□ 1.15
SDC1-203ENST00000403076 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.22■■□□□ 1.15
SDC1-203ENST00000403076 FPGT-TNNI3KV9GXZ4 949 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 KIF13BQ9NQT8 1826 aa22.22■■□□□ 1.15
SDC1-203ENST00000403076 C16orf71Q8IYS4 520 aaPredicted RBP22.21■■□□□ 1.15
SDC1-203ENST00000403076 GPR108Q9NPR9 543 aa22.21■■□□□ 1.15
SDC1-203ENST00000403076 ATP6V0A2Q9Y487 856 aa22.21■■□□□ 1.15
SDC1-203ENST00000403076 KCNA3P22001 575 aa22.21■■□□□ 1.15
SDC1-203ENST00000403076 KCNJ4P48050 445 aa22.21■■□□□ 1.15
SDC1-203ENST00000403076 RGS3P49796 1198 aa22.21■■□□□ 1.15
SDC1-203ENST00000403076 ATP2B3Q16720 1220 aa22.21■■□□□ 1.15
SDC1-203ENST00000403076 EAF2Q96CJ1 260 aaPredicted RBP22.21■■□□□ 1.15
SDC1-203ENST00000403076 CCDC8Q9H0W5 538 aaPredicted RBP22.21■■□□□ 1.15
SDC1-203ENST00000403076 PUM3Q15397 648 aaKnown RBP22.2■■□□□ 1.14
SDC1-203ENST00000403076 SKAP1Q86WV1 359 aa22.2■■□□□ 1.14
SDC1-203ENST00000403076 VGLL2Q8N8G2 317 aa22.2■■□□□ 1.14
SDC1-203ENST00000403076 NSFL1CQ9UNZ2 370 aaKnown RBP22.2■■□□□ 1.14
SDC1-203ENST00000403076 A0A1B0GUL7 405 aa22.19■■□□□ 1.14
SDC1-203ENST00000403076 PDE4AP27815 886 aa22.19■■□□□ 1.14
SDC1-203ENST00000403076 TIMM10P62072 90 aa22.19■■□□□ 1.14
SDC1-203ENST00000403076 FHDC1Q9C0D6 1143 aaPredicted RBP22.19■■□□□ 1.14
SDC1-203ENST00000403076 WWC3Q9ULE0 1092 aa22.19■■□□□ 1.14
SDC1-203ENST00000403076 SLC5A1P13866 664 aa22.18■■□□□ 1.14
SDC1-203ENST00000403076 DALRD3Q5D0E6 543 aaKnown RBP22.18■■□□□ 1.14
SDC1-203ENST00000403076 NLGN2Q8NFZ4 835 aa22.18■■□□□ 1.14
SDC1-203ENST00000403076 XDHP47989 1333 aa22.18■■□□□ 1.14
SDC1-203ENST00000403076 IFIT1P09914 478 aaKnown RBP22.17■■□□□ 1.14
SDC1-203ENST00000403076 GPSM2P81274 684 aa22.17■■□□□ 1.14
SDC1-203ENST00000403076 GORABQ5T7V8 394 aa22.17■■□□□ 1.14
SDC1-203ENST00000403076 SLC51AQ86UW1 340 aa22.17■■□□□ 1.14
SDC1-203ENST00000403076 OTUD7AQ8TE49 926 aaPredicted RBP22.17■■□□□ 1.14
SDC1-203ENST00000403076 LPIN2Q92539 896 aa22.17■■□□□ 1.14
SDC1-203ENST00000403076 SNAP23O00161 211 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 UBE4AQ14139 1066 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 C21orf2O43822 256 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 OLFM4Q6UX06 510 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 MPNDQ8N594 471 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 GPATCH3Q96I76 525 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 GGA1Q9UJY5 639 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 LEMD3Q9Y2U8 911 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 CACNA1SQ13698 1873 aa22.16■■□□□ 1.14
SDC1-203ENST00000403076 ZNF609O15014 1411 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 SLX4Q8IY92 1834 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 DLEC1Q9Y238 1755 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 ZNF804BA4D1E1 1349 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 MX1P20591 662 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 FGFR2P21802 821 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 ATP2B4P23634 1241 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 CC2D2BQ6DHV5 1058 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 XAGE2Q96GT9 111 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 DBNDD2Q9BQY9 259 aa22.15■■□□□ 1.14
SDC1-203ENST00000403076 TLR7Q9NYK1 1049 aaKnown RBP22.15■■□□□ 1.14
SDC1-203ENST00000403076 C6orf229H3BNL8 230 aa22.14■■□□□ 1.13
SDC1-203ENST00000403076 UFL1O94874 794 aa22.14■■□□□ 1.13
SDC1-203ENST00000403076 DPP8Q6V1X1 898 aaPredicted RBP22.14■■□□□ 1.13
SDC1-203ENST00000403076 PLEKHM2Q8IWE5 1019 aa22.14■■□□□ 1.13
SDC1-203ENST00000403076 SYT17Q9BSW7 474 aa22.14■■□□□ 1.13
SDC1-203ENST00000403076 PODXL2Q9NZ53 605 aa22.14■■□□□ 1.13
SDC1-203ENST00000403076 DBNLQ9UJU6 430 aaKnown RBP22.14■■□□□ 1.13
SDC1-203ENST00000403076 BCS1LQ9Y276 419 aa22.14■■□□□ 1.13
SDC1-203ENST00000403076 ADORA1P30542 326 aa22.13■■□□□ 1.13
SDC1-203ENST00000403076 C7orf43Q8WVR3 580 aa22.13■■□□□ 1.13
SDC1-203ENST00000403076 KIAA1551Q9HCM1 1747 aa22.13■■□□□ 1.13
SDC1-203ENST00000403076 WTIPA6NIX2 430 aaPredicted RBP22.12■■□□□ 1.13
SDC1-203ENST00000403076 PDE1AP54750 535 aa22.12■■□□□ 1.13
SDC1-203ENST00000403076 CCDC93Q567U6 631 aa22.11■■□□□ 1.13
SDC1-203ENST00000403076 CCDC158Q5M9N0 1113 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms