RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 DDX21Q9NR30 783 aaKnown RBP eCLIP11.79□□□□□ -0.52
VPS53-203ENST00000401468 ZNF652Q9Y2D9 606 aa11.79□□□□□ -0.52
VPS53-203ENST00000401468 COL4A5P29400 1685 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 MYH3P11055 1940 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 ALDH1L2Q3SY69 923 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 CCDC30Q5VVM6 783 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 KIF6Q6ZMV9 814 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 C16orf71Q8IYS4 520 aaPredicted RBP11.78□□□□□ -0.52
VPS53-203ENST00000401468 SYNE4Q8N205 404 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 DBF4Q9UBU7 674 aaPredicted RBP11.78□□□□□ -0.52
VPS53-203ENST00000401468 SCN4AP35499 1836 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 MAP3K15Q6ZN16 1313 aa11.78□□□□□ -0.52
VPS53-203ENST00000401468 ELL2O00472 640 aaPredicted RBP11.77□□□□□ -0.53
VPS53-203ENST00000401468 SUSD4Q5VX71 490 aa11.77□□□□□ -0.53
VPS53-203ENST00000401468 MASTLQ96GX5 879 aa11.77□□□□□ -0.53
VPS53-203ENST00000401468 ZNF277Q9NRM2 450 aaPredicted RBP11.77□□□□□ -0.53
VPS53-203ENST00000401468 KDM2BQ8NHM5 1336 aa11.77□□□□□ -0.53
VPS53-203ENST00000401468 TOMM70O94826 608 aa11.76□□□□□ -0.53
VPS53-203ENST00000401468 RARSP54136 660 aaKnown RBP11.76□□□□□ -0.53
VPS53-203ENST00000401468 PPP1R15BQ5SWA1 713 aa11.76□□□□□ -0.53
VPS53-203ENST00000401468 STYK1Q6J9G0 422 aa11.76□□□□□ -0.53
VPS53-203ENST00000401468 CLEC4GQ6UXB4 293 aa11.76□□□□□ -0.53
VPS53-203ENST00000401468 TAOK3Q9H2K8 898 aa11.76□□□□□ -0.53
VPS53-203ENST00000401468 HYPKQ9NX55 129 aa11.76□□□□□ -0.53
VPS53-203ENST00000401468 CHPF2Q9P2E5 772 aa11.76□□□□□ -0.53
VPS53-203ENST00000401468 LTBP1Q14766 1721 aa11.75□□□□□ -0.53
VPS53-203ENST00000401468 POTECB2RU33 542 aa11.75□□□□□ -0.53
VPS53-203ENST00000401468 DDNO94850 711 aaPredicted RBP11.75□□□□□ -0.53
VPS53-203ENST00000401468 TPTE2Q6XPS3 522 aa11.75□□□□□ -0.53
VPS53-203ENST00000401468 MRPL50Q8N5N7 158 aaKnown RBP11.75□□□□□ -0.53
VPS53-203ENST00000401468 XAGE3Q8WTP9 111 aa11.75□□□□□ -0.53
VPS53-203ENST00000401468 SSH1Q8WYL5 1049 aa11.75□□□□□ -0.53
VPS53-203ENST00000401468 CNKSR1Q969H4 720 aa11.75□□□□□ -0.53
VPS53-203ENST00000401468 GLTPD2A6NH11 291 aa11.74□□□□□ -0.53
VPS53-203ENST00000401468 NPR1P16066 1061 aa11.74□□□□□ -0.53
VPS53-203ENST00000401468 PDE4AP27815 886 aa11.74□□□□□ -0.53
VPS53-203ENST00000401468 RTL5Q5HYW3 569 aaPredicted RBP11.74□□□□□ -0.53
VPS53-203ENST00000401468 POTEEQ6S8J3 1075 aa11.74□□□□□ -0.53
VPS53-203ENST00000401468 COPS6Q7L5N1 327 aa11.74□□□□□ -0.53
VPS53-203ENST00000401468 ZNF541Q9H0D2 1346 aa11.74□□□□□ -0.53
VPS53-203ENST00000401468 IBTKQ9P2D0 1353 aaPredicted RBP11.74□□□□□ -0.53
VPS53-203ENST00000401468 TRPM7Q96QT4 1865 aa11.74□□□□□ -0.53
VPS53-203ENST00000401468 NTSR2O95665 410 aa11.73□□□□□ -0.53
VPS53-203ENST00000401468 HCLS1P14317 486 aaPredicted RBP11.73□□□□□ -0.53
VPS53-203ENST00000401468 C7orf43Q8WVR3 580 aa11.73□□□□□ -0.53
VPS53-203ENST00000401468 STK31Q9BXU1 1019 aa11.73□□□□□ -0.53
VPS53-203ENST00000401468 PTPRCP08575 1304 aa11.72□□□□□ -0.53
VPS53-203ENST00000401468 ERVV-1B6SEH8 477 aa11.72□□□□□ -0.53
VPS53-203ENST00000401468 GIGYF2Q6Y7W6 1299 aaKnown RBP11.72□□□□□ -0.53
VPS53-203ENST00000401468 ZNF34Q8IZ26 560 aa11.72□□□□□ -0.53
VPS53-203ENST00000401468 RPGRQ92834 1020 aaKnown RBP11.72□□□□□ -0.53
VPS53-203ENST00000401468 RNF123Q5XPI4 1314 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 KIF16BQ96L93 1317 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 SCN9AQ15858 1988 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 ATP5J2-PTCD1G3V325 749 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 HSPA1AP0DMV8 641 aaKnown RBP11.71□□□□□ -0.53
VPS53-203ENST00000401468 HSPA1BP0DMV9 641 aaKnown RBP11.71□□□□□ -0.53
VPS53-203ENST00000401468 FLIIQ13045 1269 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 CCDC93Q567U6 631 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 G2E3Q7L622 706 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 RBM46Q8TBY0 533 aaKnown RBP11.71□□□□□ -0.53
VPS53-203ENST00000401468 OXER1Q8TDS5 423 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 ARHGAP45Q92619 1136 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 JARID2Q92833 1246 aaPredicted RBP11.71□□□□□ -0.53
VPS53-203ENST00000401468 PHAXQ9H814 394 aaKnown RBP11.71□□□□□ -0.53
VPS53-203ENST00000401468 RCAN3Q9UKA8 241 aa11.71□□□□□ -0.53
VPS53-203ENST00000401468 LRRC37AA6NMS7 1700 aa11.71□□□□□ -0.54
VPS53-203ENST00000401468 ARHGAP33O14559 1287 aa11.7□□□□□ -0.54
VPS53-203ENST00000401468 FAM161AQ3B820 660 aa11.7□□□□□ -0.54
VPS53-203ENST00000401468 PPP4R3BQ5MIZ7 849 aa11.7□□□□□ -0.54
VPS53-203ENST00000401468 NYXQ9GZU5 481 aa11.7□□□□□ -0.54
VPS53-203ENST00000401468 SMC4Q9NTJ3 1288 aa11.7□□□□□ -0.54
VPS53-203ENST00000401468 ADAMTSL1Q8N6G6 1762 aa11.69□□□□□ -0.54
VPS53-203ENST00000401468 KLRG2A4D1S0 409 aaPredicted RBP11.69□□□□□ -0.54
VPS53-203ENST00000401468 BCAR3O75815 825 aa11.69□□□□□ -0.54
VPS53-203ENST00000401468 VEGFAP15692 232 aaPredicted RBP11.69□□□□□ -0.54
VPS53-203ENST00000401468 FKBP4Q02790 459 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS53-203ENST00000401468 KSR2Q6VAB6 950 aa11.69□□□□□ -0.54
VPS53-203ENST00000401468 PLBD2Q8NHP8 589 aa11.69□□□□□ -0.54
VPS53-203ENST00000401468 LARP6Q9BRS8 491 aaKnown RBP11.69□□□□□ -0.54
VPS53-203ENST00000401468 SNED1Q8TER0 1413 aa11.69□□□□□ -0.54
VPS53-203ENST00000401468 ABCC4O15439 1325 aa11.68□□□□□ -0.54
VPS53-203ENST00000401468 LTBP3Q9NS15 1303 aa11.68□□□□□ -0.54
VPS53-203ENST00000401468 PPEF1O14829 653 aaPredicted RBP11.68□□□□□ -0.54
VPS53-203ENST00000401468 IARSP41252 1262 aaKnown RBP11.68□□□□□ -0.54
VPS53-203ENST00000401468 CRY2Q49AN0 593 aa11.68□□□□□ -0.54
VPS53-203ENST00000401468 EAPPQ56P03 285 aaPredicted RBP11.68□□□□□ -0.54
VPS53-203ENST00000401468 NLRP10Q86W26 655 aa11.68□□□□□ -0.54
VPS53-203ENST00000401468 UTP14AQ9BVJ6 771 aaKnown RBP11.68□□□□□ -0.54
VPS53-203ENST00000401468 BCL2L13Q9BXK5 485 aa11.68□□□□□ -0.54
VPS53-203ENST00000401468 PDZRN3Q9UPQ7 1066 aa11.68□□□□□ -0.54
VPS53-203ENST00000401468 GJA3Q9Y6H8 435 aa11.68□□□□□ -0.54
VPS53-203ENST00000401468 DUOX1Q9NRD9 1551 aa11.67□□□□□ -0.54
VPS53-203ENST00000401468 DDX58O95786 925 aaKnown RBP11.67□□□□□ -0.54
VPS53-203ENST00000401468 TRIM28Q13263 835 aaKnown RBP11.67□□□□□ -0.54
VPS53-203ENST00000401468 PPP1R42Q7Z4L9 355 aa11.67□□□□□ -0.54
VPS53-203ENST00000401468 SMC1BQ8NDV3 1235 aa11.67□□□□□ -0.54
VPS53-203ENST00000401468 FAM89AQ96GI7 184 aa11.67□□□□□ -0.54
VPS53-203ENST00000401468 DDX27Q96GQ7 796 aaKnown RBP11.67□□□□□ -0.54
VPS53-203ENST00000401468 TRMT112Q9UI30 125 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms