RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MCTP2Q6DN12 878 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 PLA2G4DQ86XP0 818 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 FAM212AQ96EL1 285 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 HYPKQ9NX55 129 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 TPCN1Q9ULQ1 816 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 NSD2O96028 1365 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 FRMD3A2A2Y4 597 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 GOLGA6CA6NDK9 693 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 GOLIM4O00461 696 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 GOLGA6DP0CG33 693 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 ADCK5Q3MIX3 580 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 CCDC102BQ68D86 513 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 WWC2Q6AWC2 1192 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 GOLGA6AQ9NYA3 693 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 GUCA1BQ9UMX6 200 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 SPTLC2O15270 562 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 MYL5Q02045 173 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 NMIQ13287 307 aaPredicted RBP10.67□□□□□ -0.7
COL28A1-201ENST00000399429 CC2D1AQ6P1N0 951 aaPredicted RBP10.67□□□□□ -0.7
COL28A1-201ENST00000399429 EFCAB13Q8IY85 973 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 BCAS4Q8TDM0 211 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 A0A1B0GUA9 196 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 TXLNAP40222 546 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 NUTM2GQ5VZR2 741 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 MMS22LQ6ZRQ5 1243 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 PPP2R2CQ9Y2T4 447 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 DDX58O95786 925 aaKnown RBP10.66□□□□□ -0.7
COL28A1-201ENST00000399429 CDC25BP30305 580 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 CHST3Q7LGC8 479 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 POTEDQ86YR6 584 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 RABGGTAQ92696 567 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 KCNG4Q8TDN1 519 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 RBM33Q96EV2 1170 aaKnown RBP10.66□□□□□ -0.7
COL28A1-201ENST00000399429 HINFPQ9BQA5 517 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 POLKQ9UBT6 870 aa10.66□□□□□ -0.7
COL28A1-201ENST00000399429 PLA2G4AP47712 749 aa10.65□□□□□ -0.7
COL28A1-201ENST00000399429 TTC19Q6DKK2 380 aaPredicted RBP10.65□□□□□ -0.7
COL28A1-201ENST00000399429 A0A087WUV0 522 aaPredicted RBP10.65□□□□□ -0.7
COL28A1-201ENST00000399429 PTPDC1A2A3K4 754 aa10.65□□□□□ -0.7
COL28A1-201ENST00000399429 PTH1RQ03431 593 aa10.65□□□□□ -0.7
COL28A1-201ENST00000399429 TAX1BP1Q86VP1 789 aa10.65□□□□□ -0.7
COL28A1-201ENST00000399429 MAGI1Q96QZ7 1491 aaPredicted RBP10.65□□□□□ -0.7
COL28A1-201ENST00000399429 HSF2BPO75031 334 aa10.65□□□□□ -0.7
COL28A1-201ENST00000399429 MAATS1Q7Z4T9 603 aa10.65□□□□□ -0.7
COL28A1-201ENST00000399429 CTCFLQ8NI51 663 aaPredicted RBP10.65□□□□□ -0.7
COL28A1-201ENST00000399429 GEMIN8Q9NWZ8 242 aaKnown RBP10.65□□□□□ -0.7
COL28A1-201ENST00000399429 SLC20A2Q08357 652 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 STIM1Q13586 685 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 OTUD7BQ6GQQ9 843 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 FTOQ9C0B1 505 aaKnown RBP eCLIP10.64□□□□□ -0.71
COL28A1-201ENST00000399429 MAGEC2Q9UBF1 373 aaPredicted RBP10.64□□□□□ -0.71
COL28A1-201ENST00000399429 CEP83Q9Y592 693 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 ANXA1P04083 346 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 GUCY2CP25092 1073 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 APOBRQ0VD83 1088 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 CCDC121Q6ZUS5 278 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 FAM227BQ96M60 508 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 PLEKHF1Q96S99 279 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 ZNF608Q9ULD9 1512 aaPredicted RBP10.64□□□□□ -0.71
COL28A1-201ENST00000399429 SOS1Q07889 1333 aaPredicted RBP10.64□□□□□ -0.71
COL28A1-201ENST00000399429 CCDC151A5D8V7 595 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 N4BP3O15049 544 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 STX17P56962 302 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 TADA2BQ86TJ2 420 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 CCDC82Q8N4S0 544 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 CXorf56Q9H5V9 222 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 PA2G4Q9UQ80 394 aaKnown RBP10.64□□□□□ -0.71
COL28A1-201ENST00000399429 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.64□□□□□ -0.71
COL28A1-201ENST00000399429 FHOD1Q9Y613 1164 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 PEX19P40855 299 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 LONRF3Q496Y0 759 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 DHX58Q96C10 678 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 USP28Q96RU2 1077 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 PHF23Q9BUL5 403 aaPredicted RBP10.64□□□□□ -0.71
COL28A1-201ENST00000399429 HMG20BQ9P0W2 317 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 LCMT1Q9UIC8 334 aa10.64□□□□□ -0.71
COL28A1-201ENST00000399429 DNMBPQ6XZF7 1577 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 GOLGA8BA8MQT2 603 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 DPCR1Q3MIW9 517 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 NCOA5Q9HCD5 579 aaKnown RBP10.63□□□□□ -0.71
COL28A1-201ENST00000399429 SAMM50Q9Y512 469 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 SLC27A2O14975 620 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 YEATS4O95619 227 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 FAM71BQ8TC56 605 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 KIAA1468Q9P260 1216 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 U3KPZ7 1027 aaPredicted RBP10.63□□□□□ -0.71
COL28A1-201ENST00000399429 NUP153P49790 1475 aaKnown RBP10.63□□□□□ -0.71
COL28A1-201ENST00000399429 NOS1P29475 1434 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 OPA1O60313 960 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 TUBBP07437 444 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 RPS6KB1P23443 525 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 ATP2B2Q01814 1243 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 HLTFQ14527 1009 aaKnown RBP eCLIP10.63□□□□□ -0.71
COL28A1-201ENST00000399429 B4GALNT4Q76KP1 1039 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 CNPY4Q8N129 248 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 DYDC1Q8WWB3 177 aa10.63□□□□□ -0.71
COL28A1-201ENST00000399429 C14orf93Q9H972 538 aaKnown RBP10.63□□□□□ -0.71
COL28A1-201ENST00000399429 PHLPP2Q6ZVD8 1323 aa10.62□□□□□ -0.71
COL28A1-201ENST00000399429 EIF2AK4Q9P2K8 1649 aaKnown RBP10.62□□□□□ -0.71
COL28A1-201ENST00000399429 PI4KAP2A4QPH2 592 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms