RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 SLC10A3P09131 477 aa21.02■□□□□ 0.96
CUX2-202ENST00000397643 KIF4BQ2VIQ3 1234 aa21.02■□□□□ 0.96
CUX2-202ENST00000397643 RBM26Q5T8P6 1007 aaKnown RBP21.02■□□□□ 0.96
CUX2-202ENST00000397643 C2orf69Q8N8R5 385 aa21.02■□□□□ 0.96
CUX2-202ENST00000397643 CCDC102AQ96A19 550 aa21.02■□□□□ 0.96
CUX2-202ENST00000397643 DCPSQ96C86 337 aaKnown RBP21.02■□□□□ 0.96
CUX2-202ENST00000397643 GGA3Q9NZ52 723 aa21.02■□□□□ 0.96
CUX2-202ENST00000397643 ZNF609O15014 1411 aa21.02■□□□□ 0.96
CUX2-202ENST00000397643 VIL1P09327 827 aaKnown RBP21.01■□□□□ 0.95
CUX2-202ENST00000397643 HOXB7P09629 217 aa21.01■□□□□ 0.95
CUX2-202ENST00000397643 ZNF157P51786 506 aaPredicted RBP21.01■□□□□ 0.95
CUX2-202ENST00000397643 TRIM28Q13263 835 aaKnown RBP21.01■□□□□ 0.95
CUX2-202ENST00000397643 RTL5Q5HYW3 569 aaPredicted RBP21.01■□□□□ 0.95
CUX2-202ENST00000397643 EYA3Q99504 573 aa21.01■□□□□ 0.95
CUX2-202ENST00000397643 RNF186Q9NXI6 227 aa21.01■□□□□ 0.95
CUX2-202ENST00000397643 IRS4O14654 1257 aaPredicted RBP21■□□□□ 0.95
CUX2-202ENST00000397643 RPS8P62241 208 aaKnown RBP21■□□□□ 0.95
CUX2-202ENST00000397643 CCDC146Q8IYE0 955 aa21■□□□□ 0.95
CUX2-202ENST00000397643 PODXL2Q9NZ53 605 aa21■□□□□ 0.95
CUX2-202ENST00000397643 DBF4Q9UBU7 674 aaPredicted RBP21■□□□□ 0.95
CUX2-202ENST00000397643 AKAP11Q9UKA4 1901 aa21■□□□□ 0.95
CUX2-202ENST00000397643 PSME4Q14997 1843 aa20.99■□□□□ 0.95
CUX2-202ENST00000397643 NEUROD2Q15784 382 aa20.99■□□□□ 0.95
CUX2-202ENST00000397643 CDCA5Q96FF9 252 aa20.99■□□□□ 0.95
CUX2-202ENST00000397643 ZNF316A6NFI3 1004 aaPredicted RBP20.98■□□□□ 0.95
CUX2-202ENST00000397643 TRPA1O75762 1119 aa20.98■□□□□ 0.95
CUX2-202ENST00000397643 ZNF280AP59817 542 aaPredicted RBP20.98■□□□□ 0.95
CUX2-202ENST00000397643 SULF1Q8IWU6 871 aa20.98■□□□□ 0.95
CUX2-202ENST00000397643 CSRNP1Q96S65 589 aa20.98■□□□□ 0.95
CUX2-202ENST00000397643 SEC31BQ9NQW1 1179 aa20.98■□□□□ 0.95
CUX2-202ENST00000397643 LAS1LQ9Y4W2 734 aaKnown RBP20.98■□□□□ 0.95
CUX2-202ENST00000397643 RALBP1Q15311 655 aa20.97■□□□□ 0.95
CUX2-202ENST00000397643 RASAL3Q86YV0 1011 aa20.97■□□□□ 0.95
CUX2-202ENST00000397643 HYPKQ9NX55 129 aa20.97■□□□□ 0.95
CUX2-202ENST00000397643 PAPPA2Q9BXP8 1791 aa20.96■□□□□ 0.95
CUX2-202ENST00000397643 UFL1O94874 794 aa20.96■□□□□ 0.95
CUX2-202ENST00000397643 SOX10P56693 466 aa20.96■□□□□ 0.95
CUX2-202ENST00000397643 ZC3H12CQ9C0D7 883 aaKnown RBP20.96■□□□□ 0.95
CUX2-202ENST00000397643 ANGEL2Q5VTE6 544 aaKnown RBP20.95■□□□□ 0.94
CUX2-202ENST00000397643 ZBTB38Q8NAP3 1195 aaPredicted RBP20.95■□□□□ 0.94
CUX2-202ENST00000397643 GMLQ99445 158 aa20.95■□□□□ 0.94
CUX2-202ENST00000397643 DUSP27Q5VZP5 1158 aa20.94■□□□□ 0.94
CUX2-202ENST00000397643 RSBN1LQ6PCB5 846 aaPredicted RBP20.94■□□□□ 0.94
CUX2-202ENST00000397643 RUNDC1Q96C34 613 aa20.94■□□□□ 0.94
CUX2-202ENST00000397643 SCARF1Q14162 830 aa20.93■□□□□ 0.94
CUX2-202ENST00000397643 AGBL3Q8NEM8 1001 aa20.93■□□□□ 0.94
CUX2-202ENST00000397643 PCDH10Q9P2E7 1040 aa20.93■□□□□ 0.94
CUX2-202ENST00000397643 GGA1Q9UJY5 639 aa20.93■□□□□ 0.94
CUX2-202ENST00000397643 CTU1Q7Z7A3 348 aaKnown RBP20.92■□□□□ 0.94
CUX2-202ENST00000397643 MBIPQ9NS73 344 aa20.92■□□□□ 0.94
CUX2-202ENST00000397643 ANKIB1Q9P2G1 1089 aa20.92■□□□□ 0.94
CUX2-202ENST00000397643 ZNF646O15015 1829 aaPredicted RBP20.92■□□□□ 0.94
CUX2-202ENST00000397643 FKBP1BP68106 108 aa20.91■□□□□ 0.94
CUX2-202ENST00000397643 PITPNM2Q9BZ72 1349 aa20.91■□□□□ 0.94
CUX2-202ENST00000397643 PHAXQ9H814 394 aaKnown RBP20.91■□□□□ 0.94
CUX2-202ENST00000397643 MYBBP1AQ9BQG0 1328 aaKnown RBP20.9■□□□□ 0.94
CUX2-202ENST00000397643 ZNF853P0CG23 659 aa20.9■□□□□ 0.94
CUX2-202ENST00000397643 MOB2Q70IA6 237 aa20.9■□□□□ 0.94
CUX2-202ENST00000397643 RIC3Q7Z5B4 369 aa20.9■□□□□ 0.94
CUX2-202ENST00000397643 REM2Q8IYK8 340 aaPredicted RBP20.9■□□□□ 0.94
CUX2-202ENST00000397643 MYOZ2Q9NPC6 264 aa20.9■□□□□ 0.94
CUX2-202ENST00000397643 XDHP47989 1333 aa20.89■□□□□ 0.93
CUX2-202ENST00000397643 PCCAP05165 728 aaPredicted RBP20.89■□□□□ 0.93
CUX2-202ENST00000397643 GOLGA2Q08379 1002 aa20.89■□□□□ 0.93
CUX2-202ENST00000397643 CCDC152Q4G0S7 254 aa20.89■□□□□ 0.93
CUX2-202ENST00000397643 MYD88Q99836 296 aa20.89■□□□□ 0.93
CUX2-202ENST00000397643 SCAF8Q9UPN6 1271 aaKnown RBP20.89■□□□□ 0.93
CUX2-202ENST00000397643 WTIPA6NIX2 430 aaPredicted RBP20.88■□□□□ 0.93
CUX2-202ENST00000397643 G3V3G9 751 aa20.88■□□□□ 0.93
CUX2-202ENST00000397643 PDE8AO60658 829 aa20.88■□□□□ 0.93
CUX2-202ENST00000397643 USP17L8P0C7I0 530 aa20.88■□□□□ 0.93
CUX2-202ENST00000397643 DCAF8Q5TAQ9 597 aa20.88■□□□□ 0.93
CUX2-202ENST00000397643 CCDC191Q8NCU4 936 aa20.88■□□□□ 0.93
CUX2-202ENST00000397643 JARID2Q92833 1246 aaPredicted RBP20.88■□□□□ 0.93
CUX2-202ENST00000397643 CCDC85AQ96PX6 553 aaPredicted RBP20.88■□□□□ 0.93
CUX2-202ENST00000397643 HSP90B1P14625 803 aaKnown RBP20.87■□□□□ 0.93
CUX2-202ENST00000397643 ADAMTS8Q9UP79 889 aa20.87■□□□□ 0.93
CUX2-202ENST00000397643 HPS5Q9UPZ3 1129 aa20.87■□□□□ 0.93
CUX2-202ENST00000397643 USP17L3A6NCW0 530 aa20.86■□□□□ 0.93
CUX2-202ENST00000397643 USP17L4A6NCW7 530 aa20.86■□□□□ 0.93
CUX2-202ENST00000397643 USP17L1Q7RTZ2 530 aa20.86■□□□□ 0.93
CUX2-202ENST00000397643 PODNQ7Z5L7 613 aa20.86■□□□□ 0.93
CUX2-202ENST00000397643 CWC25Q9NXE8 425 aaPredicted RBP20.85■□□□□ 0.93
CUX2-202ENST00000397643 MED23Q9ULK4 1368 aa20.85■□□□□ 0.93
CUX2-202ENST00000397643 UBE2Q2LH0YL09 131 aa20.84■□□□□ 0.93
CUX2-202ENST00000397643 ATP2B4P23634 1241 aa20.84■□□□□ 0.93
CUX2-202ENST00000397643 WDR43Q15061 677 aaKnown RBP eCLIP20.84■□□□□ 0.93
CUX2-202ENST00000397643 NBPF9Q3BBW0 867 aa20.84■□□□□ 0.93
CUX2-202ENST00000397643 PRAMEF18Q5VWM3 479 aa20.84■□□□□ 0.93
CUX2-202ENST00000397643 ANKRD18AQ8IVF6 992 aa20.84■□□□□ 0.93
CUX2-202ENST00000397643 ZNF296Q8WUU4 475 aaPredicted RBP20.84■□□□□ 0.93
CUX2-202ENST00000397643 METTL22Q9BUU2 404 aaPredicted RBP20.84■□□□□ 0.93
CUX2-202ENST00000397643 DACT2Q5SW24 774 aa20.83■□□□□ 0.93
CUX2-202ENST00000397643 PRPF38BQ5VTL8 546 aaKnown RBP20.83■□□□□ 0.93
CUX2-202ENST00000397643 MXD3Q9BW11 206 aa20.83■□□□□ 0.93
CUX2-202ENST00000397643 IFT57Q9NWB7 429 aa20.83■□□□□ 0.93
CUX2-202ENST00000397643 SPEF2Q9C093 1822 aa20.83■□□□□ 0.92
CUX2-202ENST00000397643 ELL2O00472 640 aaPredicted RBP20.82■□□□□ 0.92
CUX2-202ENST00000397643 TBC1D8O95759 1140 aa20.82■□□□□ 0.92
CUX2-202ENST00000397643 CTSWP56202 376 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms