RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 SIK1P57059 783 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 TXLNBQ8N3L3 684 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 SPRYD3Q8NCJ5 442 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 ZC3H12CQ9C0D7 883 aaKnown RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 DENND2AQ9ULE3 1009 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 MFSD6Q6ZSS7 791 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 DHX32Q7L7V1 743 aaKnown RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 C8orf37Q96NL8 207 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 DEKP35659 375 aaKnown RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 NASPP49321 788 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 UBE2HP62256 183 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 CATIPQ7Z7H3 387 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 APPBP2Q92624 585 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 EYA3Q99504 573 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 CRNKL1Q9BZJ0 848 aaKnown RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC171Q6TFL3 1326 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 RPAP1Q9BWH6 1393 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 CHMLP26374 656 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 CHD4Q14839 1912 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 CARMIL3Q8ND23 1372 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 IRS4O14654 1257 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 SLC39A6Q13433 755 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 TMEM87BQ96K49 555 aa3.96□□□□□ -1.78
VPS13C-203ENST00000395896 COL3A1P02461 1466 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 SETD1AO15047 1707 aaKnown RBP3.96□□□□□ -1.78
VPS13C-203ENST00000395896 CCP110O43303 1012 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 MARCH6O60337 910 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 KIF20AO95235 890 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 NLGN1Q8N2Q7 840 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 PDE8BO95263 885 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 NKX1-1Q15270 411 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 TRAPPC3LQ5T215 181 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 CC2D2BQ6DHV5 1058 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 MYH3P11055 1940 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 CALML3P27482 149 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 SSFA2P28290 1259 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 DSCC1Q9BVC3 393 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 BICC1Q9H694 974 aaKnown RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 SHPRHQ149N8 1683 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 GOLIM4O00461 696 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 STIM1Q13586 685 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 SLC27A3Q5K4L6 730 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 ZNF804AQ7Z570 1209 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 MTERF4Q7Z6M4 381 aaKnown RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 LGR6Q9HBX8 967 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 FAM13BQ9NYF5 915 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 MKNK2Q9HBH9 465 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC87Q9NVE4 849 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 HLA-DOAP06340 250 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 OLFM4Q6UX06 510 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 CNBD1Q8NA66 436 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 MST1RQ04912 1400 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 UBE3CQ15386 1083 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC148Q8NFR7 591 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 KCNG4Q8TDN1 519 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 LUC7LQ9NQ29 371 aaKnown RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 RAI14Q9P0K7 980 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 SLC12A7Q9Y666 1083 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 ATP5J2-PTCD1G3V325 749 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 CWF19L2Q2TBE0 894 aaKnown RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 FAM177A1Q8N128 213 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 C8orf76Q96K31 380 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 STX6O43752 255 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 TNNI3KQ59H18 835 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 SPATA32Q96LK8 384 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 GZF1Q9H116 711 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 DDX19AQ9NUU7 478 aaKnown RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 FPGT-TNNI3KV9GXZ4 949 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 MYO1BO43795 1136 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 UNC5CLQ8IV45 518 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 BMP2KQ9NSY1 1161 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 USP21Q9UK80 565 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 PNMA2Q9UL42 364 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 TOPAZ1Q8N9V7 1692 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 SLC9C2Q5TAH2 1124 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 SOGA3Q5TF21 947 aa3.95□□□□□ -1.78
VPS13C-203ENST00000395896 DHX37Q8IY37 1157 aaKnown RBP3.95□□□□□ -1.78
VPS13C-203ENST00000395896 HSPA4P34932 840 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 MCTP2Q6DN12 878 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 SEC63Q9UGP8 760 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 KIAA0100Q14667 2235 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 A0A1B0GUL7 405 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 ME1P48163 572 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 STK38Q15208 465 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 NUTM1Q86Y26 1132 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CCNL1Q9UK58 526 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 USP16Q9Y5T5 823 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CDHR2Q9BYE9 1310 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 IARSP41252 1262 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 NBPF14Q5TI25 921 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CEP57L1Q8IYX8 460 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC8Q9H0W5 538 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 ZNF335Q9H4Z2 1342 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 DCAF8L1A6NGE4 600 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 BRAPQ7Z569 592 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 ZNF444Q8N0Y2 327 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 COL15A1P39059 1388 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 PNMA6EA0A0J9YXQ4 647 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 BBOX1O75936 387 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms