RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ANKIB1Q9P2G1 1089 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 RCAN3Q9UKA8 241 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 MINPP1Q9UNW1 487 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 HDAC5Q9UQL6 1122 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 TBC1D16Q8TBP0 767 aa27.27■■□□□ 1.96
CLN3-207ENST00000395653 POLLQ9UGP5 575 aa27.27■■□□□ 1.96
CLN3-207ENST00000395653 FZD9O00144 591 aa27.26■■□□□ 1.95
CLN3-207ENST00000395653 MEIS3Q99687 375 aa27.26■■□□□ 1.95
CLN3-207ENST00000395653 C6orf229H3BNL8 230 aa27.25■■□□□ 1.95
CLN3-207ENST00000395653 FTSJ3Q8IY81 847 aaKnown RBP27.25■■□□□ 1.95
CLN3-207ENST00000395653 NIM1KQ8IY84 436 aa27.25■■□□□ 1.95
CLN3-207ENST00000395653 DZIP1LQ8IYY4 767 aaKnown RBP27.25■■□□□ 1.95
CLN3-207ENST00000395653 EYA3Q99504 573 aa27.25■■□□□ 1.95
CLN3-207ENST00000395653 GGA1Q9UJY5 639 aa27.25■■□□□ 1.95
CLN3-207ENST00000395653 WASHC4Q2M389 1173 aa27.24■■□□□ 1.95
CLN3-207ENST00000395653 TMEM57Q8N5G2 664 aa27.24■■□□□ 1.95
CLN3-207ENST00000395653 UFL1O94874 794 aa27.24■■□□□ 1.95
CLN3-207ENST00000395653 GNAI3P08754 354 aa27.24■■□□□ 1.95
CLN3-207ENST00000395653 TAF7LQ5H9L4 462 aa27.24■■□□□ 1.95
CLN3-207ENST00000395653 ATP2B4P23634 1241 aa27.23■■□□□ 1.95
CLN3-207ENST00000395653 ANKRD2Q9GZV1 360 aa27.23■■□□□ 1.95
CLN3-207ENST00000395653 ZNF594Q96JF6 807 aaPredicted RBP27.22■■□□□ 1.95
CLN3-207ENST00000395653 NMRK2Q9NPI5 230 aa27.22■■□□□ 1.95
CLN3-207ENST00000395653 ZNF541Q9H0D2 1346 aa27.22■■□□□ 1.95
CLN3-207ENST00000395653 EIF6P56537 245 aaKnown RBP27.21■■□□□ 1.95
CLN3-207ENST00000395653 LDHAL6AQ6ZMR3 332 aa27.21■■□□□ 1.95
CLN3-207ENST00000395653 ZNRF3Q9ULT6 936 aa27.21■■□□□ 1.95
CLN3-207ENST00000395653 LRRFIP2Q9Y608 721 aaKnown RBP27.21■■□□□ 1.95
CLN3-207ENST00000395653 WDR90Q96KV7 1748 aa27.2■■□□□ 1.94
CLN3-207ENST00000395653 CHRNDQ07001 517 aa27.2■■□□□ 1.94
CLN3-207ENST00000395653 ZC3H12CQ9C0D7 883 aaKnown RBP27.2■■□□□ 1.94
CLN3-207ENST00000395653 DDNO94850 711 aaPredicted RBP27.19■■□□□ 1.94
CLN3-207ENST00000395653 MS4A1P11836 297 aa27.19■■□□□ 1.94
CLN3-207ENST00000395653 RLBP1P12271 317 aa27.19■■□□□ 1.94
CLN3-207ENST00000395653 LEMD3Q9Y2U8 911 aa27.19■■□□□ 1.94
CLN3-207ENST00000395653 KIF3CO14782 793 aa27.18■■□□□ 1.94
CLN3-207ENST00000395653 RIMBP2O15034 1052 aa27.18■■□□□ 1.94
CLN3-207ENST00000395653 GPC2Q8N158 579 aa27.18■■□□□ 1.94
CLN3-207ENST00000395653 GPR101Q96P66 508 aaPredicted RBP27.18■■□□□ 1.94
CLN3-207ENST00000395653 CNNM1Q9NRU3 951 aa27.18■■□□□ 1.94
CLN3-207ENST00000395653 RRAGCQ9HB90 399 aa27.17■■□□□ 1.94
CLN3-207ENST00000395653 MED23Q9ULK4 1368 aa27.17■■□□□ 1.94
CLN3-207ENST00000395653 L3MBTL3Q96JM7 780 aaPredicted RBP27.16■■□□□ 1.94
CLN3-207ENST00000395653 A0A1B0GUL6 1792 aa27.16■■□□□ 1.94
CLN3-207ENST00000395653 ITPRIPQ8IWB1 547 aa27.16■■□□□ 1.94
CLN3-207ENST00000395653 ZNF804BA4D1E1 1349 aa27.16■■□□□ 1.94
CLN3-207ENST00000395653 GNAI2P04899 355 aa27.15■■□□□ 1.94
CLN3-207ENST00000395653 VEGFAP15692 232 aaPredicted RBP27.15■■□□□ 1.94
CLN3-207ENST00000395653 RFX5P48382 616 aaPredicted RBP27.15■■□□□ 1.94
CLN3-207ENST00000395653 DBNDD1Q9H9R9 158 aa27.15■■□□□ 1.94
CLN3-207ENST00000395653 WTIPA6NIX2 430 aaPredicted RBP27.14■■□□□ 1.93
CLN3-207ENST00000395653 PANK1Q8TE04 598 aa27.14■■□□□ 1.93
CLN3-207ENST00000395653 PUS3Q9BZE2 481 aaKnown RBP27.14■■□□□ 1.93
CLN3-207ENST00000395653 RIPOR2Q9Y4F9 1068 aa27.14■■□□□ 1.93
CLN3-207ENST00000395653 MROH5Q6ZUA9 1318 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 YDJCA8MPS7 323 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 POTECB2RU33 542 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 ECE2O60344 883 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 KCNJ4P48050 445 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 CXCL9Q07325 125 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 MTX1Q13505 466 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.13■■□□□ 1.93
CLN3-207ENST00000395653 GJA3Q9Y6H8 435 aa27.13■■□□□ 1.93
CLN3-207ENST00000395653 TAF5LO75529 589 aa27.12■■□□□ 1.93
CLN3-207ENST00000395653 PTPN12Q05209 780 aaKnown RBP27.12■■□□□ 1.93
CLN3-207ENST00000395653 DOK7Q18PE1 504 aa27.12■■□□□ 1.93
CLN3-207ENST00000395653 CIAPIN1Q6FI81 312 aa27.12■■□□□ 1.93
CLN3-207ENST00000395653 HELBQ8NG08 1087 aaPredicted RBP27.12■■□□□ 1.93
CLN3-207ENST00000395653 KLHDC4Q8TBB5 520 aa27.12■■□□□ 1.93
CLN3-207ENST00000395653 G3V3G9 751 aa27.11■■□□□ 1.93
CLN3-207ENST00000395653 ZBTB7BO15156 539 aaPredicted RBP27.11■■□□□ 1.93
CLN3-207ENST00000395653 DCAF8Q5TAQ9 597 aa27.11■■□□□ 1.93
CLN3-207ENST00000395653 SCN4AP35499 1836 aa27.1■■□□□ 1.93
CLN3-207ENST00000395653 IQCA1LA6NCM1 817 aa27.1■■□□□ 1.93
CLN3-207ENST00000395653 PLIN1O60240 522 aa27.1■■□□□ 1.93
CLN3-207ENST00000395653 TNIP1Q15025 636 aa27.1■■□□□ 1.93
CLN3-207ENST00000395653 LRRC24Q50LG9 513 aa27.1■■□□□ 1.93
CLN3-207ENST00000395653 FBXO3Q9UK99 471 aa27.1■■□□□ 1.93
CLN3-207ENST00000395653 RAD17O75943 681 aa27.09■■□□□ 1.93
CLN3-207ENST00000395653 EYA2O00167 538 aa27.08■■□□□ 1.93
CLN3-207ENST00000395653 C15orf52Q6ZUT6 534 aaKnown RBP27.08■■□□□ 1.93
CLN3-207ENST00000395653 PODNQ7Z5L7 613 aa27.08■■□□□ 1.93
CLN3-207ENST00000395653 C16orf71Q8IYS4 520 aaPredicted RBP27.08■■□□□ 1.93
CLN3-207ENST00000395653 SRGAP3O43295 1099 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 TOMM70O94826 608 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 TXNRD3Q86VQ6 643 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 COPRSQ9NQ92 184 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 IRS2Q9Y4H2 1338 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 SNAP23O00161 211 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 KLRK1P26718 216 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 UBE4AQ14139 1066 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 PDE3AQ14432 1141 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 MVPQ14764 893 aaKnown RBP27.07■■□□□ 1.92
CLN3-207ENST00000395653 METTL24Q5JXM2 366 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 COA1Q9GZY4 146 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 HACL1Q9UJ83 578 aa27.07■■□□□ 1.92
CLN3-207ENST00000395653 CIAO1O76071 339 aa27.06■■□□□ 1.92
CLN3-207ENST00000395653 SCNN1DP51172 638 aa27.06■■□□□ 1.92
CLN3-207ENST00000395653 VGLL2Q8N8G2 317 aa27.06■■□□□ 1.92
CLN3-207ENST00000395653 DDX19BQ9UMR2 479 aa27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms