RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 RNF41Q9H4P4 317 aaPredicted RBP15.15■□□□□ 0.02
USP49-203ENST00000394253 NOB1Q9ULX3 412 aaKnown RBP15.15■□□□□ 0.02
USP49-203ENST00000394253 NOLC1Q14978 699 aaKnown RBP eCLIP15.15■□□□□ 0.02
USP49-203ENST00000394253 DRC3Q9H069 523 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 GIMAP4Q9NUV9 329 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 ATP2A3Q93084 1043 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 ERMNQ8TAM6 284 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 TBCAO75347 108 aaKnown RBP15.15■□□□□ 0.02
USP49-203ENST00000394253 BMP15O95972 392 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 RPAINQ86UA6 219 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 SPATS2Q86XZ4 545 aaKnown RBP15.15■□□□□ 0.02
USP49-203ENST00000394253 WDR46O15213 610 aaKnown RBP15.14■□□□□ 0.01
USP49-203ENST00000394253 OPHN1O60890 802 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 UBA7P41226 1012 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 TUBB2AQ13885 445 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 RASEFQ8IZ41 740 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 TUBB2BQ9BVA1 445 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 TTC16Q8NEE8 873 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 GOLGA6CA6NDK9 693 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 TXNDC9O14530 226 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 GOLGA6DP0CG33 693 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 GOLGA6AQ9NYA3 693 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 CCDC25Q86WR0 208 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 WDR78Q5VTH9 848 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 RNF216Q9NWF9 866 aaPredicted RBP15.14■□□□□ 0.01
USP49-203ENST00000394253 TPX2Q9ULW0 747 aaKnown RBP15.14■□□□□ 0.01
USP49-203ENST00000394253 ZNF428Q96B54 188 aa15.14■□□□□ 0.01
USP49-203ENST00000394253 PPFIA3O75145 1194 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 NAPBQ9H115 298 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 SPECC1L-ADORA2AF8WAN1 911 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 PLCB3Q01970 1234 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 FAM160A1Q05DH4 1040 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 TTF1Q15361 905 aaPredicted RBP15.13■□□□□ 0.01
USP49-203ENST00000394253 BICDL1Q6ZP65 573 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 CCDC65Q8IXS2 484 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 SDCCAG3Q96C92 435 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 PSMD6Q15008 389 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 SIL1Q9H173 461 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 TWISTNBQ3B726 338 aaPredicted RBP15.13■□□□□ 0.01
USP49-203ENST00000394253 HAUS7Q99871 368 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 LIMCH1Q9UPQ0 1083 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 TERF1P54274 439 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 GABPB1Q06547 395 aaPredicted RBP15.13■□□□□ 0.01
USP49-203ENST00000394253 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.13■□□□□ 0.01
USP49-203ENST00000394253 MKNK2Q9HBH9 465 aa15.13■□□□□ 0.01
USP49-203ENST00000394253 ITIH3Q06033 890 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 IFT81Q8WYA0 676 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 RUFY4Q6ZNE9 571 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 C1orf115Q9H7X2 142 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 ANKRD12Q6UB98 2062 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 SYT1P21579 422 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 EEF2P13639 858 aaKnown RBP15.12■□□□□ 0.01
USP49-203ENST00000394253 PHEXP78562 749 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 ANKFY1Q9P2R3 1169 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 SATB2Q9UPW6 733 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 DHX29Q7Z478 1369 aaKnown RBP15.12■□□□□ 0.01
USP49-203ENST00000394253 ATF7IPQ6VMQ6 1270 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 MINK1Q8N4C8 1332 aaPredicted RBP15.12■□□□□ 0.01
USP49-203ENST00000394253 CEP104O60308 925 aa15.12■□□□□ 0.01
USP49-203ENST00000394253 HPDP32754 393 aaPredicted RBP15.11■□□□□ 0.01
USP49-203ENST00000394253 STAC3Q96MF2 364 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 PAXIP1Q6ZW49 1069 aaPredicted RBP15.11■□□□□ 0.01
USP49-203ENST00000394253 HOMEZQ8IX15 550 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 GLRX3O76003 335 aaKnown RBP15.11■□□□□ 0.01
USP49-203ENST00000394253 MAN1A2O60476 641 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 SRGAP3O43295 1099 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 ARMC9Q7Z3E5 817 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 PNISRQ8TF01 805 aaKnown RBP15.11■□□□□ 0.01
USP49-203ENST00000394253 HDGFL1Q5TGJ6 251 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 SMIM23A6NLE4 172 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 HIP1RO75146 1068 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 SEL1L2Q5TEA6 688 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 AKNAQ7Z591 1439 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 SLF2Q8IX21 1173 aa15.11■□□□□ 0.01
USP49-203ENST00000394253 HELBQ8NG08 1087 aaPredicted RBP15.11■□□□□ 0.01
USP49-203ENST00000394253 KLHL40Q2TBA0 621 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 STK10O94804 968 aaKnown RBP15.1■□□□□ 0.01
USP49-203ENST00000394253 NUTM2DQ5VT03 806 aaPredicted RBP15.1■□□□□ 0.01
USP49-203ENST00000394253 USP6NLQ92738 828 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 LRRC23Q53EV4 343 aaPredicted RBP15.1■□□□□ 0.01
USP49-203ENST00000394253 LCA5Q86VQ0 697 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 CEP126Q9P2H0 1117 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 STAT6P42226 847 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 PLEKHO1Q53GL0 409 aaPredicted RBP15.1■□□□□ 0.01
USP49-203ENST00000394253 NUTM1Q86Y26 1132 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 ATICP31939 592 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 FERMT3Q86UX7 667 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 KCNG4Q8TDN1 519 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 NRBF2Q96F24 287 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 LRRD1A4D1F6 860 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 SYKP43405 635 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 CCDC124Q96CT7 223 aaKnown RBP15.1■□□□□ 0.01
USP49-203ENST00000394253 PSMA7O14818 248 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 IFT20Q8IY31 132 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 POLE3Q9NRF9 147 aa15.1■□□□□ 0.01
USP49-203ENST00000394253 MICAL3Q7RTP6 2002 aa15.09■□□□□ 0.01
USP49-203ENST00000394253 KRT3P12035 628 aa15.09■□□□□ 0.01
USP49-203ENST00000394253 KLHDC4Q8TBB5 520 aa15.09■□□□□ 0.01
USP49-203ENST00000394253 CCDC42Q96M95 316 aa15.09■□□□□ 0.01
USP49-203ENST00000394253 KAT6AQ92794 2004 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms