RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 DBNLQ9UJU6 430 aaKnown RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 TRPM3Q9HCF6 1732 aaPredicted RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 ZNF142P52746 1687 aaPredicted RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 SPEF2Q9C093 1822 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 PRAMEF22A3QJZ6 481 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 GOLGA6L19H0YKK7 550 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 RBM6P78332 1123 aaKnown RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 PTPN12Q05209 780 aaKnown RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 DMTNQ08495 405 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 AIMP1Q12904 312 aaKnown RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 IQCB1Q15051 598 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 ANKRD13DQ6ZTN6 518 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 DHX32Q7L7V1 743 aaKnown RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 FBXL16Q8N461 479 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 KBTBD3Q8NAB2 608 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 RGS22Q8NE09 1264 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 XAGE3Q8WTP9 111 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 KCND1Q9NSA2 647 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 CLIP2Q9UDT6 1046 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 CHMP3Q9Y3E7 222 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 TAF6LQ9Y6J9 622 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 ZNF609O15014 1411 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 KIF1AQ12756 1690 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 CYP21A2P08686 494 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 HSP90B1P14625 803 aaKnown RBP11.74□□□□□ -0.53
COL17A1-203ENST00000393211 ADD1P35611 737 aaKnown RBP11.74□□□□□ -0.53
COL17A1-203ENST00000393211 STK3Q13188 491 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 PPP4R3BQ5MIZ7 849 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 COPS6Q7L5N1 327 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 TCEANC2Q96MN5 208 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 MYD88Q99836 296 aa11.74□□□□□ -0.53
COL17A1-203ENST00000393211 AFDNP55196 1824 aaKnown RBP11.74□□□□□ -0.53
COL17A1-203ENST00000393211 ZBTB7CA1YPR0 619 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 JAK2O60674 1132 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 SNRPA1P09661 255 aaKnown RBP11.73□□□□□ -0.53
COL17A1-203ENST00000393211 EXOSC10Q01780 885 aaKnown RBP11.73□□□□□ -0.53
COL17A1-203ENST00000393211 TFCP2Q12800 502 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 COL9A3Q14050 684 aaPredicted RBP11.73□□□□□ -0.53
COL17A1-203ENST00000393211 EPHA10Q5JZY3 1008 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 CCDC73Q6ZRK6 1079 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 LRP10Q7Z4F1 713 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 ZNF274Q96GC6 653 aaPredicted RBP11.73□□□□□ -0.53
COL17A1-203ENST00000393211 DNAJC25Q9H1X3 360 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 ANO10Q9NW15 660 aa11.73□□□□□ -0.53
COL17A1-203ENST00000393211 KIF2AO00139 706 aaPredicted RBP11.72□□□□□ -0.53
COL17A1-203ENST00000393211 TNNT1P13805 278 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 FAM160A1Q05DH4 1040 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 SCRN1Q12765 414 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 CCAR1Q8IX12 1150 aaKnown RBP11.72□□□□□ -0.53
COL17A1-203ENST00000393211 NSUN7Q8NE18 718 aaKnown RBP11.72□□□□□ -0.53
COL17A1-203ENST00000393211 RAPGEF4Q8WZA2 1011 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 NAT10Q9H0A0 1025 aaKnown RBP11.72□□□□□ -0.53
COL17A1-203ENST00000393211 LAMA4Q16363 1823 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 ERBB3P21860 1342 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 SALL1Q9NSC2 1324 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 ARFGEF2Q9Y6D5 1785 aa11.72□□□□□ -0.53
COL17A1-203ENST00000393211 KDM6AO15550 1401 aaPredicted RBP11.72□□□□□ -0.53
COL17A1-203ENST00000393211 KINO60870 393 aaKnown RBP11.71□□□□□ -0.53
COL17A1-203ENST00000393211 ZSCAN20P17040 1043 aaPredicted RBP11.71□□□□□ -0.53
COL17A1-203ENST00000393211 GSDMDP57764 484 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 FGD1P98174 961 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 LRRC8AQ8IWT6 810 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 CCDC112Q8NEF3 446 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 ENGASEQ8NFI3 743 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 KLHDC4Q8TBB5 520 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.71□□□□□ -0.53
COL17A1-203ENST00000393211 CACTINQ8WUQ7 758 aaKnown RBP11.71□□□□□ -0.53
COL17A1-203ENST00000393211 TSC1Q92574 1164 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 CGNQ9P2M7 1197 aaKnown RBP11.71□□□□□ -0.53
COL17A1-203ENST00000393211 LAMB4A4D0S4 1761 aa11.71□□□□□ -0.53
COL17A1-203ENST00000393211 A0A1W2PQ27 194 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 A0A1W2PQ64 194 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 A0A1W2PQD8 194 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 PHKG2P15735 406 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 TATP17735 454 aaPredicted RBP11.71□□□□□ -0.54
COL17A1-203ENST00000393211 CASP7P55210 303 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 EVCP57679 992 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 LRMPQ12912 555 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 TPD52L1Q16890 204 aaPredicted RBP11.71□□□□□ -0.54
COL17A1-203ENST00000393211 LRRFIP1Q32MZ4 808 aaKnown RBP11.71□□□□□ -0.54
COL17A1-203ENST00000393211 ZMYM1Q5SVZ6 1142 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 CEP57L1Q8IYX8 460 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 PLBD2Q8NHP8 589 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 FMNL2Q96PY5 1086 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 DBNDD2Q9BQY9 259 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 OGFRQ9NZT2 677 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 IMPACTQ9P2X3 320 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 NRBP1Q9UHY1 535 aa11.71□□□□□ -0.54
COL17A1-203ENST00000393211 PTPDC1A2A3K4 754 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 BECN2A8MW95 431 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 DTNBO60941 627 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 TUBB4AP04350 444 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 MYL6BP14649 208 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 NCBP1Q09161 790 aaKnown RBP11.7□□□□□ -0.54
COL17A1-203ENST00000393211 SNW1Q13573 536 aaKnown RBP11.7□□□□□ -0.54
COL17A1-203ENST00000393211 IFNL2Q8IZJ0 200 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 JARID2Q92833 1246 aaPredicted RBP11.7□□□□□ -0.54
COL17A1-203ENST00000393211 EDC3Q96F86 508 aaKnown RBP11.7□□□□□ -0.54
COL17A1-203ENST00000393211 DCAF5Q96JK2 942 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 DNAJC2Q99543 621 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms