RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 TAF7LQ5H9L4 462 aa27.67■■■□□ 2.02
VPS16-201ENST00000380443 MCTP1Q6DN14 999 aa27.67■■■□□ 2.02
VPS16-201ENST00000380443 PAG1Q9NWQ8 432 aa27.67■■■□□ 2.02
VPS16-201ENST00000380443 ABCC12Q96J65 1359 aa27.66■■■□□ 2.02
VPS16-201ENST00000380443 NOL8Q76FK4 1167 aaKnown RBP27.66■■■□□ 2.02
VPS16-201ENST00000380443 ZNF594Q96JF6 807 aaPredicted RBP27.66■■■□□ 2.02
VPS16-201ENST00000380443 ARXQ96QS3 562 aa27.66■■■□□ 2.02
VPS16-201ENST00000380443 TIMM10P62072 90 aa27.65■■■□□ 2.02
VPS16-201ENST00000380443 CCDC158Q5M9N0 1113 aa27.65■■■□□ 2.02
VPS16-201ENST00000380443 FAM182BQ5T319 152 aa27.65■■■□□ 2.02
VPS16-201ENST00000380443 DZIP3Q86Y13 1208 aaKnown RBP27.65■■■□□ 2.02
VPS16-201ENST00000380443 UPF1Q92900 1129 aaKnown RBP eCLIP27.65■■■□□ 2.02
VPS16-201ENST00000380443 GZF1Q9H116 711 aaPredicted RBP27.65■■■□□ 2.02
VPS16-201ENST00000380443 SMARCC1Q92922 1105 aaPredicted RBP27.64■■■□□ 2.02
VPS16-201ENST00000380443 LMBRD1Q9NUN5 540 aa27.64■■■□□ 2.02
VPS16-201ENST00000380443 IFIT1P09914 478 aaKnown RBP27.64■■■□□ 2.01
VPS16-201ENST00000380443 ADCK5Q3MIX3 580 aa27.64■■■□□ 2.01
VPS16-201ENST00000380443 EDC3Q96F86 508 aaKnown RBP27.64■■■□□ 2.01
VPS16-201ENST00000380443 DDX49Q9Y6V7 483 aaKnown RBP27.64■■■□□ 2.01
VPS16-201ENST00000380443 EIF5P55010 431 aaKnown RBP27.63■■■□□ 2.01
VPS16-201ENST00000380443 ZNF589Q86UQ0 364 aaPredicted RBP27.63■■■□□ 2.01
VPS16-201ENST00000380443 CCDC125Q86Z20 511 aa27.63■■■□□ 2.01
VPS16-201ENST00000380443 ZNF34Q8IZ26 560 aa27.63■■■□□ 2.01
VPS16-201ENST00000380443 PUS3Q9BZE2 481 aaKnown RBP27.63■■■□□ 2.01
VPS16-201ENST00000380443 NUP98P52948 1817 aa27.63■■■□□ 2.01
VPS16-201ENST00000380443 PDE8AO60658 829 aa27.62■■■□□ 2.01
VPS16-201ENST00000380443 CTSWP56202 376 aa27.62■■■□□ 2.01
VPS16-201ENST00000380443 BLOC1S2Q6QNY1 142 aa27.62■■■□□ 2.01
VPS16-201ENST00000380443 TTLL11Q8NHH1 800 aa27.62■■■□□ 2.01
VPS16-201ENST00000380443 CCDC87Q9NVE4 849 aa27.62■■■□□ 2.01
VPS16-201ENST00000380443 ANKRD18BA2A2Z9 1011 aa27.62■■■□□ 2.01
VPS16-201ENST00000380443 MARCH10Q8NA82 808 aaPredicted RBP27.62■■■□□ 2.01
VPS16-201ENST00000380443 KAT6BQ8WYB5 2073 aa27.61■■■□□ 2.01
VPS16-201ENST00000380443 RREB1Q92766 1687 aa27.61■■■□□ 2.01
VPS16-201ENST00000380443 MRE11P49959 708 aa27.61■■■□□ 2.01
VPS16-201ENST00000380443 DDX46Q7L014 1031 aaKnown RBP27.61■■■□□ 2.01
VPS16-201ENST00000380443 TRMT112Q9UI30 125 aaKnown RBP27.61■■■□□ 2.01
VPS16-201ENST00000380443 IRS4O14654 1257 aaPredicted RBP27.6■■■□□ 2.01
VPS16-201ENST00000380443 HSP90B1P14625 803 aaKnown RBP27.6■■■□□ 2.01
VPS16-201ENST00000380443 SMC3Q9UQE7 1217 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 MYH3P11055 1940 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 GOLIM4O00461 696 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 RPS6KB1P23443 525 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 GPTP24298 496 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 ZMYM1Q5SVZ6 1142 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 DSCC1Q9BVC3 393 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 RIPOR2Q9Y4F9 1068 aa27.6■■■□□ 2.01
VPS16-201ENST00000380443 ZFYP08048 801 aaPredicted RBP27.59■■■□□ 2.01
VPS16-201ENST00000380443 GORABQ5T7V8 394 aa27.59■■■□□ 2.01
VPS16-201ENST00000380443 INTS5Q6P9B9 1019 aaKnown RBP27.59■■■□□ 2.01
VPS16-201ENST00000380443 ITGA6P23229 1130 aa27.58■■■□□ 2.01
VPS16-201ENST00000380443 SF3B2Q13435 895 aaKnown RBP27.58■■■□□ 2.01
VPS16-201ENST00000380443 TTC39AQ5SRH9 613 aa27.58■■■□□ 2.01
VPS16-201ENST00000380443 ZNF512BQ96KM6 892 aaPredicted RBP27.58■■■□□ 2.01
VPS16-201ENST00000380443 LOC102724428A0A0B4J2F2 783 aa27.57■■■□□ 2
VPS16-201ENST00000380443 RNF113AO15541 343 aaKnown RBP27.57■■■□□ 2
VPS16-201ENST00000380443 ATP6V1AP38606 617 aa27.57■■■□□ 2
VPS16-201ENST00000380443 SIK1P57059 783 aa27.57■■■□□ 2
VPS16-201ENST00000380443 PARP10Q53GL7 1025 aa27.57■■■□□ 2
VPS16-201ENST00000380443 XAGE2Q96GT9 111 aa27.57■■■□□ 2
VPS16-201ENST00000380443 MBD3O95983 291 aa27.56■■■□□ 2
VPS16-201ENST00000380443 HMGB1P09429 215 aaKnown RBP27.56■■■□□ 2
VPS16-201ENST00000380443 LDHAL6AQ6ZMR3 332 aa27.56■■■□□ 2
VPS16-201ENST00000380443 ZNF831Q5JPB2 1677 aa27.56■■■□□ 2
VPS16-201ENST00000380443 CPA1P15085 419 aa27.55■■■□□ 2
VPS16-201ENST00000380443 TBC1D2BQ9UPU7 963 aa27.55■■■□□ 2
VPS16-201ENST00000380443 ATP6V1DQ9Y5K8 247 aa27.55■■■□□ 2
VPS16-201ENST00000380443 CRKLP46109 303 aaKnown RBP27.55■■■□□ 2
VPS16-201ENST00000380443 METTL24Q5JXM2 366 aa27.55■■■□□ 2
VPS16-201ENST00000380443 PRPF40AO75400 957 aaKnown RBP27.54■■■□□ 2
VPS16-201ENST00000380443 ATP2B3Q16720 1220 aa27.54■■■□□ 2
VPS16-201ENST00000380443 NEK1Q96PY6 1258 aa27.54■■■□□ 2
VPS16-201ENST00000380443 GREM2Q9H772 168 aa27.54■■■□□ 2
VPS16-201ENST00000380443 NDUFB9Q9Y6M9 179 aa27.54■■■□□ 2
VPS16-201ENST00000380443 RIC1Q4ADV7 1423 aa27.54■■■□□ 2
VPS16-201ENST00000380443 RGL2O15211 777 aa27.53■■■□□ 2
VPS16-201ENST00000380443 STX6O43752 255 aa27.53■■■□□ 2
VPS16-201ENST00000380443 ZSCAN22P10073 491 aaPredicted RBP27.53■■■□□ 2
VPS16-201ENST00000380443 CNNM1Q9NRU3 951 aa27.53■■■□□ 2
VPS16-201ENST00000380443 UBN2Q6ZU65 1347 aa27.52■■■□□ 2
VPS16-201ENST00000380443 TRIM37O94972 964 aa27.52■■■□□ 2
VPS16-201ENST00000380443 ACSBG1Q96GR2 724 aa27.52■■■□□ 2
VPS16-201ENST00000380443 ME3Q16798 604 aa27.51■■□□□ 1.99
VPS16-201ENST00000380443 UTP14AQ9BVJ6 771 aaKnown RBP27.51■■□□□ 1.99
VPS16-201ENST00000380443 XRCC6P12956 609 aaKnown RBP eCLIP27.51■■□□□ 1.99
VPS16-201ENST00000380443 ZNF445P59923 1031 aa27.51■■□□□ 1.99
VPS16-201ENST00000380443 CCDC83Q8IWF9 413 aa27.51■■□□□ 1.99
VPS16-201ENST00000380443 SEC62Q99442 399 aaKnown RBP27.51■■□□□ 1.99
VPS16-201ENST00000380443 GRPEL1Q9HAV7 217 aa27.51■■□□□ 1.99
VPS16-201ENST00000380443 MROH5Q6ZUA9 1318 aa27.5■■□□□ 1.99
VPS16-201ENST00000380443 CAMTA2O94983 1202 aa27.5■■□□□ 1.99
VPS16-201ENST00000380443 PDCP20941 246 aa27.5■■□□□ 1.99
VPS16-201ENST00000380443 SYT1P21579 422 aa27.5■■□□□ 1.99
VPS16-201ENST00000380443 SYNE4Q8N205 404 aa27.5■■□□□ 1.99
VPS16-201ENST00000380443 TPCN1Q9ULQ1 816 aa27.5■■□□□ 1.99
VPS16-201ENST00000380443 LARGE1O95461 756 aa27.49■■□□□ 1.99
VPS16-201ENST00000380443 ADORA1P30542 326 aa27.49■■□□□ 1.99
VPS16-201ENST00000380443 ZSCAN25Q6NSZ9 544 aa27.49■■□□□ 1.99
VPS16-201ENST00000380443 CCDC129Q6ZRS4 1044 aa27.49■■□□□ 1.99
VPS16-201ENST00000380443 VGLL2Q8N8G2 317 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms